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medaka
medaka
written in Python
75
Citations
Citing Articles
Title
Journal
Year
Citations
Plant species-specific basecaller improves actual accuracy of nanopore sequencing
CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes
0
Complete Genome Sequence of Staphylococcus edaphicus Strain CCM 8731
Nanopore Sequencing for De Novo Bacterial Genome Assembly and Search for Single-Nucleotide Polymorphism
2022
1
Assessment of Rapid MinION Nanopore DNA Virus Meta-Genomics Using Calves Experimentally Infected with Bovine Herpes Virus-1
2022
0
Diagnostic value of a nanopore sequencing assay of bronchoalveolar lavage fluid in smear- negative pulmonary tuberculosis
Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in
Staphylococcus aureus
strains
Polishing
de novo
nanopore assemblies of bacteria and eukaryotes with FMLRC2
0
Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities
PLoS Neglected Tropical Diseases
2022
Draft Genome Sequence of Kazachstania bovina Yeast Isolated from Human Infection
Mycopathologia
0
Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen,
Klebsiella pneumoniae
0
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data
MicrobiologyOpen
2022
Utilisation of Oxford Nanopore sequencing to generate six complete gastropod mitochondrial genomes as part of a biodiversity curriculum
Scientific Reports
2022
2
PIMGAVir and Vir-MinION: Two Viral Metagenomic Pipelines for Complete Baseline Analysis of 2nd and 3rd Generation Data
Viruses
2022
Assembly and Comparison of Ca. Neoehrlichia mikurensis Genomes
Microorganisms
2022
1
Comparative genomics of the Western Hemisphere soft tick-borne relapsing fever borreliae highlights extensive plasmid diversity
BMC Genomics
2022
2
Isolation and Genome Analysis of an Amoeba-Associated Bacterium Dyella terrae Strain Ely Copper Mine From Acid Rock Drainage in Vermont, United States
Frontiers in Microbiology
2022
0
Whole-Genome Sequencing Of Omicron Identified Multiple Outbreaks And Introduction Events In India During November 2021 and January 2022
0
Transmission of Klebsiella strains and plasmids within and between Grey-headed flying fox colonies.
Environmental Microbiology
2022
A deep dive into genome assemblies of non-vertebrate animals
Updated Genome Sequence of the Facultative Methanotroph sp. Strain SB2.
Microbiology Resource Announcements
2022
Genomics of Post-Vaccination SARS-CoV-2 Infections During the Delta Dominated Second Wave of COVID-19 Pandemic, from Mumbai Metropolitan Region (MMR), India.
Journal of Medical Virology
2022
1
LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads
GigaByte
Clair3-Trio: high-performance Nanopore long-read variant calling in family trios with Trio-to-Trio deep neural networks
1
Assembling Plant Genomes with Long-Read Sequencing.
Methods in Molecular Biology
2022
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