# | Title | Journal | Year | Citations |
---|
1 | Cutoff criteria for fit indexes in covariance structure analysis: Conventional criteria versus new alternatives | Structural Equation Modeling | 1999 | 69,701 |
2 | The Measurement of Observer Agreement for Categorical Data | Biometrics | 1977 | 55,540 |
3 | Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set | Computational Materials Science | 1996 | 54,900 |
4 | Fitting Linear Mixed-Effects Models Usinglme4 | Journal of Statistical Software | 2015 | 51,305 |
5 | The Sequence Alignment/Map format and SAMtools | Bioinformatics | 2009 | 49,124 |
6 | Trimmomatic: a flexible trimmer for Illumina sequence data | Bioinformatics | 2014 | 46,646 |
7 | Fast and accurate short read alignment with Burrows–Wheeler transform | Bioinformatics | 2009 | 43,062 |
8 | Nonparametric Estimation from Incomplete Observations | Journal of the American Statistical Association | 1958 | 42,634 |
9 | UCSF Chimera?A visualization system for exploratory research and analysis | Journal of Computational Chemistry | 2004 | 37,095 |
10 | STAR: ultrafast universal RNA-seq aligner | Bioinformatics | 2013 | 35,376 |
11 | Fast Parallel Algorithms for Short-Range Molecular Dynamics | Journal of Computational Physics | 1995 | 35,279 |
12 | Estimating the Dimension of a Model | Annals of Statistics | 1978 | 33,253 |
13 | A fast and elitist multiobjective genetic algorithm: NSGA-II | IEEE Transactions on Evolutionary Computation | 2002 | 32,998 |
14 | edgeR: a Bioconductor package for differential expression analysis of digital gene expression data | Bioinformatics | 2010 | 32,955 |
15 | A Coefficient of Agreement for Nominal Scales | Educational and Psychological Measurement | 1960 | 30,234 |
16 | Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing | Journal of the Royal Statistical Society Series B: Methodological | 1995 | 29,977 |
17 | Coefficient alpha and the internal structure of tests | Psychometrika | 1951 | 29,707 |
18 | U-Net: Convolutional Networks for Biomedical Image Segmentation | Lecture Notes in Computer Science | 2015 | 27,139 |
19 | Quantifying heterogeneity in a meta-analysis | Statistics in Medicine | 2002 | 26,845 |
20 | RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies | Bioinformatics | 2014 | 26,744 |
21 | MrBayes 3: Bayesian phylogenetic inference under mixed models | Bioinformatics | 2003 | 26,519 |
22 | Clustal W and Clustal X version 2.0 | Bioinformatics | 2007 | 25,174 |
23 | LIBSVM | ACM Transactions on Intelligent Systems and Technology | 2011 | 25,138 |
24 | An Algorithm for Least-Squares Estimation of Nonlinear Parameters | Journal of the Society for Industrial and Applied Mathematics | 1963 | 24,784 |
25 | Semiempirical GGA-type density functional constructed with a long-range dispersion correction | Journal of Computational Chemistry | 2006 | 24,222 |
26 | Measuring the efficiency of decision making units | European Journal of Operational Research | 1978 | 22,137 |
27 | Multiwfn: A multifunctional wavefunction analyzer | Journal of Computational Chemistry | 2012 | 21,818 |
28 | A Computational Approach to Edge Detection | IEEE Transactions on Pattern Analysis and Machine Intelligence | 1986 | 21,603 |
29 | The central role of the propensity score in observational studies for causal effects | Biometrika | 1983 | 21,591 |
30 | AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading | Journal of Computational Chemistry | 2010 | 21,573 |
31 | Compressed sensing | IEEE Transactions on Information Theory | 2006 | 20,437 |
32 | BEDTools: a flexible suite of utilities for comparing genomic features | Bioinformatics | 2010 | 20,367 |
33 | SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing | Journal of Computational Biology | 2012 | 20,193 |
34 | MRBAYES: Bayesian inference of phylogenetic trees | Bioinformatics | 2001 | 20,154 |
35 | Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2017 | 20,130 |
36 | General atomic and molecular electronic structure system | Journal of Computational Chemistry | 1993 | 19,020 |
37 | MODELTEST: testing the model of DNA substitution | Bioinformatics | 1998 | 18,761 |
38 | Search and clustering orders of magnitude faster than BLAST | Bioinformatics | 2010 | 18,572 |
39 | Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes | Journal of Computational Physics | 1977 | 18,418 |
40 | A note on two problems in connexion with graphs | Numerische Mathematik | 1959 | 18,243 |
41 | WGCNA: an R package for weighted correlation network analysis | BMC Bioinformatics | 2008 | 17,294 |
42 | HTSeq—a Python framework to work with high-throughput sequencing data | Bioinformatics | 2015 | 17,270 |
43 | The empirical mode decomposition and the Hilbert spectrum for nonlinear and non-stationary time series analysis | Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences | 1998 | 17,192 |
44 | Multiple Range and Multiple F Tests | Biometrics | 1955 | 17,123 |
45 | AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility | Journal of Computational Chemistry | 2009 | 16,850 |
46 | featureCounts: an efficient general purpose program for assigning sequence reads to genomic features | Bioinformatics | 2014 | 16,839 |
47 | A theory for multiresolution signal decomposition: the wavelet representation | IEEE Transactions on Pattern Analysis and Machine Intelligence | 1989 | 16,677 |
48 | Comparing the Areas under Two or More Correlated Receiver Operating Characteristic Curves: A Nonparametric Approach | Biometrics | 1988 | 16,564 |
49 | The measurement of observer agreement for categorical data | Biometrics | 1977 | 16,399 |
50 | Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data | Bioinformatics | 2012 | 16,096 |
