| # | Title | Journal | Year | Citations |
|---|
| 1 | SYFPEITHI: database for MHC ligands and peptide motifs | Immunogenetics | 1999 | 2,156 |
| 2 | MHC ligands and peptide motifs: first listing | Immunogenetics | 1995 | 1,606 |
| 3 | NetMHCpan, a method for MHC class I binding prediction beyond humans | Immunogenetics | 2009 | 725 |
| 4 | Genes regulating HLA class I antigen expression in T-B lymphoblast hybrids | Immunogenetics | 1985 | 587 |
| 5 | Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism | Immunogenetics | 1999 | 574 |
| 6 | Structure, chromosomal localization, and expression of 12 genes of the MAGE family | Immunogenetics | 1994 | 554 |
| 7 | Nomenclature for the major histocompatibility complexes of different species: a proposal | Immunogenetics | 1990 | 508 |
| 8 | Heat shock proteins transfer peptides during antigen processing and CTL priming | Immunogenetics | 1994 | 507 |
| 9 | A new frequent allele is the missing link in the structural polymorphism of the human mannan-binding protein | Immunogenetics | 1994 | 483 |
| 10 | Human T-cell receptor variable gene segment families | Immunogenetics | 1995 | 483 |
| 11 | Nomenclature and listing of celiac disease relevant gluten T-cell epitopes restricted by HLA-DQ molecules | Immunogenetics | 2012 | 442 |
| 12 | Interactions of human NKG2D with its ligands MICA, MICB, and homologs of the mouse RAE-1 protein family | Immunogenetics | 2001 | 428 |
| 13 | The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage | Immunogenetics | 2005 | 416 |
| 14 | Structure and expression of the three MHC-linked HSP70 genes | Immunogenetics | 1990 | 376 |
| 15 | Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes | Immunogenetics | 2011 | 351 |
| 16 | Comparative genomics of major histocompatibility complexes | Immunogenetics | 2005 | 350 |
| 17 | Mapping of the human IL10 gene and further characterization of the 5' flanking sequence | Immunogenetics | 1997 | 343 |
| 18 | Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles | Immunogenetics | 2004 | 341 |
| 19 | Biochemical characterization and cellular distribution of a polymorphic, murine cell-surface glycoprotein expressed on lymphoid tissues | Immunogenetics | 1982 | 339 |
| 20 | NetMHCcons: a consensus method for the major histocompatibility complex class I predictions | Immunogenetics | 2012 | 333 |
| 21 | NetCTLpan: pan-specific MHC class I pathway epitope predictions | Immunogenetics | 2010 | 329 |
| 22 | HLA-G allelic variants are associated with differences in the HLA-G mRNA isoform profile and HLA-G mRNA levels | Immunogenetics | 2003 | 325 |
| 23 | Monoclonal antibodies identifying a novel T-Cell antigen and Ia antigens of human lymphocytes | Immunogenetics | 1980 | 320 |
| 24 | A polymorphic variation in a putative regulation box of the TNFA promoter region | Immunogenetics | 1994 | 317 |
| 25 | ?Both man & bird & beast?: comparative organization of MHC genes | Immunogenetics | 1995 | 301 |
| 26 | Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification | Immunogenetics | 2015 | 291 |
| 27 | Variation analysis and gene annotation of eight MHC haplotypes: The MHC Haplotype Project | Immunogenetics | 2008 | 286 |
| 28 | Prediction of the prototype of the human Toll-like receptor gene family from the pufferfish, Fugu rubripes, genome | Immunogenetics | 2003 | 285 |
| 29 | MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histocompatibility class�I and class�II loci | Immunogenetics | 2003 | 284 |
| 30 | Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system: “waiting for Godot” | Immunogenetics | 2003 | 278 |
| 31 | Definition of supertypes for HLA molecules using clustering of specificity matrices | Immunogenetics | 2004 | 269 |
| 32 | High-throughput DNA typing of HLA-A, -B, -C, and -DRB1 loci by a PCR–SSOP–Luminex method in the Japanese population | Immunogenetics | 2005 | 266 |
| 33 | H-2 haplotypes, genes and antigens: Second listing | Immunogenetics | 1983 | 261 |
| 34 | A polymorphism in the human cytotoxic T-lymphocyte antigen 4 ( CTLA4 ) gene (exon 1 +49) alters T-cell activation | Immunogenetics | 2002 | 257 |
| 35 | Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications | Immunogenetics | 2005 | 255 |
| 36 | NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ | Immunogenetics | 2013 | 254 |
| 37 | Genetic susceptibility to post-thymectomy autoimmune diseases in mice | Immunogenetics | 1981 | 252 |
| 38 | Definition of gene content for nine common group B haplotypes of the Caucasoid population: KIR haplotypes contain between seven and eleven KIR genes | Immunogenetics | 2002 | 245 |
| 39 | Genomic view of the evolution of the complement system | Immunogenetics | 2006 | 241 |
| 40 | Human cytotoxic T-lymphocyte responses specific for peptides of the wild-type Wilms' tumor gene ( WT1 ) product | Immunogenetics | 2000 | 235 |
| 41 | MHC polymorphism under host-pathogen coevolution | Immunogenetics | 2004 | 235 |
| 42 | The genomic organization and evolution of the natural killer immunoglobulin-like receptor (KIR) gene cluster | Immunogenetics | 2000 | 225 |
| 43 | Viral immune evasion: a masterpiece of evolution | Immunogenetics | 2002 | 225 |
| 44 | IgG receptor polymorphisms: risk factors for disease | Immunogenetics | 1998 | 223 |
| 45 | H-2 haplotypes, genes, and antigens: Second listing | Immunogenetics | 1982 | 218 |
| 46 | Pool sequencing of natural HLA-DR, DQ, and DP ligands reveals detailed peptide motifs, constraints of processing, and general rules | Immunogenetics | 1994 | 218 |
| 47 | Alleles and haplotypes of the MHC-encoded ABC transporters TAP1 and TAP2 | Immunogenetics | 1993 | 217 |
| 48 | A three-locus model for the chicken major histocompatibility complex | Immunogenetics | 1977 | 214 |
| 49 | A rare polyadenylation signal mutation of the FOXP3 gene (AAUAAA→AAUGAA) leads to the IPEX syndrome | Immunogenetics | 2001 | 214 |
| 50 | MICA, a new polymorphic HLA-related antigen, is expressed mainly by keratinocytes, endothelial cells, and monocytes | Immunogenetics | 1997 | 213 |
