Abstract
Traditional antimicrobial susceptibility test methods for detection of S. aureus resistant to oxacillin (MRSA) such as disk diffusion, broth microdilution, and oxacillin screen plate require 18–24 h of incubation after having the organism growing in pure culture. Rapid and accurate identification of MRSA isolates is essential not only for patient care, but also for effective infection control programs to limit the spread of MRSA. In the last few years, several commercial rapid tests for detection of MRSA directly from nasal and wound swabs, as well as from positive blood cultures, have been developed for use in clinical laboratories. Chromogenic agar plates and real-time PCR and other molecular tests are gaining popularity as MRSA screening tests because they have the advantage of a lower turnaround time than that of traditional culture and susceptibility testing and they are capable of detecting MRSA directly from nasal and wound swabs, allowing rapid identification of colonized or infected patients. In addition, molecular methods able to detect and differentiate S. aureus and MRSA (SA/MRSA) directly from blood cultures are becoming a useful tool for rapid detection of bacteremia caused by MSSA and MRSA. This review focuses on the procedures for performing testing using rapid methods currently available for detection of MRSA directly from clinical specimens.
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References
Perry JD (2017) A decade of development of chromogenic culture media for clinical microbiology in an era of molecular diagnostics. Clin Microbiol Rev 30(4):449–479
Van Belkum A, Rochas O (2018) Laboratory-based and point-of-care testing for MSSA/MRSA detection in the age of whole genome sequencing. Front Microbiol 9:1437. https://doi.org/10.3389/fmicb.2018.01437
Polisena J, Chen S, Cimon K et al (2011) Clinical effectiveness of rapid tests for methicillin resistant Staphylococcus aureus (MRSA) in hospitalized patients: a systematic review. BMC Infect Dis 11:336. https://doi.org/10.1186/1471-2334-11-336
Dupieux C, Trouillet-Assant S, Tasse J, Freydière AM, Raulin O, Roure-Sobas C, Salord H, Tigaud S, Laurent F (2016) Evaluation of a commercial immunochromatographic assay for rapid routine identification of PBP2a-positive Staphylococcus aureus and coagulase-negative staphylococci. Diagn Microbiol Infect Dis 86(3):262–264
Xu Z, Hou Y, Peters BM, Chen D, Li B, Li L, Shirtliff ME (2016) Chromogenic media for MRSA diagnostics. Mol Biol Rep 43:1205–1212
Palavecino E (2014) Clinical, epidemiologic, and laboratory aspects of methicillin-resistant Staphylococcus aureus infections. Methods Mol Biol 1085:1–24
Trienski TL, Barrett HL, Pasquale TR, DiPersio JR, File TM Jr (2013) Evaluation and use of a rapid Staphylococcus aureus assay by an antimicrobial stewardship program. Am J Health Syst Pharm 70:1908–1912
Dupieux C, Bouchiat C, Larsen AR, Pichon B, Holmes M, Teale C, Edwards G, Hill R, Decousser JW, Trouillet-Assant S, Petersen A, Skov R, Kearns A, Laurent F (2017) Detection of mecC-positive Staphylococcus aureus: what to expect from immunological tests targeting PBP2a? J Clin Microbiol 55(6):1961–1963
Kohner P, Uhl J, Kolbert C, Persing D, Cockerill F 3rd (1999) Comparison of susceptibility testing methods with mecA gene analysis for determining oxacillin (methicillin) resistance in clinical isolates of Staphylococcus aureus and coagulase-negative Staphylococcus spp. J Clin Microbiol 37:2952–2961
Becker K, Ballhausen B, Köck R, Kriegeskorte A (2014) A methicillin resistance in Staphylococcus isolates: the “mec alphabet” with specific consideration of mecC, a mec homolog associated with zoonotic S. aureus lineages. Int J Med Microbiol 304(7):794–804
Paterson GK, Harrison EM, Holmes MA (2014) The emergence of mecC methicillin-resistant Staphylococcus aureus. Trends Microbiol 22(1):42–47
Becker K, van Alen S, Idelevich EA, Schleimer N, Seggewiß J, Mellmann A, Kaspar U, Peters G (2018) Plasmid-encoded transferable mecB-mediated methicillin resistance in Staphylococcus aureus. Emerg Infect Dis 24(2):242–248
Morris K, Wilson C, Wilcox MH (2012) Evaluation of chromogenic methicillin-resistant Staphylococcus aureus media: sensitivity versus turnaround time. J Hosp Infect 81:20–24
Veenemans J, Verhulst C, Punselie R, van Keulen PH, Kluytmans JA (2013) Evaluation of brilliance MRSA 2 agar for detection of methicillin-resistant Staphylococcus aureus in clinical samples. J Clin Microbiol 51(3):1026–1027
