| # | Title | Journal | Year | Citations |
|---|
| 1 | Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 | Nature Biotechnology | 2019 | 11,167 |
| 2 | Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) | Autophagy | 2016 | 4,701 |
| 3 | Selective Search for Object Recognition | International Journal of Computer Vision | 2013 | 4,638 |
| 4 | Classification of hyperspectral remote sensing images with support vector machines | IEEE Transactions on Geoscience and Remote Sensing | 2004 | 3,288 |
| 5 | GW151226: Observation of Gravitational Waves from a 22-Solar-Mass Binary Black Hole Coalescence | Physical Review Letters | 2016 | 2,701 |
| 6 | Science and technology roadmap for graphene, related two-dimensional crystals, and hybrid systems | Nanoscale | 2015 | 2,452 |
| 7 | Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression | Nature Genetics | 2018 | 2,224 |
| 8 | Using mutual information for selecting features in supervised neural net learning | IEEE Transactions on Neural Networks | 1994 | 1,968 |
| 9 | MetaPhlAn2 for enhanced metagenomic taxonomic profiling | Nature Methods | 2015 | 1,843 |
| 10 | Rietveld refinement guidelines | Journal of Applied Crystallography | 1999 | 1,781 |
| 11 | Theory of ultracold atomic Fermi gases | Reviews of Modern Physics | 2008 | 1,649 |
| 12 | Metagenomic microbial community profiling using unique clade-specific marker genes | Nature Methods | 2012 | 1,591 |
| 13 | Quantum fluids of light | Reviews of Modern Physics | 2013 | 1,516 |
| 14 | Modelling the COVID-19 epidemic and implementation of population-wide interventions in Italy | Nature Medicine | 2020 | 1,373 |
| 15 | Porous silicon: a quantum sponge structure for silicon based optoelectronics | Surface Science Reports | 2000 | 1,256 |
| 16 | The physics of dipolar bosonic quantum gases | Reports on Progress in Physics | 2009 | 1,201 |
| 17 | Shotgun metagenomics, from sampling to analysis | Nature Biotechnology | 2017 | 1,196 |
| 18 | Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer | Nature Medicine | 2016 | 1,193 |
| 19 | Tropos: An Agent-Oriented Software Development Methodology | Autonomous Agents and Multi-Agent Systems | 2004 | 1,175 |
| 20 | Crystallography Open Database – an open-access collection of crystal structures | Journal of Applied Crystallography | 2009 | 1,157 |
| 21 | Species-level functional profiling of metagenomes and metatranscriptomes | Nature Methods | 2018 | 1,125 |
| 22 | Punctuated Evolution of Prostate Cancer Genomes | Cell | 2013 | 1,107 |
| 23 | Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle | Cell | 2019 | 1,087 |
| 24 | Deep Neural Networks Based Recognition of Plant Diseases by Leaf Image Classification | Computational Intelligence and Neuroscience | 2016 | 1,066 |
| 25 | Trapped in Your Own Net? Network Cohesion, Structural Holes, and the Adaptation of Social Capital | Organization Science | 2000 | 1,057 |
| 26 | Automatic analysis of the difference image for unsupervised change detection | IEEE Transactions on Geoscience and Remote Sensing | 2000 | 1,037 |
| 27 | ADJUST: An automatic EEG artifact detector based on the joint use of spatial and temporal features | Psychophysiology | 2011 | 996 |
| 28 | First- and Second-Order Methods for Learning: Between Steepest Descent and Newton's Method | Neural Computation | 1992 | 981 |
| 29 | Technologies for Printing Sensors and Electronics Over Large Flexible Substrates: A Review | IEEE Sensors Journal | 2015 | 963 |
| 30 | Gene expression elucidates functional impact of polygenic risk for schizophrenia | Nature Neuroscience | 2016 | 952 |
| 31 | Numeracy and Decision Making | Psychological Science | 2006 | 943 |
| 32 | Mapping genomic loci implicates genes and synaptic biology in schizophrenia | Nature | 2022 | 929 |
| 33 | ESTIMATE OF THE MAGNETIC FIELD STRENGTH IN HEAVY-ION COLLISIONS | International Journal of Modern Physics A | 2009 | 906 |
| 34 | Total pattern fitting for the combined size–strain–stress–texture determination in thin film diffraction | Nuclear Instruments & Methods in Physics Research B | 2010 | 905 |
| 35 | Genomic correlates of clinical outcome in advanced prostate cancer | Proceedings of the National Academy of Sciences of the United States of America | 2019 | 839 |
| 36 | 150 M⊙">GW190521: A Binary Black Hole Merger with a Total Mass of 150 M⊙ | Physical Review Letters | 2020 | 836 |
| 37 | Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome | Cell Host and Microbe | 2018 | 822 |
| 38 | Prospects for observing and localizing gravitational-wave transients with Advanced LIGO, Advanced Virgo and KAGRA | Living Reviews in Relativity | 2018 | 808 |
| 39 | Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 | ELife | 2021 | 808 |
| 40 | Superfluidity of polaritons in semiconductor microcavities | Nature Physics | 2009 | 795 |
| 41 | Low intensity transcranial electric stimulation: Safety, ethical, legal regulatory and application guidelines | Clinical Neurophysiology | 2017 | 783 |
| 42 | The productivity crisis in pharmaceutical R&D | Nature Reviews Drug Discovery | 2011 | 770 |
| 43 | Collective Excitations of a Trapped Bose-Condensed Gas | Physical Review Letters | 1996 | 763 |
| 44 | A unified framework for the construction of one-step finite volume and discontinuous Galerkin schemes on unstructured meshes | Journal of Computational Physics | 2008 | 761 |
| 45 | SOX2 promotes lineage plasticity and antiandrogen resistance in TP53 - and RB1 -deficient prostate cancer | Science | 2017 | 759 |
| 46 | Polymer‐Derived Ceramics: 40 Years of Research and Innovation in Advanced Ceramics | Journal of the American Ceramic Society | 2010 | 752 |
| 47 | Numerical Approximation of Partial Differential Equations | Springer Series in Computational Mathematics | 1994 | 750 |
| 48 | Edge-centric Computing | Computer Communication Review | 2015 | 749 |
| 49 | Multifunctionality and control of the crumpling and unfolding of large-area graphene | Nature Materials | 2013 | 735 |
| 50 | Personalized In Vitro and In Vivo Cancer Models to Guide Precision Medicine | Cancer Discovery | 2017 | 735 |
