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Top Articles

#TitleJournalYearCitations
1Cutoff criteria for fit indexes in covariance structure analysis: Conventional criteria versus new alternativesStructural Equation Modeling199969,701
2Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis setComputational Materials Science199654,900
3UCSF Chimera?A visualization system for exploratory research and analysisJournal of Computational Chemistry200437,095
4Fast Parallel Algorithms for Short-Range Molecular DynamicsJournal of Computational Physics199535,279
5A Coefficient of Agreement for Nominal ScalesEducational and Psychological Measurement196030,234
6Coefficient alpha and the internal structure of testsPsychometrika195129,707
7An Algorithm for Least-Squares Estimation of Nonlinear ParametersJournal of the Society for Industrial and Applied Mathematics196324,784
8Semiempirical GGA-type density functional constructed with a long-range dispersion correctionJournal of Computational Chemistry200624,222
9Measuring the efficiency of decision making unitsEuropean Journal of Operational Research197822,137
10Multiwfn: A multifunctional wavefunction analyzerJournal of Computational Chemistry201221,818
11A Computational Approach to Edge DetectionIEEE Transactions on Pattern Analysis and Machine Intelligence198621,603
12The central role of the propensity score in observational studies for causal effectsBiometrika198321,591
13AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreadingJournal of Computational Chemistry201021,573
14Compressed sensingIEEE Transactions on Information Theory200620,437
15SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell SequencingJournal of Computational Biology201220,193
16Faster R-CNN: Towards Real-Time Object Detection with Region Proposal NetworksIEEE Transactions on Pattern Analysis and Machine Intelligence201720,130
17General atomic and molecular electronic structure systemJournal of Computational Chemistry199319,020
18Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanesJournal of Computational Physics197718,418
19A note on two problems in connexion with graphsNumerische Mathematik195918,243
20WGCNA: an R package for weighted correlation network analysisBMC Bioinformatics200817,294
21AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibilityJournal of Computational Chemistry200916,850
22A theory for multiresolution signal decomposition: the wavelet representationIEEE Transactions on Pattern Analysis and Machine Intelligence198916,677
23RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeBMC Bioinformatics201116,042
24Effect of the damping function in dispersion corrected density functional theoryJournal of Computational Chemistry201115,980
25Initial conditions and moment restrictions in dynamic panel data modelsJournal of Econometrics199815,755
26Generalized autoregressive conditional heteroskedasticityJournal of Econometrics198615,494
27Scalable molecular dynamics with NAMDJournal of Computational Chemistry200515,208
28Longitudinal data analysis using generalized linear modelsBiometrika198615,204
29BLAST+: architecture and applicationsBMC Bioinformatics200914,935
30The genetical evolution of social behaviour. IJournal of Theoretical Biology196414,412
31Development and testing of a general amber force fieldJournal of Computational Chemistry200414,342
32The Structure and Function of Complex NetworksSIAM Review200314,326
33CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry198314,316
34An analysis of variance test for normality (complete samples)Biometrika196513,862
35Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of ImagesIEEE Transactions on Pattern Analysis and Machine Intelligence198413,839
36GROMACS: Fast, flexible, and freeJournal of Computational Chemistry200513,676
37A method for registration of 3-D shapesIEEE Transactions on Pattern Analysis and Machine Intelligence199213,602
38LINCS: A linear constraint solver for molecular simulationsJournal of Computational Chemistry199713,446
39Statistical analysis of cointegration vectorsJournal of Economic Dynamics and Control198813,109
40Another look at the instrumental variable estimation of error-components modelsJournal of Econometrics199512,990
41Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal OmegaMolecular Systems Biology201112,778
42Silhouettes: A graphical aid to the interpretation and validation of cluster analysisJournal of Computational and Applied Mathematics198712,746
43A Decision-Theoretic Generalization of On-Line Learning and an Application to BoostingJournal of Computer and System Sciences199712,470
44Testing for a unit root in time series regressionBiometrika198812,419
45Nonlinear total variation based noise removal algorithmsPhysica D: Nonlinear Phenomena199212,211
46Multiresolution gray-scale and rotation invariant texture classification with local binary patternsIEEE Transactions on Pattern Analysis and Machine Intelligence200212,183
47Volume of fluid (VOF) method for the dynamics of free boundariesJournal of Computational Physics198112,164
48Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency informationIEEE Transactions on Information Theory200611,987
49DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFsIEEE Transactions on Pattern Analysis and Machine Intelligence201811,963
50Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulationsJournal of Computational Physics198811,578
51SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image SegmentationIEEE Transactions on Pattern Analysis and Machine Intelligence201711,162
