adegenet: a R package for the multivariate analysis of genetic markers | Bioinformatics | 2008 | 4K |
cclib: a library for package-independent computational chemistry algorithms | Journal of Computational Chemistry | 2008 | 3.7K |
SOAP: short oligonucleotide alignment program | Bioinformatics | 2008 | 2K |
GEIGER: investigating evolutionary radiations | Bioinformatics | 2008 | 1.8K |
Ab-initio simulations of materials using VASP: Density-functional theory and beyond | Journal of Computational Chemistry | 2008 | 1.7K |
lumi: a pipeline for processing Illumina microarray | Bioinformatics | 2008 | 1.7K |
A time-split nonhydrostatic atmospheric model for weather research and forecasting applications | Journal of Computational Physics | 2008 | 1.4K |
GLYCAM06: a generalizable biomolecular force field. Carbohydrates | Journal of Computational Chemistry | 2008 | 1.4K |
A Simple Proof of the Restricted Isometry Property for Random Matrices | Constructive Approximation | 2008 | 1.3K |
Phylocom: software for the analysis of phylogenetic community structure and trait evolution | Bioinformatics | 2008 | 1.3K |
AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics | Bioinformatics | 2008 | 1.2K |
ProteoWizard: open source software for rapid proteomics tools development | Bioinformatics | 2008 | 1.2K |
General purpose molecular dynamics simulations fully implemented on graphics processing units | Journal of Computational Physics | 2008 | 1.1K |
Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R | Bioinformatics | 2008 | 1.1K |
Computing topological parameters of biological networks | Bioinformatics | 2008 | 1.1K |
SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap | Bioinformatics | 2008 | 1.1K |
Using native and syntenically mapped cDNA alignments to improve de novo gene finding | Bioinformatics | 2008 | 871 |
Searching protein structure databases with DaliLite v.3 | Bioinformatics | 2008 | 867 |
ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences | Bioinformatics | 2008 | 845 |
Ocean forecasting in terrain-following coordinates: Formulation and skill assessment of the Regional Ocean Modeling System | Journal of Computational Physics | 2008 | 797 |
Database indexing for production MegaBLAST searches | Bioinformatics | 2008 | 699 |
An improved weighted essentially non-oscillatory scheme for hyperbolic conservation laws | Journal of Computational Physics | 2008 | 685 |
A VERSATILE SHARP INTERFACE IMMERSED BOUNDARY METHOD FOR INCOMPRESSIBLE FLOWS WITH COMPLEX BOUNDARIES | Journal of Computational Physics | 2008 | 684 |
Isogeometric fluid-structure interaction: theory, algorithms, and computations | Computational Mechanics | 2008 | 663 |
A Sparse Grid Stochastic Collocation Method for Partial Differential Equations with Random Input Data | SIAM Journal on Numerical Analysis | 2008 | 652 |