Dodémont M, Verhulst C, Nonhoff C, Nagant C, Denis O, Kluytmans J (2015) Prospective two-center comparison of three chromogenic agars for methicillin-resistant Staphylococcus aureus screening in hospitalized patients. J Clin Microbiol 53(9):3014–3016
Theel ES (2013) Matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial and fungal isolates. Clin Microbiol Newslett 35(19):155–161
Singhal N, Kumar M, Kanaujia PK, Virdi JS (2015) MALDI-TOF mass spectrometry: an emerging technology for microbial identification and diagnosis. Front Microbiol 6:791. https://doi.org/10.3389/fmicb.2015.00791
Lévesque S, Dufresne PJ, Soualhine H, Domingo MC, Bekal S, Lefebvre B, Tremblay C (2015) A side by side comparison of Bruker Biotyper and VITEK MS: utility of MALDI-TOF MS technology for microorganism identification in a public health reference laboratory. PLoS One 10(12):e0144878
Vrioni G, Tsiamis C, Oikonomidis G, Theodoridou K, Kapsimali V, Tsakris A (2018) MALDI-TOF mass spectrometry technology for detecting biomarkers of antimicrobial resistance: current achievements and future perspectives. Ann Transl Med 6(12):240
Lange C, Schubert S, Jung J, Kostrzewa M, Sparbier K (2014) Quantitative matrix assisted laser desorption ionization-time of flight mass spectrometry for rapid resistance detection. J Clin Microbiol 52:4155–4162
Oliveira K, Procop GW, Wilson D, Coull J, Stender H (2002) Rapid identification of Staphylococcus aureus directly from blood cultures by fluorescence in situ hybridization with peptide nucleic acid probes. J Clin Microbiol 40(1):247–251
Forrest GN, Mehta S, Weekes E, Lincalis DP, Johnson JK, Venezia RA (2006) Impact of rapid in situ hybridization testing on coagulase-negative staphylococci positive blood cultures. J Antimicrob Chemother 58(1):154–158
Harbarth S, Hawkey PM, Tenover F, Stefani S, Pantosti A, Struelens MJ (2011) Update on screening and clinical diagnosis of methicillin-resistant Staphylococcus aureus (MRSA). Int J Antimicrob Agents 37:110–117
Baby N, Faust AC, Smith T, Sheperd LA, Knoll L, Goodman EL (2017) Nasal methicillin-resistant Staphylococcus aureus (MRSA) PCR testing reduces the duration of MRSA-targeted therapy in patients with suspected MRSA pneumonia. Antimicrob Agents Chemother 61(4):pii: e02432–16
Blanc DS, Basset P, Nahimana-Tessemo I, Jaton K, Greub G, Zanetti G (2011) High proportion of wrongly identified methicillin-resistant Staphylococcus aureus carriers by use of a rapid commercial PCR assay due to presence of staphylococcal cassette chromosome element lacking the mecA gene. J Clin Microbiol 49:722–724
Wong H, Louie L, Lo RY, Simor AE (2010) Characterization of Staphylococcus aureus isolates with a partial or complete absence of staphylococcal cassette chromosome elements. J Clin Microbiol 48:3525–3531
Mendes RE, Watters AA, Rhomberg PR, Farrell DJ, Jones RN (2016) Performance of BD max StaphSR for screening of methicillin-resistant Staphylococcus aureus isolates among a contemporary and diverse collection from 146 institutions located in nine U.S. Census regions: prevalence of mecA dropout mutants. J Clin Microbiol 54(1):204–207
Rabaan AA, Bazzi AM (2017) Variation in MRSA identification results from different generations of Xpert MRSA real-time PCR testing kits from nasal swabs. J Infect Public Health 10:799–802
Palavecino E (2010) Make the move to molecular diagnostics. MLO Med Lab Obs 42:10, 12, 14
FDA Medical Devices Databases. 510(k) Premarket notification. https://www.accessdata.fda.gov/scripts/cdrh/cfdocs/cfPMN/pmn.cfm. Accessed 05 Nov 2018
Yarbrough ML, Warren DK, Allen K, Burkholder D, Daum R, Donskey C, Knaack D, LaMarca A, May L, Miller LG, Parenti DM, Peterson L, Tan TY, Widen R, Hernandez DR, Wolk DM, Burnham CA (2017) Multicenter evaluation of the Xpert MRSA NxG assay for detection of methicillin-resistant Staphylococcus aureus in nasal swabs. J Clin Microbiol 56(1):pii: e01381–17
Lepainteur M, Delattre S, Cozza S, Lawrence C, Roux AL, Rottman M (2015) Comparative evaluation of two PCR-based methods for detection of methicillin-resistant Staphylococcus aureus (MRSA): Xpert MRSA gen 3 and BD-max MRSA XT. J Clin Microbiol 53(6):1955–1958
Peterson LR, Woods CW, Davis TE Jr, Wang ZX, Young SA, Osiecki JC, Lewinski MA, Liesenfeld O (2017) Performance of the cobas MRSA/SA test for simultaneous detection of methicillin-susceptible and methicillin-resistant Staphylococcus aureus from nasal swabs. Am J Clin Pathol 148(2):119–127
