| Structure validation by Calpha geometry: phi,psi and Cbeta deviation | Proteins: Structure, Function and Bioinformatics | 2003 | 3.5K |
| The COG database: an updated version includes eukaryotes | BMC Bioinformatics | 2003 | 3.2K |
| An automated method for finding molecular complexes in large protein interaction networks | BMC Bioinformatics | 2003 | 3.1K |
| Improved protein-ligand docking using GOLD | Proteins: Structure, Function and Bioinformatics | 2003 | 2K |
| Announcing the worldwide Protein Data Bank | Nature Structural and Molecular Biology | 2003 | 1.7K |
| Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy | Journal of Molecular Biology | 2003 | 1.4K |
| Accurate determination of local defocus and specimen tilt in electron microscopy | Journal of Structural Biology | 2003 | 1.2K |
| ZDOCK: an initial-stage protein-docking algorithm | Proteins: Structure, Function and Bioinformatics | 2003 | 1K |
| Protein disorder prediction: implications for structural proteomics | Structure | 2003 | 964 |
| Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage | Journal of Molecular Biology | 2003 | 947 |
| Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes | Journal of Molecular Biology | 2003 | 924 |
| An evolving hierarchical family classification for glycosyltransferases | Journal of Molecular Biology | 2003 | 912 |
| Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations | Journal of Molecular Biology | 2003 | 858 |
| MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences | BMC Bioinformatics | 2003 | 657 |
| Evolutionarily conserved networks of residues mediate allosteric communication in proteins | Nature Structural Biology | 2003 | 652 |
| Management of cellular energy by the AMP-activated protein kinase system | FEBS Letters | 2003 | 632 |
| Recent advances in the structural biology of chondroitin sulfate and dermatan sulfate | Current Opinion in Structural Biology | 2003 | 569 |
| Structural analysis of human IgG-Fc glycoforms reveals a correlation between glycosylation and structural integrity | Journal of Molecular Biology | 2003 | 562 |
| Recognition of the DNA minor groove by pyrrole-imidazole polyamides | Current Opinion in Structural Biology | 2003 | 555 |
| The role of dynamics in allosteric regulation | Current Opinion in Structural Biology | 2003 | 550 |
| Refinement of protein structures in explicit solvent | Proteins: Structure, Function and Bioinformatics | 2003 | 521 |
| CAPRI: a Critical Assessment of PRedicted Interactions | Proteins: Structure, Function and Bioinformatics | 2003 | 487 |
| Matrix effect in bio-analysis of illicit drugs with LC-MS/MS: influence of ionization type, sample preparation, and biofluid | Journal of the American Society for Mass Spectrometry | 2003 | 479 |
| Structural characterisation and functional significance of transient protein-protein interactions | Journal of Molecular Biology | 2003 | 478 |
| Lipid rafts and caveolae as portals for endocytosis: new insights and common mechanisms | Traffic | 2003 | 460 |
