| Automated reconstruction of whole-genome phylogenies from short-sequence reads | Molecular Biology and Evolution | 2014 | 245 |
| Niche filling slows the diversification of Himalayan songbirds | Nature | 2014 | 239 |
| Life cycles, fitness decoupling and the evolution of multicellularity | Nature | 2014 | 120 |
| Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice | Proceedings of the National Academy of Sciences of the United States of America | 2014 | 107 |
| Cooperation and control in multiplayer social dilemmas | Proceedings of the National Academy of Sciences of the United States of America | 2014 | 83 |
| Aspiration dynamics of multi-player games in finite populations | Journal of the Royal Society Interface | 2014 | 81 |
| The ecology and evolution of non-domesticated Saccharomyces species | Yeast | 2014 | 77 |
| The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography | American Journal of Respiratory and Critical Care Medicine | 2014 | 71 |
| Type I interferon signalling in the intestinal epithelium affects Paneth cells, microbial ecology and epithelial regeneration | Gut | 2014 | 68 |
| Consumer co-evolution as an important component of the eco-evolutionary feedback | Nature Communications | 2014 | 68 |
| Genome-wide mapping in a house mouse hybrid zone reveals hybrid sterility loci and Dobzhansky-Muller interactions | ELife | 2014 | 65 |
| First steps towards underdominant genetic transformation of insect populations | PLoS ONE | 2014 | 63 |
| The biosurfactant viscosin produced by Pseudomonas fluorescens SBW25 aids spreading motility and plant growth promotion | Environmental Microbiology | 2014 | 62 |
| Democratic decisions establish stable authorities that overcome the paradox of second-order punishment | Proceedings of the National Academy of Sciences of the United States of America | 2014 | 60 |
| Extensive copy-number variation of young genes across stickleback populations | PLoS Genetics | 2014 | 56 |
| Genomic networks of hybrid sterility | PLoS Genetics | 2014 | 55 |
| Evolutionary Multiplayer Games | Dynamic Games and Applications | 2014 | 54 |
| Female mate choice can drive the evolution of high frequency echolocation in bats: a case study with Rhinolophus mehelyi | PLoS ONE | 2014 | 53 |
| Effects of global environmental changes on parasitoid–host food webs and biological control | Biological Control | 2014 | 53 |
| A role for ultrasonic vocalisation in social communication and divergence of natural populations of the house mouse (Mus musculus domesticus) | PLoS ONE | 2014 | 49 |
| Hybridization facilitates evolutionary rescue | Evolutionary Applications | 2014 | 46 |
| Sanctions as honest signals--the evolution of pool punishment by public sanctioning institutions | Journal of Theoretical Biology | 2014 | 45 |
| Dual fuels: intra-annual variation in the relative importance of benthic and pelagic resources to maintenance, growth and reproduction in a generalist salmonid fish | Journal of Animal Ecology | 2014 | 42 |
| Counterintuitive properties of the fixation time in network-structured populations | Journal of the Royal Society Interface | 2014 | 37 |
| The more the better - polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra) | Molecular Ecology | 2014 | 36 |
