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Top Articles

#TitleJournalYearCitations
1Cutoff criteria for fit indexes in covariance structure analysis: Conventional criteria versus new alternativesStructural Equation Modeling199969,701
2Long Short-Term MemoryNeural Computation199758,553
3The Measurement of Observer Agreement for Categorical DataBiometrics197755,540
4Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis setComputational Materials Science199654,900
5Fitting Linear Mixed-Effects Models Usinglme4Journal of Statistical Software201551,305
6The Sequence Alignment/Map format and SAMtoolsBioinformatics200949,124
7Trimmomatic: a flexible trimmer for Illumina sequence dataBioinformatics201446,646
8Fast and accurate short read alignment with Burrows–Wheeler transformBioinformatics200943,062
9Nonparametric Estimation from Incomplete ObservationsJournal of the American Statistical Association195842,634
10Distinctive Image Features from Scale-Invariant KeypointsInternational Journal of Computer Vision200442,314
11Support-vector networksMachine Learning199538,107
12UCSF Chimera?A visualization system for exploratory research and analysisJournal of Computational Chemistry200437,095
13STAR: ultrafast universal RNA-seq alignerBioinformatics201335,376
14Fast Parallel Algorithms for Short-Range Molecular DynamicsJournal of Computational Physics199535,279
15Image Quality Assessment: From Error Visibility to Structural SimilarityIEEE Transactions on Image Processing200434,925
16Perceived Usefulness, Perceived Ease of Use, and User Acceptance of Information TechnologyMIS Quarterly: Management Information Systems198934,035
17Estimating the Dimension of a ModelAnnals of Statistics197833,253
18A fast and elitist multiobjective genetic algorithm: NSGA-IIIEEE Transactions on Evolutionary Computation200232,998
19edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataBioinformatics201032,955
20A Threshold Selection Method from Gray-Level HistogramsIEEE Transactions on Systems, Man, and Cybernetics197930,260
21A Coefficient of Agreement for Nominal ScalesEducational and Psychological Measurement196030,234
22Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple TestingJournal of the Royal Statistical Society Series B: Methodological199529,977
23Coefficient alpha and the internal structure of testsPsychometrika195129,707
24U-Net: Convolutional Networks for Biomedical Image SegmentationLecture Notes in Computer Science201527,139
25Quantifying heterogeneity in a meta-analysisStatistics in Medicine200226,845
26RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics201426,744
27MrBayes 3: Bayesian phylogenetic inference under mixed modelsBioinformatics200326,519
28Clustal W and Clustal X version 2.0Bioinformatics200725,174
29LIBSVMACM Transactions on Intelligent Systems and Technology201125,138
30An Algorithm for Least-Squares Estimation of Nonlinear ParametersJournal of the Society for Industrial and Applied Mathematics196324,784
31Semiempirical GGA-type density functional constructed with a long-range dispersion correctionJournal of Computational Chemistry200624,222
32ImageNet Large Scale Visual Recognition ChallengeInternational Journal of Computer Vision201524,215
33Measuring the efficiency of decision making unitsEuropean Journal of Operational Research197822,137
34User Acceptance of Information Technology: Toward a Unified ViewMIS Quarterly: Management Information Systems200321,969
35Multiwfn: A multifunctional wavefunction analyzerJournal of Computational Chemistry201221,818
36A Computational Approach to Edge DetectionIEEE Transactions on Pattern Analysis and Machine Intelligence198621,603
37The central role of the propensity score in observational studies for causal effectsBiometrika198321,591
38AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreadingJournal of Computational Chemistry201021,573
39Compressed sensingIEEE Transactions on Information Theory200620,437
40BEDTools: a flexible suite of utilities for comparing genomic featuresBioinformatics201020,367
41SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell SequencingJournal of Computational Biology201220,193
42MRBAYES: Bayesian inference of phylogenetic treesBioinformatics200120,154
43Faster R-CNN: Towards Real-Time Object Detection with Region Proposal NetworksIEEE Transactions on Pattern Analysis and Machine Intelligence201720,130
44General atomic and molecular electronic structure systemJournal of Computational Chemistry199319,020
45MODELTEST: testing the model of DNA substitutionBioinformatics199818,761
46Bagging predictorsMachine Learning199618,759
47Search and clustering orders of magnitude faster than BLASTBioinformatics201018,572
48Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanesJournal of Computational Physics197718,418
49A note on two problems in connexion with graphsNumerische Mathematik195918,243
50WGCNA: an R package for weighted correlation network analysisBMC Bioinformatics200817,294
51HTSeq—a Python framework to work with high-throughput sequencing dataBioinformatics201517,270
