Effect of the damping function in dispersion corrected density functional theory | Journal of Computational Chemistry | 2011 | 10.4K |
UCHIME improves sensitivity and speed of chimera detection | Bioinformatics | 2011 | 9.4K |
FLASH: fast length adjustment of short reads to improve genome assemblies | Bioinformatics | 2011 | 6.8K |
The variant call format and VCFtools | Bioinformatics | 2011 | 6.2K |
Cytoscape 2.8: new features for data integration and network visualization | Bioinformatics | 2011 | 3.3K |
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data | Bioinformatics | 2011 | 3.1K |
Quality control and preprocessing of metagenomic datasets | Bioinformatics | 2011 | 3K |
Molecular signatures database (MSigDB) 3.0 | Bioinformatics | 2011 | 2.5K |
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications | Bioinformatics | 2011 | 2.5K |
FIMO: scanning for occurrences of a given motif | Bioinformatics | 2011 | 2.1K |
ProtTest 3: fast selection of best-fit models of protein evolution | Bioinformatics | 2011 | 1.9K |
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers | Bioinformatics | 2011 | 1.7K |
Scaffolding pre-assembled contigs using SSPACE | Bioinformatics | 2011 | 1.7K |
phangorn: phylogenetic analysis in R | Bioinformatics | 2011 | 1.7K |
Density functional theory with London dispersion corrections | Wiley Interdisciplinary Reviews: Computational Molecular Science | 2011 | 1.6K |
Easyfig: a genome comparison visualizer | Bioinformatics | 2011 | 1.6K |
Finding Structure with Randomness: Probabilistic Algorithms for Constructing Approximate Matrix Decompositions | SIAM Review | 2011 | 1.6K |
adegenet 1.3-1: new tools for the analysis of genome-wide SNP data | Bioinformatics | 2011 | 1.5K |
Toward the estimation of the absolute quality of individual protein structure models | Bioinformatics | 2011 | 1.4K |
PaDEL-descriptor: an open source software to calculate molecular descriptors and fingerprints | Journal of Computational Chemistry | 2011 | 1.3K |
Theory and Applications of Robust Optimization | SIAM Review | 2011 | 1.3K |
HypE: an algorithm for fast hypervolume-based many-objective optimization | Evolutionary Computation | 2011 | 1.3K |
MDAnalysis: a toolkit for the analysis of molecular dynamics simulations | Journal of Computational Chemistry | 2011 | 1.2K |
Gabedit--a graphical user interface for computational chemistry softwares | Journal of Computational Chemistry | 2011 | 1.2K |
SwissParam: a fast force field generation tool for small organic molecules | Journal of Computational Chemistry | 2011 | 1K |