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ON SOLVING SOME HETEROGENEOUS PROBLEMS OF HEALTHCARE INFORMATION SHARING AND INTEROPERABILITY USING ONTOLOGY COMPUTING

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Biomedical Engineering

Abstract

A Clinical Information System (CIS) (or interchangeably, called Healthcare Information System (HIS)) is usually implemented using a Windows-based client-and-server architecture. The development of this system relies heavily on the use of a medical database as a backend and a graphic user interface (GUI) for data input and output as a frontend. The data in the frontend consists of multiple GUI’s fields of various forms, which compose structured data and free-text medical reports on patients. These free text medical reports are mostly made of the complicated part of unstructured text data. Usually, the free-text medical reports include reports on patient intake, examination, and discharge, which could be an input from a keyboard, a handwriting device, a voice microphone, transcription service or others. All the data, including structured and unstructured data, are stored in the backend database. Generally a relational database (RDB) is adopted and its schema was well designed by applying normalization rules so that a flat data view in GUI is implemented with multiple tables and constraints to maintain the data integrity and consistency.

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Reference

  1. C. Friedman, L. Shagina, Y. Lussier, and G. Hripcsak,“Automated Encoding of Clinical Documents based on Natural Language Processing,” Journal of the American Medical Informatics Association, Vol. 11, No. 5, 2004, pp. 392–402.

    Article  Google Scholar 

  2. W. Kim and J. Seo,“Classifying Schematic and Data Heterogeneity in Multidatabase Systems,” IEEE Computer, Vol. 24, No. 12, 1991, pp. 12–18.

    Google Scholar 

  3. V. Kashyap and A. Sheth, “Semantic Heterogeneity in Global Information Systems: The Role of Metadata, Context and Ontologies,” in Cooperative Information Systems,  M. Papzoglou and G. Schageter (eds.), Academic Press, San Diego, 1996, pp.139–178.

    Google Scholar 

  4. J. Cardoso and A. P. Sheth,“The Semantic Web and Its Application,” in Semantic Web Services, Processes and Applications, Jorge Cardoso and Amit P. Sheth (eds.), Springer, 2006, pp. 5–36.

    Google Scholar 

  5. A. P. Sheth and J. A. Larson,“Federated Database Systems for Managing Distributed, Heterogeneous, and Autonomous Databases,” ACM Computing Surveys, Vol. 22, No. 3, September 1990, pp.183–236.

    Article  Google Scholar 

  6. R. M. Colomb,“Impact of Semantic Heterogeneity on Federating Databases,” The Computer Journal, Vol. 40, 1997, pp. 235–244.

    Article  Google Scholar 

  7. G. Wiederhold,“Mediation to Deal with Heterogeneous Data Sources,” Proceedings of the Interoperating Geographic Information Systems Conference, Zurich, Switzerland, March 10–12, 1999. LNCS 1580, Springer Verlag.

    Google Scholar 

  8. A. Zisman and J. Kramer, “Supporting Interoperability of Autonomous Hospital Database: a Case Study,” Proceedings of the 1st East-European Symposium on Advances in Databases and Information Systems, St. Peterburg, 1997, pp. 285–294.

    Google Scholar 

  9. I. Manolescu, D. Florescu and D. Kossmann,“Answering XML Queries over Heterogeneous Data Source,” Proceedings of the 27th International Conference on VLDBs, Roma, Italy, 2001, pp. 241–250.

    Google Scholar 

  10. T. Bray, J. Paoli, C. M. Sperberg-McQueen, and E. Maler (eds.), Extensible Markup Language (XML) 1.0 (Second Edition). W3C Recommendation, October 2000. Latest version is available at http://www.w3.org/TR/REC-xml/

  11. XQuery,2007. http://www.w3.org/TR/xquery/.

  12. J. Ostell,“Databases of Discovery”, ACM QUEUE, Vol. 3, No. 3, 2005, pp. 40–48.

    Article  Google Scholar 

  13. L. Seligman and A. Rosenthal,“XML’s Impact on Databases and Data Sharing,” Computer, Vol. 34, No. 6, 2001, pp. 59– 67.

