| # | Title | Journal | Year | Citations |
|---|
|
| 1 | Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7 | Systematic Biology | 2018 | 7,378 |
| 2 | Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) | Autophagy | 2016 | 4,789 |
| 3 | IDF Diabetes Atlas: Global estimates for the prevalence of diabetes for 2015 and 2040 | Diabetes Research and Clinical Practice | 2017 | 4,230 |
| 4 | Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 | Virus Evolution | 2018 | 2,634 |
| 5 | Structure and function of the global ocean microbiome | Science | 2015 | 2,271 |
| 6 | Prediction models for diagnosis and prognosis of covid-19: systematic review and critical appraisal | BMJ, The | 2020 | 2,238 |
| 7 | SUGAR SENSING AND SIGNALING IN PLANTS: Conserved and Novel Mechanisms | Annual Review of Plant Biology | 2006 | 1,960 |
| 8 | Inborn errors of type I IFN immunity in patients with life-threatening COVID-19 | Science | 2020 | 1,839 |
| 9 | Population-level analysis of gut microbiome variation | Science | 2016 | 1,796 |
| 10 | Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota | Nature | 2015 | 1,708 |
| 11 | Eukaryotic plankton diversity in the sunlit ocean | Science | 2015 | 1,624 |
| 12 | Human gut microbes impact host serum metabolome and insulin sensitivity | Nature | 2016 | 1,611 |
| 13 | Bayesian Phylogeography Finds Its Roots | PLoS Computational Biology | 2009 | 1,578 |
| 14 | A decrease of the butyrate-producing speciesRoseburia hominisandFaecalibacterium prausnitziidefines dysbiosis in patients with ulcerative colitis | Gut | 2014 | 1,439 |
| 15 | Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study | Nature Medicine | 2019 | 1,398 |
| 16 | Vitamin D: Metabolism, Molecular Mechanism of Action, and Pleiotropic Effects | Physiological Reviews | 2016 | 1,356 |
| 17 | The neuroactive potential of the human gut microbiota in quality of life and depression | Nature Microbiology | 2019 | 1,304 |
| 18 | Considerable escape of SARS-CoV-2 Omicron to antibody neutralization | Nature | 2022 | 1,295 |
| 19 | Real-time, portable genome sequencing for Ebola surveillance | Nature | 2016 | 1,234 |
| 20 | Phenotype molding of stromal cells in the lung tumor microenvironment | Nature Medicine | 2018 | 1,212 |
| 21 | Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil | Science | 2021 | 1,197 |
| 22 | Microglia emerge from erythromyeloid precursors via Pu.1- and Irf8-dependent pathways | Nature Neuroscience | 2013 | 1,165 |
| 23 | Approved Antiviral Drugs over the Past 50 Years | Clinical Microbiology Reviews | 2016 | 1,107 |
| 24 | Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty | Molecular Biology and Evolution | 2012 | 1,087 |
| 25 | Global guideline for the diagnosis and management of mucormycosis: an initiative of the European Confederation of Medical Mycology in cooperation with the Mycoses Study Group Education and Research Consortium | Lancet Infectious Diseases, The | 2019 | 1,083 |
| 26 | How informative is the mouse for human gut microbiota research? | DMM Disease Models and Mechanisms | 2015 | 1,034 |
| 27 | Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes | Nature Biotechnology | 2014 | 964 |
| 28 | Large-scale association analyses identify host factors influencing human gut microbiome composition | Nature Genetics | 2021 | 922 |
| 29 | Determinants of community structure in the global plankton interactome | Science | 2015 | 885 |
| 30 | A randomized trial of normothermic preservation in liver transplantation | Nature | 2018 | 864 |
| 31 | Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG) | Archives of Virology | 2011 | 850 |
| 32 | Quantitative microbiome profiling links gut community variation to microbial load | Nature | 2017 | 843 |
| 33 | Definitions and guidelines for research on antibiotic persistence | Nature Reviews Microbiology | 2019 | 821 |
| 34 | Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic | Nature Microbiology | 2020 | 820 |
| 35 | Full Genome-Based Classification of Rotaviruses Reveals a Common Origin between Human Wa-Like and Porcine Rotavirus Strains and Human DS-1-Like and Bovine Rotavirus Strains | Journal of Virology | 2008 | 810 |
| 36 | A novel selective broad-spectrum anti-DNA virus agent | Nature | 1986 | 784 |
| 37 | Enterotypes in the landscape of gut microbial community composition | Nature Microbiology | 2018 | 783 |
| 38 | Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates | Gut | 2016 | 778 |
| 39 | The resilience of the intestinal microbiota influences health and disease | Nature Reviews Microbiology | 2017 | 755 |
| 40 | Animal models for COVID-19 | Nature | 2020 | 745 |
| 41 | Minimum Information about a Biosynthetic Gene cluster | Nature Chemical Biology | 2015 | 743 |
| 42 | Plankton networks driving carbon export in the oligotrophic ocean | Nature | 2016 | 699 |
| 43 | Regional variation limits applications of healthy gut microbiome reference ranges and disease models | Nature Medicine | 2018 | 677 |
| 44 | Invasive aspergillosis in patients admitted to the intensive care unit with severe influenza: a retrospective cohort study | Lancet Respiratory Medicine,the | 2018 | 667 |
| 45 | Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments | Archives of Virology | 2008 | 659 |
| 46 | Fundamental properties of unperturbed haematopoiesis from stem cells in vivo | Nature | 2015 | 646 |
| 47 | Concepts and Principles of O-Linked Glycosylation | Critical Reviews in Biochemistry and Molecular Biology | 1998 | 642 |
| 48 | Correlation detection strategies in microbial data sets vary widely in sensitivity and precision | ISME Journal | 2016 | 627 |
| 49 | Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts | Cell | 2016 | 619 |
| 50 | Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time | Molecular Biology and Evolution | 2010 | 608 |