51 | RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome | BMC Bioinformatics | 2011 | 16,042 |
52 | Effect of the damping function in dispersion corrected density functional theory | Journal of Computational Chemistry | 2011 | 15,980 |
53 | Initial conditions and moment restrictions in dynamic panel data models | Journal of Econometrics | 1998 | 15,755 |
54 | Generalized autoregressive conditional heteroskedasticity | Journal of Econometrics | 1986 | 15,494 |
55 | Maximum Likelihood from Incomplete Data Via the EM Algorithm | Journal of the Royal Statistical Society Series B: Methodological | 1977 | 15,310 |
56 | Scalable molecular dynamics with NAMD | Journal of Computational Chemistry | 2005 | 15,208 |
57 | Longitudinal data analysis using generalized linear models | Biometrika | 1986 | 15,204 |
58 | BLAST+: architecture and applications | BMC Bioinformatics | 2009 | 14,935 |
59 | RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models | Bioinformatics | 2006 | 14,675 |
60 | A Survey on Transfer Learning | IEEE Transactions on Knowledge and Data Engineering | 2010 | 14,602 |
61 | Hierarchical Grouping to Optimize an Objective Function | Journal of the American Statistical Association | 1963 | 14,513 |
62 | Regression Shrinkage and Selection Via the Lasso | Journal of the Royal Statistical Society Series B: Methodological | 1996 | 14,507 |
63 | The genetical evolution of social behaviour. I | Journal of Theoretical Biology | 1964 | 14,412 |
64 | Development and testing of a general amber force field | Journal of Computational Chemistry | 2004 | 14,342 |
65 | The Structure and Function of Complex Networks | SIAM Review | 2003 | 14,326 |
66 | CHARMM: A program for macromolecular energy, minimization, and dynamics calculations | Journal of Computational Chemistry | 1983 | 14,316 |
67 | Distribution of the Estimators for Autoregressive Time Series with a Unit Root | Journal of the American Statistical Association | 1979 | 14,276 |
68 | lavaan: AnRPackage for Structural Equation Modeling | Journal of Statistical Software | 2012 | 14,037 |
69 | Greedy function approximation: A gradient boosting machine. | Annals of Statistics | 2001 | 13,968 |
70 | An analysis of variance test for normality (complete samples) | Biometrika | 1965 | 13,862 |
71 | Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images | IEEE Transactions on Pattern Analysis and Machine Intelligence | 1984 | 13,839 |
72 | GROMACS: Fast, flexible, and free | Journal of Computational Chemistry | 2005 | 13,676 |
73 | DnaSP v5: a software for comprehensive analysis of DNA polymorphism data | Bioinformatics | 2009 | 13,645 |
74 | A method for registration of 3-D shapes | IEEE Transactions on Pattern Analysis and Machine Intelligence | 1992 | 13,602 |
75 | LINCS: A linear constraint solver for molecular simulations | Journal of Computational Chemistry | 1997 | 13,446 |
76 | Operating Characteristics of a Rank Correlation Test for Publication Bias | Biometrics | 1994 | 13,306 |
77 | UCHIME improves sensitivity and speed of chimera detection | Bioinformatics | 2011 | 13,241 |
78 | Haploview: analysis and visualization of LD and haplotype maps | Bioinformatics | 2005 | 13,223 |
79 | Statistical analysis of cointegration vectors | Journal of Economic Dynamics and Control | 1988 | 13,109 |
80 | Another look at the instrumental variable estimation of error-components models | Journal of Econometrics | 1995 | 12,990 |
81 | Regularization and variable selection via the elastic net | Journal of the Royal Statistical Society Series B: Statistical Methodology | 2005 | 12,982 |
82 | A logical calculus of the ideas immanent in nervous activity | The Bulletin of Mathematical Biophysics | 1943 | 12,960 |
83 | Prokka: rapid prokaryotic genome annotation | Bioinformatics | 2014 | 12,881 |
84 | Fast unfolding of communities in large networks | Journal of Statistical Mechanics: Theory and Experiment | 2008 | 12,786 |
85 | Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega | Molecular Systems Biology | 2011 | 12,778 |
86 | Microsoft COCO: Common Objects in Context | Lecture Notes in Computer Science | 2014 | 12,775 |
87 | Silhouettes: A graphical aid to the interpretation and validation of cluster analysis | Journal of Computational and Applied Mathematics | 1987 | 12,746 |
88 | Bootstrap Methods: Another Look at the Jackknife | Annals of Statistics | 1979 | 12,510 |
89 | A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting | Journal of Computer and System Sciences | 1997 | 12,470 |
90 | Testing for a unit root in time series regression | Biometrika | 1988 | 12,419 |
91 | lmerTest Package: Tests in Linear Mixed Effects Models | Journal of Statistical Software | 2017 | 12,283 |
92 | Nonlinear total variation based noise removal algorithms | Physica D: Nonlinear Phenomena | 1992 | 12,211 |
93 | Multiresolution gray-scale and rotation invariant texture classification with local binary patterns | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2002 | 12,183 |
94 | Volume of fluid (VOF) method for the dynamics of free boundaries | Journal of Computational Physics | 1981 | 12,164 |
95 | Intuitionistic fuzzy sets | Fuzzy Sets and Systems | 1986 | 12,130 |
96 | Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency information | IEEE Transactions on Information Theory | 2006 | 11,987 |
97 | DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2018 | 11,963 |
98 | SSD: Single Shot MultiBox Detector | Lecture Notes in Computer Science | 2016 | 11,879 |
99 | Bayes Factors | Journal of the American Statistical Association | 1995 | 11,852 |
100 | Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations | Journal of Computational Physics | 1988 | 11,578 |