Evolutionary Biology

112(top 2%)

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2.4K(top 5%)

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28(top 2%)

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47(top 5%)

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183

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3.7K

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856

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#	Title	Journal	Year	Citations
1	IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences	Microbiome	2018	367
2	De novo gene birth	PLoS Genetics	2019	252
3	scds: computational annotation of doublets in single-cell RNA sequencing data	Bioinformatics	2020	171
4	Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle	ELife	2019	127
5	Standardized annotation of translated open reading frames	Nature Biotechnology	2022	112
6	Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes	ELife	2020	111
7	De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences	Nature Communications	2020	96
8	Systematic detection of horizontal gene transfer across genera among multidrug-resistant bacteria in a single hospital	ELife	2020	93
9	Experimental Evolution as a High-Throughput Screen for Genetic Adaptations	MSphere	2018	92
10	Control of cytokinesis by β-adrenergic receptors indicates an approach for regulating cardiomyocyte endowment	Science Translational Medicine	2019	83
11	Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome	Cell Systems	2020	80
12	Parallel Evolution of Tobramycin Resistance across Species and Environments	MBio	2020	67
13	The gut microbiome influences host diet selection behavior	Proceedings of the National Academy of Sciences of the United States of America	2022	65
14	Pan-mammalian analysis of molecular constraints underlying extended lifespan	ELife	2020	61
15	The meanings of 'function' in biology and the problematic case of de novo gene emergence	ELife	2019	59
16	Gazing into the anthosphere: considering how microbes influence floral evolution	New Phytologist	2019	56
17	Large-scale inference of competing endogenous RNA networks with sparse partial correlation	Bioinformatics	2019	52
18	Whole-Genome Sequencing Surveillance and Machine Learning of the Electronic Health Record for Enhanced Healthcare Outbreak Detection	Clinical Infectious Diseases	2022	52
19	CRISPR/Cas9-mediated gene knockin in the hydroid Hydractinia symbiolongicarpus	BMC Genomics	2018	50
20	Genome-wide enhancer annotations differ significantly in genomic distribution, evolution, and function	BMC Genomics	2019	44
21	Pseudomonas aeruginosa Interstrain Dynamics and Selection of Hyperbiofilm Mutants during a Chronic Infection	MBio	2019	41
22	The colonial cnidarian Hydractinia	EvoDevo	2020	41
23	Random forest based similarity learning for single cell RNA sequencing data	Bioinformatics	2018	40
24	Poison frog color morphs express assortative mate preferences in allopatry but not sympatry	Evolution; International Journal of Organic Evolution	2016	39
25	Emergence of an early SARS-CoV-2 epidemic in the United States	Cell	2021	39
26	In Vitro Susceptibility of Multidrug-Resistant Pseudomonas aeruginosa following Treatment-Emergent Resistance to Ceftolozane-Tazobactam	Antimicrobial Agents and Chemotherapy	2021	37
27	Bacterial evolution during human infection: Adapt and live or adapt and die	PLoS Pathogens	2021	36
28	Invader disruption of belowground plant mutualisms reduces carbon acquisition and alters allocation patterns in a native forest herb	New Phytologist	2016	35
29	Periodic Variation of Mutation Rates in Bacterial Genomes Associated with Replication Timing	MBio	2018	31
30	Outbreak of Pseudomonas aeruginosa Infections from a Contaminated Gastroscope Detected by Whole Genome Sequencing Surveillance	Clinical Infectious Diseases	2021	31
31	New Insights from Elucidating the Role of LMP1 in Nasopharyngeal Carcinoma	Cancers	2018	30
32	Identification of antibiotic pairs that evade concurrent resistance via a retrospective analysis of antimicrobial susceptibility test results	Lancet Microbe, The	2021	28
33	Of mice, men and immunity: a case for evolutionary systems biology	Nature Immunology	2018	27
34	Developmental Loci Harbor Clusters of Accelerated Regions That Evolved Independently in Ape Lineages	Molecular Biology and Evolution	2018	26
35	Structural basis of DSF recognition by its receptor RpfR and its regulatory interaction with the DSF synthase RpfF	PLoS Biology	2019	26
36	Non-Uniform and Non-Random Binding of Nucleoprotein to Influenza A and B Viral RNA	Viruses	2018	25
37	Hidden resources in the Escherichia coli genome restore PLP synthesis and robust growth after deletion of the essential gene pdxB	Proceedings of the National Academy of Sciences of the United States of America	2019	25
38	The roles of history, chance, and natural selection in the evolution of antibiotic resistance	ELife	2021	25
39	Adaptation and genomic erosion in fragmented Pseudomonas aeruginosa populations in the sinuses of people with cystic fibrosis	Cell Reports	2021	25
40	Uncompensated mitochondrial oxidative stress underlies heart failure in an iPSC-derived model of congenital heart disease	Cell Stem Cell	2022	25
41	Computational profiling of hiPSC-derived heart organoids reveals chamber defects associated with NKX2-5 deficiency	Communications Biology	2022	25
42	Evolution of organismal stoichiometry in a long-term experiment withEscherichia coli	Royal Society Open Science	2017	24
43	Polygenic Adaptation and Clonal Interference Enable Sustained Diversity in ExperimentalPseudomonas aeruginosaPopulations	Molecular Biology and Evolution	2021	23
44	Evolution of Imipenem-Relebactam Resistance Following Treatment of Multidrug-Resistant Pseudomonas aeruginosa Pneumonia	Clinical Infectious Diseases	2022	23
45	Single-cell transcriptomic analysis identifies murine heart molecular features at embryonic and neonatal stages	Nature Communications	2022	23
46	A vast evolutionarily transient translatome contributes to phenotype and fitness	Cell Systems	2023	22
47	Invertebrate allorecognition	Current Biology	2019	21
48	Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals	MicrobiologyOpen	2021	21
49	Immunosuppression broadens evolutionary pathways to drug resistance and treatment failure during Acinetobacter baumannii pneumonia in mice	Nature Microbiology	2022	21
50	Embryonic chimerism does not induce tolerance in an invertebrate model organism	Proceedings of the National Academy of Sciences of the United States of America	2007	20

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Evolutionary Biology

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