5.7(top 5%)
impact factor
18.9K(top 1%)
papers
2.0M(top 0.1%)
citations
493(top 0.1%)
h-index
5.9(top 5%)
extended IF
19.7K
all documents
2.3M
doc citations
1.2K(top 0.1%)
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Top Articles

#TitleJournalYearCitations
1The Sequence Alignment/Map format and SAMtoolsBioinformatics200951,765
2Trimmomatic: a flexible trimmer for Illumina sequence dataBioinformatics201450,285
3Fast and accurate short read alignment with Burrows–Wheeler transformBioinformatics200945,439
4STAR: ultrafast universal RNA-seq alignerBioinformatics201338,538
5edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataBioinformatics201035,079
6RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics201428,068
7MrBayes 3: Bayesian phylogenetic inference under mixed modelsBioinformatics200326,931
8Clustal W and Clustal X version 2.0Bioinformatics200725,681
9BEDTools: a flexible suite of utilities for comparing genomic featuresBioinformatics201021,824
10MRBAYES: Bayesian inference of phylogenetic treesBioinformatics200120,438
11Search and clustering orders of magnitude faster than BLASTBioinformatics201019,196
12MODELTEST: testing the model of DNA substitution.Bioinformatics199818,840
13featureCounts: an efficient general purpose program for assigning sequence reads to genomic featuresBioinformatics201418,604
14HTSeq—a Python framework to work with high-throughput sequencing dataBioinformatics201518,233
15Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence dataBioinformatics201216,829
16RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsBioinformatics200614,886
17DnaSP v5: a software for comprehensive analysis of DNA polymorphism dataBioinformatics200914,007
18Prokka: rapid prokaryotic genome annotationBioinformatics201413,924
19UCHIME improves sensitivity and speed of chimera detectionBioinformatics201113,750
20fastp: an ultra-fast all-in-one FASTQ preprocessorBioinformatics201813,395
21Haploview: analysis and visualization of LD and haplotype mapsBioinformatics200513,384
22FLASH: fast length adjustment of short reads to improve genome assembliesBioinformatics201112,312
23The variant call format and VCFtoolsBioinformatics201112,213
24TopHat: discovering splice junctions with RNA-SeqBioinformatics200911,415
25GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an updateBioinformatics201211,251
26APE: Analyses of Phylogenetics and Evolution in R languageBioinformatics200410,870
27Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics researchBioinformatics200510,789
28BUSCO: assessing genome assembly and annotation completeness with single-copy orthologsBioinformatics201510,500
29Fast and accurate long-read alignment with Burrows–Wheeler transformBioinformatics201010,485
30Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequencesBioinformatics20069,455
31Minimap2: pairwise alignment for nucleotide sequencesBioinformatics20188,918
32trimAl: a tool for automated alignment trimming in large-scale phylogenetic analysesBioinformatics20098,711
33Jalview Version 2—a multiple sequence alignment editor and analysis workbenchBioinformatics20098,516
34CD-HIT: accelerated for clustering the next-generation sequencing dataBioinformatics20127,732
35QUAST: quality assessment tool for genome assembliesBioinformatics20137,567
36A comparison of normalization methods for high density oligonucleotide array data based on variance and biasBioinformatics20037,469
37InterProScan 5: genome-scale protein function classificationBioinformatics20147,060
38TASSEL: software for association mapping of complex traits in diverse samplesBioinformatics20076,720
39Complex heatmaps reveal patterns and correlations in multidimensional genomic dataBioinformatics20166,620
40The SWISS-MODEL workspace: a web-based environment for protein structure homology modellingBioinformatics20066,559
41adegenet: a R package for the multivariate analysis of genetic markersBioinformatics20086,332
42GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkitBioinformatics20136,295
43A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing dataBioinformatics20115,787
44ape 5.0: an environment for modern phylogenetics and evolutionary analyses in RBioinformatics20195,720
45ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networksBioinformatics20095,608
46DnaSP, DNA polymorphism analyses by the coalescent and other methodsBioinformatics20035,599
47CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structureBioinformatics20075,549
48MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graphBioinformatics20155,541
49MultiQC: summarize analysis results for multiple tools and samples in a single reportBioinformatics20165,410
50Tree View: An application to display phylogenetic trees on personal computersBioinformatics19965,259