52The empirical mode decomposition and the Hilbert spectrum for nonlinear and non-stationary time series analysisProceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences199817,192
53Multiple Range and Multiple F TestsBiometrics195517,123
54SMOTE: Synthetic Minority Over-sampling TechniqueJournal of Artificial Intelligence Research017,022
55Textural Features for Image ClassificationIEEE Transactions on Systems, Man, and Cybernetics197316,889
56AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibilityJournal of Computational Chemistry200916,850
57featureCounts: an efficient general purpose program for assigning sequence reads to genomic featuresBioinformatics201416,839
58A theory for multiresolution signal decomposition: the wavelet representationIEEE Transactions on Pattern Analysis and Machine Intelligence198916,677
59Comparing the Areas under Two or More Correlated Receiver Operating Characteristic Curves: A Nonparametric ApproachBiometrics198816,564
60The measurement of observer agreement for categorical dataBiometrics197716,399
61Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence dataBioinformatics201216,096
62RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeBMC Bioinformatics201116,042
63Multilayer feedforward networks are universal approximatorsNeural Networks198916,040
64Effect of the damping function in dispersion corrected density functional theoryJournal of Computational Chemistry201115,980
65Initial conditions and moment restrictions in dynamic panel data modelsJournal of Econometrics199815,755
66Fuzzy identification of systems and its applications to modeling and controlIEEE Transactions on Systems, Man, and Cybernetics198515,669
67Generalized autoregressive conditional heteroskedasticityJournal of Econometrics198615,494
68Maximum Likelihood from Incomplete Data Via the EM AlgorithmJournal of the Royal Statistical Society Series B: Methodological197715,310
69Scalable molecular dynamics with NAMDJournal of Computational Chemistry200515,208
70Longitudinal data analysis using generalized linear modelsBiometrika198615,204
71An introduction to ROC analysisPattern Recognition Letters200614,987
72BLAST+: architecture and applicationsBMC Bioinformatics200914,935
73RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsBioinformatics200614,675
74A Survey on Transfer LearningIEEE Transactions on Knowledge and Data Engineering201014,602
75The Elements of Statistical LearningSpringer Series in Statistics200914,554
76Hierarchical Grouping to Optimize an Objective FunctionJournal of the American Statistical Association196314,513
77Regression Shrinkage and Selection Via the LassoJournal of the Royal Statistical Society Series B: Methodological199614,507
78GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputersSoftwareX201514,414
79The genetical evolution of social behaviour. IJournal of Theoretical Biology196414,412
80Development and testing of a general amber force fieldJournal of Computational Chemistry200414,342
81The Structure and Function of Complex NetworksSIAM Review200314,326
82CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry198314,316
83Distribution of the Estimators for Autoregressive Time Series with a Unit RootJournal of the American Statistical Association197914,276
84On Information and SufficiencyAnnals of Mathematical Statistics195114,169
85lavaan: AnRPackage for Structural Equation ModelingJournal of Statistical Software201214,037
86Greedy function approximation: A gradient boosting machine.Annals of Statistics200113,968
87An analysis of variance test for normality (complete samples)Biometrika196513,862
88Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of ImagesIEEE Transactions on Pattern Analysis and Machine Intelligence198413,839
89GROMACS: Fast, flexible, and freeJournal of Computational Chemistry200513,676
90DnaSP v5: a software for comprehensive analysis of DNA polymorphism dataBioinformatics200913,645
91Snakes: Active contour modelsInternational Journal of Computer Vision198813,615
92A method for registration of 3-D shapesIEEE Transactions on Pattern Analysis and Machine Intelligence199213,602
93LINCS: A linear constraint solver for molecular simulationsJournal of Computational Chemistry199713,446
94Operating Characteristics of a Rank Correlation Test for Publication BiasBiometrics199413,306
95UCHIME improves sensitivity and speed of chimera detectionBioinformatics201113,241
96Haploview: analysis and visualization of LD and haplotype mapsBioinformatics200513,223
97Statistical analysis of cointegration vectorsJournal of Economic Dynamics and Control198813,109
98Another look at the instrumental variable estimation of error-components modelsJournal of Econometrics199512,990
99Regularization and variable selection via the elastic netJournal of the Royal Statistical Society Series B: Statistical Methodology200512,982
100A logical calculus of the ideas immanent in nervous activityThe Bulletin of Mathematical Biophysics194312,960