52Monte Carlo sampling methods using Markov chains and their applicationsBiometrika197011,125
53Normalized cuts and image segmentationIEEE Transactions on Pattern Analysis and Machine Intelligence200010,785
54Cooperative Diversity in Wireless Networks: Efficient Protocols and Outage BehaviorIEEE Transactions on Information Theory200410,614
55Evaluating Goodness-of-Fit Indexes for Testing Measurement InvarianceStructural Equation Modeling200210,537
56A flexible new technique for camera calibrationIEEE Transactions on Pattern Analysis and Machine Intelligence200010,514
57Nearest neighbor pattern classificationIEEE Transactions on Information Theory196710,500
58Least squares quantization in PCMIEEE Transactions on Information Theory198210,119
59New directions in cryptographyIEEE Transactions on Information Theory197610,009
60Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray ExperimentsStatistical Applications in Genetics and Molecular Biology20049,992
61Approximation by superpositions of a sigmoidal functionMathematics of Control, Signals, and Systems19899,778
62Testing for unit roots in heterogeneous panelsJournal of Econometrics20039,755
63Scale-space and edge detection using anisotropic diffusionIEEE Transactions on Pattern Analysis and Machine Intelligence19909,662
64Eigenfaces vs. Fisherfaces: recognition using class specific linear projectionIEEE Transactions on Pattern Analysis and Machine Intelligence19979,612
65A method for the solution of certain non-linear problems in least squaresQuarterly of Applied Mathematics19449,588
66Nonlinear Oscillations, Dynamical Systems, and Bifurcations of Vector FieldsApplied Mathematical Sciences (Switzerland)19839,137
67A model of saliency-based visual attention for rapid scene analysisIEEE Transactions on Pattern Analysis and Machine Intelligence19989,026
68An algorithm for the machine calculation of complex Fourier seriesMathematics of Computation19658,978
69Testing the null hypothesis of stationarity against the alternative of a unit rootJournal of Econometrics19928,906
70Mean shift: a robust approach toward feature space analysisIEEE Transactions on Pattern Analysis and Machine Intelligence20028,904
71Chemistry with ADFJournal of Computational Chemistry20018,854
72Visualization and analysis of atomistic simulation data with OVITO–the Open Visualization ToolModelling and Simulation in Materials Science and Engineering20108,805
73Approximate Riemann solvers, parameter vectors, and difference schemesJournal of Computational Physics19818,613
74A perfectly matched layer for the absorption of electromagnetic wavesJournal of Computational Physics19948,574
75An index of factorial simplicityPsychometrika19748,510
76pROC: an open-source package for R and S+ to analyze and compare ROC curvesBMC Bioinformatics20118,498
77An application-specific protocol architecture for wireless microsensor networksIEEE Transactions on Wireless Communications20028,330
78Unit root tests in panel data: asymptotic and finite-sample propertiesJournal of Econometrics20028,238
79Prodigal: prokaryotic gene recognition and translation initiation site identificationBMC Bioinformatics20108,237
80The Application of Electronic Computers to Factor AnalysisEducational and Psychological Measurement19608,227
81Representation Learning: A Review and New PerspectivesIEEE Transactions on Pattern Analysis and Machine Intelligence20138,225
82Robust Face Recognition via Sparse RepresentationIEEE Transactions on Pattern Analysis and Machine Intelligence20098,010
83GSVA: gene set variation analysis for microarray and RNA-Seq dataBMC Bioinformatics20137,876
84Semigroups of Linear Operators and Applications to Partial Differential EquationsApplied Mathematical Sciences (Switzerland)19837,862
85An Introduction To Compressive SamplingIEEE Signal Processing Magazine20087,855
86A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse ProblemsSIAM Journal on Imaging Sciences20097,850
87The Amber biomolecular simulation programsJournal of Computational Chemistry20057,742
88A fast and robust algorithm for Bader decomposition of charge densityComputational Materials Science20067,727
89Object Detection with Discriminatively Trained Part-Based ModelsIEEE Transactions on Pattern Analysis and Machine Intelligence20107,725
90Feature selection based on mutual information criteria of max-dependency, max-relevance, and min-redundancyIEEE Transactions on Pattern Analysis and Machine Intelligence20057,719
91A continuum method for modeling surface tensionJournal of Computational Physics19927,608
92MUSCLE: a multiple sequence alignment method with reduced time and space complexityBMC Bioinformatics20047,508
93De-noising by soft-thresholdingIEEE Transactions on Information Theory19957,460
94Deciding on the Number of Classes in Latent Class Analysis and Growth Mixture Modeling: A Monte Carlo Simulation StudyStructural Equation Modeling20077,452
95Signal Recovery From Random Measurements Via Orthogonal Matching PursuitIEEE Transactions on Information Theory20077,390
96Optimization of parameters for semiempirical methods I. MethodJournal of Computational Chemistry19897,369
97Inference and missing dataBiometrika19767,293
98Deep Neural Networks for Acoustic Modeling in Speech Recognition: The Shared Views of Four Research GroupsIEEE Signal Processing Magazine20127,242
99Determining Lyapunov exponents from a time seriesPhysica D: Nonlinear Phenomena19857,198
100Determining Sample Size for Research ActivitiesEducational and Psychological Measurement19707,187