| # | Title | Journal | Year | Citations |
|---|
|
| 1 | The genome of the cucumber, Cucumis sativus L. | Nature Genetics | 2009 | 1,347 |
| 2 | Genomic variation in 3,010 diverse accessions of Asian cultivated rice | Nature | 2018 | 1,190 |
| 3 | Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome | Nature Biotechnology | 2019 | 1,123 |
| 4 | Genomic analyses provide insights into the history of tomato breeding | Nature Genetics | 2014 | 839 |
| 5 | Rewiring of the Fruit Metabolome in Tomato Breeding | Cell | 2018 | 657 |
| 6 | Copy number variation at the GL7 locus contributes to grain size diversity in rice | Nature Genetics | 2015 | 508 |
| 7 | A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity | Nature Genetics | 2013 | 484 |
| 8 | The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor | Nature Genetics | 2019 | 478 |
| 9 | Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits | Nature Genetics | 2018 | 434 |
| 10 | A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice | Molecular Plant | 2015 | 410 |
| 11 | Biosynthesis, regulation, and domestication of bitterness in cucumber | Science | 2014 | 407 |
| 12 | Penaeid shrimp genome provides insights into benthic adaptation and frequent molting | Nature Communications | 2019 | 361 |
| 13 | Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution | Cell | 2019 | 355 |
| 14 | Off-target RNA mutation induced by DNA base editing and its elimination by mutagenesis | Nature | 2019 | 353 |
| 15 | Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea | Nature Genetics | 2016 | 313 |
| 16 | Rational design of high-yield and superior-quality rice | Nature Plants | 2017 | 312 |
| 17 | Gene retention, fractionation and subgenome differences in polyploid plants | Nature Plants | 2018 | 282 |
| 18 | Efficient targeted mutagenesis in potato by the CRISPR/Cas9 system | Plant Cell Reports | 2015 | 253 |
| 19 | Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts | Nature Plants | 2020 | 249 |
| 20 | Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus | PLoS Genetics | 2014 | 246 |
| 21 | Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits | Nature Genetics | 2019 | 246 |
| 22 | Mutation of the Rice Narrow leaf1 Gene, Which Encodes a Novel Protein, Affects Vein Patterning and Polar Auxin Transport | Plant Physiology | 2008 | 244 |
| 23 | RNA-Seq improves annotation of protein-coding genes in the cucumber genome | BMC Genomics | 2011 | 237 |
| 24 | An Integrated Genetic and Cytogenetic Map of the Cucumber Genome | PLoS ONE | 2009 | 234 |
| 25 | Short panicle1 encodes a putative PTR family transporter and determines rice panicle size | Plant Journal | 2009 | 216 |
| 26 | Transcriptional regulation of strigolactone signalling in Arabidopsis | Nature | 2020 | 215 |
| 27 | The release of dormancy, a wake-up call for seeds to germinate | Current Opinion in Plant Biology | 2017 | 213 |
| 28 | Programmable RNA editing with compact CRISPR–Cas13 systems from uncultivated microbes | Nature Methods | 2021 | 213 |
| 29 | Triticum population sequencing provides insights into wheat adaptation | Nature Genetics | 2020 | 204 |
| 30 | Convergence and divergence of bitterness biosynthesis and regulation in Cucurbitaceae | Nature Plants | 2016 | 198 |
| 31 | DELAY OF GERMINATION1 requires PP2C phosphatases of the ABA signalling pathway to control seed dormancy | Nature Communications | 2017 | 198 |
| 32 | Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis | Nature Genetics | 2021 | 195 |
| 33 | Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing | Nature Biotechnology | 2011 | 192 |
| 34 | A proposed regulatory framework for genome-edited crops | Nature Genetics | 2016 | 192 |
| 35 | Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops | Nucleic Acids Research | 2019 | 190 |
| 36 | Breeding high-yield superior quality hybrid super rice by rational design | National Science Review | 2016 | 186 |
| 37 | Graph pangenome captures missing heritability and empowers tomato breeding | Nature | 2022 | 181 |
| 38 | Engineering Non-transgenic Gynoecious Cucumber Using an Improved Transformation Protocol and Optimized CRISPR/Cas9 System | Molecular Plant | 2017 | 178 |
| 39 | Identification and characterization of the zinc-regulated transporters, iron-regulated transporter-like protein (ZIP) gene family in maize | BMC Plant Biology | 2013 | 177 |
| 40 | A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits | Nature Genetics | 2019 | 172 |
| 41 | The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems | PLoS Genetics | 2016 | 172 |
| 42 | Domestication selected for deceleration of the circadian clock in cultivated tomato | Nature Genetics | 2016 | 171 |
| 43 | The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency | Nature Communications | 2019 | 167 |
| 44 | Generation of self-compatible diploid potato by knockout of S-RNase | Nature Plants | 2018 | 163 |
| 45 | Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types | BMC Genomics | 2010 | 162 |
| 46 | Genome evolution and diversity of wild and cultivated potatoes | Nature | 2022 | 161 |
| 47 | A chromosome-scale genome assembly of cucumber (Cucumis sativus L.) | GigaScience | 2019 | 160 |
| 48 | Haplotype-resolved genome analyses of a heterozygous diploid potato | Nature Genetics | 2020 | 160 |
| 49 | A natural tandem array alleviates epigenetic repression of IPA1 and leads to superior yielding rice | Nature Communications | 2017 | 156 |
| 50 | Genetic Control of a Transition from Black to Straw-White Seed Hull in Rice Domestication | Plant Physiology | 2011 | 155 |
