| # | Title | Journal | Year | Citations |
|---|
| 1 | Plant cis-acting regulatory DNA elements (PLACE) database: 1999 | Nucleic Acids Research | 1999 | 3,011 |
| 2 | Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data | Rice | 2013 | 1,777 |
| 3 | Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS | Plant Cell | 2000 | 1,417 |
| 4 | A silicon transporter in rice | Nature | 2006 | 1,354 |
| 5 | GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin | Nature | 2005 | 1,326 |
| 6 | Analyses of pig genomes provide insight into porcine demography and evolution | Nature | 2012 | 1,190 |
| 7 | Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions | Nature Genetics | 2013 | 1,134 |
| 8 | Mitogen-activated protein kinase cascades in plants: a new nomenclature | Trends in Plant Science | 2002 | 1,080 |
| 9 | Hd3a, a Rice Ortholog of the Arabidopsis FT Gene, Promotes Transition to Flowering Downstream of Hd1 under Short-Day Conditions | Plant and Cell Physiology | 2002 | 1,008 |
| 10 | Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor | Proceedings of the National Academy of Sciences of the United States of America | 2006 | 1,001 |
| 11 | Comprehensive Analysis of NAC Family Genes in Oryza sativa and Arabidopsis thaliana | DNA Research | 2003 | 911 |
| 12 | The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water | Nature | 2009 | 840 |
| 13 | Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice | Science | 2003 | 834 |
| 14 | An SNP Caused Loss of Seed Shattering During Rice Domestication | Science | 2006 | 833 |
| 15 | Deletion in a gene associated with grain size increased yields during rice domestication | Nature Genetics | 2008 | 794 |
| 16 | Wild emmer genome architecture and diversity elucidate wheat evolution and domestication | Science | 2017 | 781 |
| 17 | A Large Family of Class III Plant Peroxidases | Plant and Cell Physiology | 2001 | 766 |
| 18 | An efflux transporter of silicon in rice | Nature | 2007 | 762 |
| 19 | A High-Density Rice Genetic Linkage Map with 2275 Markers Using a Single F2 Population | Genetics | 1998 | 723 |
| 20 | Retrotransposons of rice involved in mutations induced by tissue culture. | Proceedings of the National Academy of Sciences of the United States of America | 1996 | 720 |
| 21 | Gene limiting cadmium accumulation in rice | Proceedings of the National Academy of Sciences of the United States of America | 2010 | 693 |
| 22 | Adaptation of photoperiodic control pathways produces short-day flowering in rice | Nature | 2003 | 680 |
| 23 | Regulation of Gonadotropin-Releasing Hormone Secretion by Kisspeptin/Dynorphin/Neurokinin B Neurons in the Arcuate Nucleus of the Mouse | Journal of Neuroscience | 2009 | 627 |
| 24 | Early infection of scutellum tissue withAgrobacteriumallows high-speed transformation of rice | Plant Journal | 2006 | 625 |
| 25 | Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics | Plant and Cell Physiology | 2013 | 614 |
| 26 | Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis | Nature | 2001 | 610 |
| 27 | The Genome Sequence of Silkworm, Bombyx mori | DNA Research | 2004 | 594 |
| 28 | Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice | Plant Journal | 2010 | 591 |
| 29 | A Plant Vacuolar Protease, VPE, Mediates Virus-Induced Hypersensitive Cell Death | Science | 2004 | 579 |
| 30 | Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice | Nature Biotechnology | 2006 | 579 |
| 31 | A 300 kilobase interval genetic map of rice including 883 expressed sequences | Nature Genetics | 1994 | 578 |
| 32 | Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene | Proceedings of the National Academy of Sciences of the United States of America | 2007 | 563 |
| 33 | Loss of Function of a Proline-Containing Protein Confers Durable Disease Resistance in Rice | Science | 2009 | 561 |
| 34 | Efficient Promoter Cassettes for Enhanced Expression of Foreign Genes in Dicotyledonous and Monocotyledonous Plants | Plant and Cell Physiology | 1996 | 551 |
| 35 | Rice WRKY45 Plays a Crucial Role in Benzothiadiazole-Inducible Blast Resistance | Plant Cell | 2007 | 541 |
| 36 | The genome sequence and structure of rice chromosome 1 | Nature | 2002 | 519 |
| 37 | The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes | Plant Journal | 1999 | 509 |
| 38 | Neurokinin B and Dynorphin A in Kisspeptin Neurons of the Arcuate Nucleus Participate in Generation of Periodic Oscillation of Neural Activity Driving Pulsatile Gonadotropin-Releasing Hormone Secretion in the Goat | Journal of Neuroscience | 2010 | 504 |
| 39 | Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development | Molecular Genetics and Genomics | 1993 | 501 |
| 40 | Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield | Nature Genetics | 2013 | 500 |
| 41 | Chloroplast avoidance movement reduces photodamage in plants | Nature | 2002 | 497 |
| 42 | Target Site Specificity of the Tos17 Retrotransposon Shows a Preference for Insertion within Genes and against Insertion in Retrotransposon-Rich Regions of the Genome | Plant Cell | 2003 | 493 |
| 43 | Effector-Mediated Suppression of Chitin-Triggered Immunity by Magnaporthe oryzae Is Necessary for Rice Blast Disease | Plant Cell | 2012 | 493 |
| 44 | Isolation and Characterization of a Rice Dwarf Mutant with a Defect in Brassinosteroid Biosynthesis | Plant Physiology | 2002 | 492 |
| 45 | HAR1 mediates systemic regulation of symbiotic organ development | Nature | 2002 | 487 |
| 46 | A Multigene phylogeny of the Gibberella fujikuroi species complex: Detection of additional phylogenetically distinct species | Mycoscience | 2000 | 477 |
| 47 | The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants | Molecular Genetics and Genomics | 2002 | 464 |
| 48 | Cellulolytic Systems in Insects | Annual Review of Entomology | 2010 | 464 |
| 49 | Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the subunit of protein kinase CK2 | Proceedings of the National Academy of Sciences of the United States of America | 2001 | 459 |
| 50 | QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance | Theoretical and Applied Genetics | 2004 | 459 |
