| A comprehensive pathway map of epidermal growth factor receptor signaling | Molecular Systems Biology | 2005 | 730 |
| A uniform proteomics MS/MS analysis platform utilizing open XML file formats | Molecular Systems Biology | 2005 | 574 |
| Phosphotyrosine interactome of the ErbB-receptor kinase family | Molecular Systems Biology | 2005 | 399 |
| Extension of a genetic network model by iterative experimentation and mathematical analysis | Molecular Systems Biology | 2005 | 282 |
| A global view of pleiotropy and phenotypically derived gene function in yeast | Molecular Systems Biology | 2005 | 232 |
| Refactoring bacteriophage T7 | Molecular Systems Biology | 2005 | 203 |
| A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli | Molecular Systems Biology | 2005 | 135 |
| Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses | BioSystems | 2005 | 118 |
| The origin of the genetic code: theories and their relationships, a review | BioSystems | 2005 | 109 |
| Gene function prediction from congruent synthetic lethal interactions in yeast | Molecular Systems Biology | 2005 | 101 |
| A mathematical model of combination therapy using the EGFR signaling network | BioSystems | 2005 | 84 |
| Dynamics of pruning in simulated large-scale spiking neural networks | BioSystems | 2005 | 78 |
| Threshold responses to morphogen gradients by zero-order ultrasensitivity | Molecular Systems Biology | 2005 | 73 |
| Monitoring dynamics of single-cell gene expression over multiple cell cycles | Molecular Systems Biology | 2005 | 73 |
| p53-Mdm2 loop controlled by a balance of its feedback strength and effective dampening using ATM and delayed feedback | IET Systems Biology | 2005 | 73 |
| Public-key system using DNA as a one-way function for key distribution | BioSystems | 2005 | 73 |
| Sustainable systems as organisms? | BioSystems | 2005 | 70 |
| Expression dynamics of a cellular metabolic network | Molecular Systems Biology | 2005 | 61 |
| The promoters of human cell cycle genes integrate signals from two tumor suppressive pathways during cellular transformation | Molecular Systems Biology | 2005 | 60 |
| A theoretical framework for specificity in cell signaling | Molecular Systems Biology | 2005 | 57 |
| Algorithmic approaches for computing elementary modes in large biochemical reaction networks | IET Systems Biology | 2005 | 57 |
| A measure of local variation of inter-spike intervals | BioSystems | 2005 | 55 |
| Robustness properties of apoptosis models with respect to parameter variations and intrinsic noise | IET Systems Biology | 2005 | 55 |
| Model identification of signal transduction networks from data using a state regulator problem | IET Systems Biology | 2005 | 54 |
| Combinatorial complexity and dynamical restriction of network flows in signal transduction | IET Systems Biology | 2005 | 50 |
