| Real-time evolution using the density matrix renormalization group | Physical Review Letters | 2004 | 874 |
| Evidence for an oscillatory signature in atmospheric neutrino oscillations | Physical Review Letters | 2004 | 459 |
| Resonance effects indicate a radical-pair mechanism for avian magnetic compass | Nature | 2004 | 419 |
| Multiphase galaxy formation: high-velocity clouds and the missing baryon problem | Monthly Notices of the Royal Astronomical Society | 2004 | 356 |
| Differences between smokers and nonsmokers in regional gray matter volumes and densities | Biological Psychiatry | 2004 | 313 |
| Antineutrino spectroscopy with large water Cerenkov detectors | Physical Review Letters | 2004 | 278 |
| Vibronic states in single molecule electron transport | Physical Review Letters | 2004 | 268 |
| Search for dark matter WIMPs using upward through-going muons in Super-Kamiokande | Physical Review D | 2004 | 211 |
| Mechanisms of reversible conformational transitions in a single molecule | Physical Review Letters | 2004 | 206 |
| Control of relative tunneling rates in single molecule bipolar electron transport | Physical Review Letters | 2004 | 188 |
| Generation of dynamic temporal and spatial concentration gradients using microfluidic devices | Lab on A Chip | 2004 | 178 |
| Muon track reconstruction and data selection techniques in AMANDA | Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment | 2004 | 157 |
| Precise measurement of the solar neutrino day-night and seasonal variation in Super-Kamiokande-I | Physical Review D | 2004 | 155 |
| SuperWIMP gravitino dark matter from slepton and sneutrino decays | Physical Review D | 2004 | 125 |
| Attenuation of cue-induced cigarette craving and anterior cingulate cortex activation in bupropion-treated smokers: a preliminary study | Psychiatry Research - Neuroimaging | 2004 | 123 |
| Effective neutrophil chemotaxis is strongly influenced by mean IL-8 concentration | Biochemical and Biophysical Research Communications | 2004 | 118 |
| O-sulfonation of serine and threonine: mass spectrometric detection and characterization of a new posttranslational modification in diverse proteins throughout the eukaryotes | Molecular and Cellular Proteomics | 2004 | 108 |
| Turbulence spreading and transport scaling in global gyrokinetic particle simulations | Physics of Plasmas | 2004 | 106 |
| The effects of age on red giant metallicities derived from the near-infrared Ca II triplet | Monthly Notices of the Royal Astronomical Society | 2004 | 105 |
| Neutrino oscillation physics with a higher-γ β-beam | Nuclear Physics B | 2004 | 102 |
| Velocity Profiles in Slowly Sheared Bubble Rafts | Physical Review Letters | 2004 | 79 |
| Manipulation of spin reorientation transition by oxygen surfactant growth: a combined theoretical and experimental approach | Physical Review Letters | 2004 | 71 |
| Intracellular actin-based transport: how far you go depends on how often you switch | Proceedings of the National Academy of Sciences of the United States of America | 2004 | 70 |
| Search for extraterrestrial point sources of neutrinos with AMANDA-II | Physical Review Letters | 2004 | 62 |
| Search for neutrino-induced cascades with AMANDA | Astroparticle Physics | 2004 | 60 |
