RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome | BMC Bioinformatics | 2011 | 9.6K |
UCHIME improves sensitivity and speed of chimera detection | Bioinformatics | 2011 | 9.4K |
SignalP 4.0: discriminating signal peptides from transmembrane regions | Nature Methods | 2011 | 6.9K |
FLASH: fast length adjustment of short reads to improve genome assemblies | Bioinformatics | 2011 | 6.8K |
The variant call format and VCFtools | Bioinformatics | 2011 | 6.2K |
pROC: an open-source package for R and S+ to analyze and compare ROC curves | BMC Bioinformatics | 2011 | 5.2K |
MoS2 nanoparticles grown on graphene: an advanced catalyst for the hydrogen evolution reaction | Journal of the American Chemical Society | 2011 | 4K |
Andromeda: a peptide search engine integrated into the MaxQuant environment | Journal of Proteome Research | 2011 | 3.4K |
Cytoscape 2.8: new features for data integration and network visualization | Bioinformatics | 2011 | 3.3K |
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data | Bioinformatics | 2011 | 3.1K |
Quality control and preprocessing of metagenomic datasets | Bioinformatics | 2011 | 3K |
Biochar effects on soil biota – A review | Soil Biology and Biochemistry | 2011 | 2.7K |
Molecular signatures database (MSigDB) 3.0 | Bioinformatics | 2011 | 2.5K |
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications | Bioinformatics | 2011 | 2.5K |
FIMO: scanning for occurrences of a given motif | Bioinformatics | 2011 | 2.1K |
Highly efficient visible-light-driven photocatalytic hydrogen production of CdS-cluster-decorated graphene nanosheets | Journal of the American Chemical Society | 2011 | 2K |
Large-scale automated synthesis of human functional neuroimaging data | Nature Methods | 2011 | 2K |
ProtTest 3: fast selection of best-fit models of protein evolution | Bioinformatics | 2011 | 1.9K |
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers | Bioinformatics | 2011 | 1.7K |
Scaffolding pre-assembled contigs using SSPACE | Bioinformatics | 2011 | 1.7K |
phangorn: phylogenetic analysis in R | Bioinformatics | 2011 | 1.7K |
Ultrasmall reduced graphene oxide with high near-infrared absorbance for photothermal therapy | Journal of the American Chemical Society | 2011 | 1.7K |
Density functional theory with London dispersion corrections | Wiley Interdisciplinary Reviews: Computational Molecular Science | 2011 | 1.6K |
Easyfig: a genome comparison visualizer | Bioinformatics | 2011 | 1.6K |
Assessing mitochondrial dysfunction in cells | Biochemical Journal | 2011 | 1.6K |