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Top Articles

#TitleJournalYearCitations
1Cutoff criteria for fit indexes in covariance structure analysis: Conventional criteria versus new alternativesStructural Equation Modeling199969,701
2The Measurement of Observer Agreement for Categorical DataBiometrics197755,540
3Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis setComputational Materials Science199654,900
4Fitting Linear Mixed-Effects Models Usinglme4Journal of Statistical Software201551,305
5The Sequence Alignment/Map format and SAMtoolsBioinformatics200949,124
6Trimmomatic: a flexible trimmer for Illumina sequence dataBioinformatics201446,646
7Fast and accurate short read alignment with Burrows–Wheeler transformBioinformatics200943,062
8Nonparametric Estimation from Incomplete ObservationsJournal of the American Statistical Association195842,634
9UCSF Chimera?A visualization system for exploratory research and analysisJournal of Computational Chemistry200437,095
10STAR: ultrafast universal RNA-seq alignerBioinformatics201335,376
11Fast Parallel Algorithms for Short-Range Molecular DynamicsJournal of Computational Physics199535,279
12Estimating the Dimension of a ModelAnnals of Statistics197833,253
13A fast and elitist multiobjective genetic algorithm: NSGA-IIIEEE Transactions on Evolutionary Computation200232,998
14edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataBioinformatics201032,955
15A Coefficient of Agreement for Nominal ScalesEducational and Psychological Measurement196030,234
16Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple TestingJournal of the Royal Statistical Society Series B: Methodological199529,977
17Coefficient alpha and the internal structure of testsPsychometrika195129,707
18U-Net: Convolutional Networks for Biomedical Image SegmentationLecture Notes in Computer Science201527,139
19Quantifying heterogeneity in a meta-analysisStatistics in Medicine200226,845
20RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics201426,744
21MrBayes 3: Bayesian phylogenetic inference under mixed modelsBioinformatics200326,519
22Clustal W and Clustal X version 2.0Bioinformatics200725,174
23LIBSVMACM Transactions on Intelligent Systems and Technology201125,138
24An Algorithm for Least-Squares Estimation of Nonlinear ParametersJournal of the Society for Industrial and Applied Mathematics196324,784
25Semiempirical GGA-type density functional constructed with a long-range dispersion correctionJournal of Computational Chemistry200624,222
26Measuring the efficiency of decision making unitsEuropean Journal of Operational Research197822,137
27Multiwfn: A multifunctional wavefunction analyzerJournal of Computational Chemistry201221,818
28A Computational Approach to Edge DetectionIEEE Transactions on Pattern Analysis and Machine Intelligence198621,603
29The central role of the propensity score in observational studies for causal effectsBiometrika198321,591
30AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreadingJournal of Computational Chemistry201021,573
31(null)Journal of Global Optimization199720,938
32Compressed sensingIEEE Transactions on Information Theory200620,437
33BEDTools: a flexible suite of utilities for comparing genomic featuresBioinformatics201020,367
34SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell SequencingJournal of Computational Biology201220,193
35MRBAYES: Bayesian inference of phylogenetic treesBioinformatics200120,154
36Faster R-CNN: Towards Real-Time Object Detection with Region Proposal NetworksIEEE Transactions on Pattern Analysis and Machine Intelligence201720,130
37General atomic and molecular electronic structure systemJournal of Computational Chemistry199319,020
38MODELTEST: testing the model of DNA substitutionBioinformatics199818,761
39Search and clustering orders of magnitude faster than BLASTBioinformatics201018,572
40Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanesJournal of Computational Physics197718,418
41A note on two problems in connexion with graphsNumerische Mathematik195918,243
42WGCNA: an R package for weighted correlation network analysisBMC Bioinformatics200817,294
43HTSeq—a Python framework to work with high-throughput sequencing dataBioinformatics201517,270
44The empirical mode decomposition and the Hilbert spectrum for nonlinear and non-stationary time series analysisProceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences199817,192
45Multiple Range and Multiple F TestsBiometrics195517,123
46AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibilityJournal of Computational Chemistry200916,850
47featureCounts: an efficient general purpose program for assigning sequence reads to genomic featuresBioinformatics201416,839
48A theory for multiresolution signal decomposition: the wavelet representationIEEE Transactions on Pattern Analysis and Machine Intelligence198916,677
49Comparing the Areas under Two or More Correlated Receiver Operating Characteristic Curves: A Nonparametric ApproachBiometrics198816,564
50The measurement of observer agreement for categorical dataBiometrics197716,399
51Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence dataBioinformatics201216,096
52RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeBMC Bioinformatics201116,042
53Effect of the damping function in dispersion corrected density functional theoryJournal of Computational Chemistry201115,980
54Initial conditions and moment restrictions in dynamic panel data modelsJournal of Econometrics199815,755
55Generalized autoregressive conditional heteroskedasticityJournal of Econometrics198615,494
56Maximum Likelihood from Incomplete Data Via the EM AlgorithmJournal of the Royal Statistical Society Series B: Methodological197715,310
57Scalable molecular dynamics with NAMDJournal of Computational Chemistry200515,208
58Longitudinal data analysis using generalized linear modelsBiometrika198615,204
59BLAST+: architecture and applicationsBMC Bioinformatics200914,935
60RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsBioinformatics200614,675
61A Survey on Transfer LearningIEEE Transactions on Knowledge and Data Engineering201014,602
62Hierarchical Grouping to Optimize an Objective FunctionJournal of the American Statistical Association196314,513
63Regression Shrinkage and Selection Via the LassoJournal of the Royal Statistical Society Series B: Methodological199614,507
64The genetical evolution of social behaviour. IJournal of Theoretical Biology196414,412
65Development and testing of a general amber force fieldJournal of Computational Chemistry200414,342
66The Structure and Function of Complex NetworksSIAM Review200314,326
67CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry198314,316
68Distribution of the Estimators for Autoregressive Time Series with a Unit RootJournal of the American Statistical Association197914,276
69lavaan: AnRPackage for Structural Equation ModelingJournal of Statistical Software201214,037
70Greedy function approximation: A gradient boosting machine.Annals of Statistics200113,968
71An analysis of variance test for normality (complete samples)Biometrika196513,862
72Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of ImagesIEEE Transactions on Pattern Analysis and Machine Intelligence198413,839
73GROMACS: Fast, flexible, and freeJournal of Computational Chemistry200513,676
74DnaSP v5: a software for comprehensive analysis of DNA polymorphism dataBioinformatics200913,645
75A method for registration of 3-D shapesIEEE Transactions on Pattern Analysis and Machine Intelligence199213,602
76LINCS: A linear constraint solver for molecular simulationsJournal of Computational Chemistry199713,446
77Operating Characteristics of a Rank Correlation Test for Publication BiasBiometrics199413,306
78UCHIME improves sensitivity and speed of chimera detectionBioinformatics201113,241
79Haploview: analysis and visualization of LD and haplotype mapsBioinformatics200513,223
80Statistical analysis of cointegration vectorsJournal of Economic Dynamics and Control198813,109
81Another look at the instrumental variable estimation of error-components modelsJournal of Econometrics199512,990
82Regularization and variable selection via the elastic netJournal of the Royal Statistical Society Series B: Statistical Methodology200512,982
83A logical calculus of the ideas immanent in nervous activityThe Bulletin of Mathematical Biophysics194312,960
84Prokka: rapid prokaryotic genome annotationBioinformatics201412,881
85Fast unfolding of communities in large networksJournal of Statistical Mechanics: Theory and Experiment200812,786
86Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal OmegaMolecular Systems Biology201112,778
87Microsoft COCO: Common Objects in ContextLecture Notes in Computer Science201412,775
88Silhouettes: A graphical aid to the interpretation and validation of cluster analysisJournal of Computational and Applied Mathematics198712,746
89Bootstrap Methods: Another Look at the JackknifeAnnals of Statistics197912,510
90A Decision-Theoretic Generalization of On-Line Learning and an Application to BoostingJournal of Computer and System Sciences199712,470
91Testing for a unit root in time series regressionBiometrika198812,419
92lmerTest Package: Tests in Linear Mixed Effects ModelsJournal of Statistical Software201712,283
93Nonlinear total variation based noise removal algorithmsPhysica D: Nonlinear Phenomena199212,211
94Multiresolution gray-scale and rotation invariant texture classification with local binary patternsIEEE Transactions on Pattern Analysis and Machine Intelligence200212,183
95Volume of fluid (VOF) method for the dynamics of free boundariesJournal of Computational Physics198112,164
96Intuitionistic fuzzy setsFuzzy Sets and Systems198612,130
97Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency informationIEEE Transactions on Information Theory200611,987
98DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFsIEEE Transactions on Pattern Analysis and Machine Intelligence201811,963
99SSD: Single Shot MultiBox DetectorLecture Notes in Computer Science201611,879
100Bayes FactorsJournal of the American Statistical Association199511,852