Silbert S, Kubasek C, Galambo F, Vendrone E, Widen R (2015) Evaluation of BD max StaphSR and BD max MRSAXT assays using ESwab-collected specimens. J Clin Microbiol 53(8):2525–2529
Peterson LR, Liesenfeld O, Woods CW, Allen SD, Pombo D, Patel PA, Mehta MS, Nicholson B, Fuller D, Onderdonk A (2010) Multicenter evaluation of the LightCycler methicillin-resistant Staphylococcus aureus (MRSA) advanced test as a rapid method for detection of MRSA in nasal surveillance swabs. J Clin Microbiol 48:1661–1666
Patel PA, Robicsek A, Grayes A, Schora DM, Peterson KE, Wright MO, Peterson LR (2015) Evaluation of multiple real-time PCR tests on nasal samples in a large MRSA surveillance program. Am J Clin Pathol 143(5):652–658
Shumoski S, NucliSENS EasyQ MRSA (2011) Improved design and robust performance in a rapid molecular screening assay. BioMerieux Connection Newsletter. September 2011, Pages 2–4
Food and Drug Administration. Medical Devices Databases. NucliSENS EasyQ MRSA. 510 (k) Summary. https://www.accessdata.fda.gov/cdrh_docs/reviews/K102740.pdf. Accessed 10 Nov 2018
Kumar A, Roberts D, Wood KE, Light B, Parrillo JE, Sharma S, Suppes R, Feinstein D, Zanotti S, Taiberg L, Gurka D, Kumar A, Cheang M (2006) Duration of hypotension before initiation of effective antimicrobial therapy is the critical determinant of survival in human septic shock. Crit Care Med 34:1589–1596
Palavecino E (2015) The use of multiplex PCR for diagnosis of infectious syndromes. Clinical Laboratory News. https://www.aacc.org/publications/cln/articles/2015/april/one-sample-multiple-results. Accessed 05 Nov 2018
Buchan BW, Allen S, Burnham CA, McElvania TeKippe E, Davis T, Levi M, Mayne D, Pancholi P, Relich RF, Thomson R, Ledeboer NA (2015) Comparison of the next-generation Xpert MRSA/SA BC assay and the GeneOhm StaphSR assay to routine culture for identification of Staphylococcus aureus and methicillin-resistant S. aureus in positive-blood-culture broths. J Clin Microbiol 53(3):804–809
Lee GH, Pang S, Coombs GW (2018) Misidentification of Staphylococcus aureus by the Cepheid Xpert MRSA/SA BC assay due to deletions in the spa gene. J Clin Microbiol 56(7):pii: e00530–18. https://doi.org/10.1128/JCM.00530-18
Luminex Website. https://www.luminexcorp.com/the-verigene-system/. Accessed 4 Nov 2018
Sullivan KV, Turner NN, Roundtree SS, Young S, Brock-Haag CA, Lacey D, Abuzaid S, Blecker-Shelly DL, Doern CD (2013) Rapid detection of gram-positive organisms by use of the Verigene gram-positive blood culture nucleic acid test and the BacT/alert pediatric FAN system in a multicenter pediatric evaluation. J Clin Microbiol 51:3579–3584
Poritz M, Blaschke AJ, Byington CL, Meyers L, Nilsson K, Jones DE, Thatcher SA, Robbins T, Lingenfelter B, Amiott E, Herbener A, Daly J, Dobrowolski SF, Teng DH, Ririe KM (2011) FilmArray, an automated nested multiplex PCR system for multi-pathogen detection: development and application to respiratory tract infection. PLoS One 6(10):e26047. https://doi.org/10.1371/journal.pone.0026047
Altun O, Almuhayawi M, Ullberg M, Ozenci V (2013) Clinical evaluation of the FilmArray blood culture identification panel in identification of bacteria and yeasts from positive blood culture bottles. J Clin Microbiol 51(12):4130–4136
Salimnia H, Fairfax MR, Lephart PR, Schreckenberger P, DesJarlais SM, Johnson JK, Robinson G, Carroll KC, Greer A, Morgan M, Chan R, Loeffelholz M, Valencia-Shelton F, Jenkins S, Schuetz AN, Daly JA, Barney T, Hemmert A, Kanack KJ (2016) Evaluation of the FilmArray blood culture identification panel: results of a multicenter controlled trial. J Clin Microbiol 54:687–698
Ray ST, Drew RJ, Hardiman F, Pizer B, Riordan A (2016) Rapid identification of microorganisms by FilmArray blood culture identification panel improves clinical Management in Children. Pediatr Infect Dis J 35(5):e134–e138
Inglis TJ, Bzdyl N, Chua IL, Urosevic NM, Leung MJ, Geelhoed E (2016) Improved blood culture identification by FilmArray in cultures from regional hospitals compared with teaching hospital cultures. J Med Microbiol 65(1):56–61
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I thank Carlos A. Fasola for helpful editorial suggestions to the manuscript.
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Palavecino, E.L. (2020). Rapid Methods for Detection of MRSA in Clinical Specimens. In: Ji, Y. (eds) Methicillin-Resistant Staphylococcus Aureus (MRSA) Protocols. Methods in Molecular Biology, vol 2069. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9849-4_2
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