| The Sequence Alignment/Map format and SAMtools | Bioinformatics | 2009 | 30.8K |
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| Power-Law Distributions in Empirical Data | SIAM Review | 2009 | 5.1K |
| Tensor Decompositions and Applications | SIAM Review | 2009 | 4.9K |
| trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses | Bioinformatics | 2009 | 4.2K |
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| SOAP2: an improved ultrafast tool for short read alignment | Bioinformatics | 2009 | 2.8K |
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| A comparative study of Artificial Bee Colony algorithm | Applied Mathematics and Computation | 2009 | 2.1K |
| From Sparse Solutions of Systems of Equations to Sparse Modeling of Signals and Images | SIAM Review | 2009 | 1.5K |
| Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads | Bioinformatics | 2009 | 1.4K |
| Globally optimal stitching of tiled 3D microscopic image acquisitions | Bioinformatics | 2009 | 1.3K |
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| Probing the Pareto Frontier for Basis Pursuit Solutions | SIAM Journal of Scientific Computing | 2009 | 1K |
| Effective implementation of the ε-constraint method in Multi-Objective Mathematical Programming problems | Applied Mathematics and Computation | 2009 | 1K |
| Infernal 1.0: inference of RNA alignments | Bioinformatics | 2009 | 1K |
| PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating | Bioinformatics | 2009 | 970 |
| Community Structure in Large Networks: Natural Cluster Sizes and the Absence of Large Well-Defined Clusters | Internet Mathematics | 2009 | 931 |