    Article  Google Scholar 

  14. E. Sciore, M. Siegel and A. Rosenthal,“Using Semantic Values to Facilitate Interoperability among Heterogeneous Information Systems,” ACM TODS, Vol. 19, No. 2, 1994, pp. 254–290.

    Article  Google Scholar 

  15. H. Karadimas, F. Hemery, P. Roland and E. Lepage,“DbMap: Improving Database Interoperability Issues in Medical Software using a Simple, Java-XML based Solution,” Proceedings of AMIA Symposium, Vol. 7, 2000, pp. 408–412.

    Google Scholar 

  16. C-S. D. Wei, S. Y. Sung, S. J. Doong and P.A. Ng, “Integration of Structured and Unstructured Text Data in a Clinical Information System,” Transactions of the SDPS: Journal of Integrated Design & Process Science, Vol. 10, No. 3, September 2006, pp.61–77.

    Google Scholar 

  17. W3C,“Semantic Web Activity,” available at http://www.w3.org/2001/sw/.

  18. M.K. Smith, C. Welty and D.L. McGuinness,“OWL Web Ontology Language Guide. W3C Recommendation,” February 2004. Latest version is available at http://www.w3.org/TR/owl-guide/.

  19. L. Russel,“New Directions in Semantic Interoperability,” The Semantic Interoperability Community of Practice (SICoP) Spec. Conference 2, Building Knowledge-bases for Cross-Domain Semantic Interoperability, April 25, 2007.

    Google Scholar 

  20. L. Baresi, E. Di Nitto and C. Ghezzi,“Toward Open-World Software: Issues and Challenges,” IEEE Computer, Vol. 39, No. 10, October 2006, pp. 36–43. 

    Article  Google Scholar 

  21. D. F. Brauner, M. A. Casanova, and C. J. P de Lucena,“Using Ontologies as Artifacts to Enable Databases Interoperability,” University of Hamburg: Workshop on Ontologies as Software Engineering Artifacts, Hamburg, Germany, July 6, 2004.

    Google Scholar 

  22. A. Dogac, G. Laleci, S. Kirbas, S. Sinir, A. Yildiz and Y. Gurcan,“Artemis: Deploying Semantically Enriched Web Services in the Healthcare Domain,” Information Systems, Vol. 31, No. 4, 2006, pp. 321–339.

    Article  Google Scholar 

  23. Health Level 7, Health Level 7 (HL7), 2006, http://www.hl7.org.

  24. D. Dou, P. LePendu, S. Kim and P. Qi,“Integrating Databases into the Semantic Web through an Ontology-based Framework,” Proceedings of 3rd International workshop on Semantic Web and Databases, 2006. pp. 54.

    Google Scholar 

  25. J. Davies, A. Duke and Y. Sure,“OntoShare: Using Ontologies for Knowledge Sharing,” Proceedings of International Workshop on Semantic Web, at 11th International WWW conference, Honolulu, Hawaii, USA, May 7–11, 2002.

    Google Scholar 

  26. P. Kataria, N. Koay, R. Juric, K. Madani and I. Tesanovic,“Ontology for Interoperability and Data Sharing in Healthcare,” Proceedings of the 4th IASTED International Conference on Advances in Computer Science and Technology, Langkawi, Malaysia, April 2–4, 2008, pp. 323–328.

    Google Scholar 

  27. DR2Q,2009. http://www4.wiwiss.fu-berlin.de/bizer/d2rq/spec/index.htm.

  28. TopBraid,2010, http://www.topquadrant.com/products/TB_Composer.html.

  29. SWRL,2004, http://www.w3.org/Submission/SWRL/.

  30. T.R. Gruber,“A Translation Approach to Portable Ontology Specifications,” Knowledge Acquisition, Vol. 5, No. 2, 1993, pp. 199–220.

    Article  Google Scholar 

  31. G. Klyne, J.J. Carroll, and B. McBride (eds.),“Resource Description Framework (RDF) Concepts and Abstract Syntax,” W3C Recommendation (February 2004). Latest version is available at http://www.w3.org/TR/rdf-concepts/.

  32. N. F. Noy and D. L. McGuinness,“Stanford Knowledge Systems Laboratory Technical Report KSL-01-05” and“Stanford Medical Informatics Technical Report SMI-2001-0880,” March 2001.

    Google Scholar 

  33. H.L.R. Chiang, T.M. Barron and V.C. Storey,“Reverse Engineering of Relational Databases: Extraction of an EER Model from a Relational Database,” Data & Knowledge Engineering, Vol. 12, No. 2, 1994, pp. 107–142.

    Article  Google Scholar 

  34. M. Vermeer and P. Apers,“Object-Oriented Views of Relational Databases Incorporating Behaviour Database,” Proceedings of the 4th International Conference on Database Systems for Advanced Applications (DASFAA), Singapore, April 11–13, 1995.

    Google Scholar 

  35. M. Li, X.Y. Du and S. Wang,“Learning Ontology from  Relational Database, ” Proceedings of the 4th International Conference on Machine Learning and Cybernetics, Guangzhou, China, August 18–21, 2005, pp. 3410–3415.

    Google Scholar 

  36. V. Kashyap,“Design and Creation of Ontologies for Environmental Information Retrieval,” Proceedings of the 12th Workshop on Knowledge Acquisition, Modeling, and Management, Alberta, Canada, 1999.

    Google Scholar 

  37. C. Nyulas, M. O’Connor and S. Tu,“DataMaster-a Plug-in for Importing Schemas and Data from Relational databases into Protégé,” Proceedings of the 10th International Protégé Conference, Budapest, Hungary, July 15–18, 2007.

    Google Scholar 

  38. DataGenie,2007. http://protege.cim3.net/cgi-bin/wiki.pl?DataGenie.

  39. C.P. de Laborda and S. Conrad,“Relational.OWL - A Data and Schema Representation Format Based on OWL,” Proceedings of 2nd Asia-Pacific Conference on Conceptual Modelling, Newcastle, Australia. CRPIT, 43. Hartmann, S. and Stumptner, M., Eds. ACS, 2005, pp. 89–96.

    Google Scholar 

  40. R. Ghawi and N. Cullot,“Database-to-Ontology Mapping Generation for semantic Interoperability,” The 3rd International Workshop on Database Interoperability (InterDB 2007), held in conjunction with VLDB 2007, Vienna, Austria.

    Google Scholar 

  41. E.F. Codd,“A Relational Model of Data for Large Shared Data Banks,” Communications of ACM, Vol. 13, No. 6, June 1970, pp. 377–387.

    Article  MATH  Google Scholar 

  42. Maedche, A., Motik, B., Silva, N. and Volz, R. (2002). MAFRA - A MApping FRAmework for Distributed Ontologies, Proceedings of the 13th European Conference on Knowledge Engineering and Knowledge Management (EKAW), Siqüenza, Spain, pp. 235–250.

    Google Scholar 

  43. J. Walker, E. Pan, D. Johnston, J. Adler-Milstein, D.W. Bates and B. Middleton, “The Value of Health Care Information Exchange and Interoperability,” Health Affairs (The Policy J. of the Health Sphere), Vol. 10 January, 2005, pp. 10–18.

    Google Scholar 

  44. D. Brailer,“Interoperability: The Key to the Future Health Care System,” Health Affairs (The Policy J. of the Health Sphere), Vol. 10 (January), 2005, pp. 19–21.

    Google Scholar 

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Correspondence to Peter A. Ng .

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Wei, CS.D., Doong, JG., Ng, P.A. (2011). ON SOLVING SOME HETEROGENEOUS PROBLEMS OF HEALTHCARE INFORMATION SHARING AND INTEROPERABILITY USING ONTOLOGY COMPUTING. In: Suh, S., Gurupur, V., Tanik, M. (eds) Biomedical Engineering. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-0116-2_12

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  • DOI: https://doi.org/10.1007/978-1-4614-0116-2_12

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