Semiempirical GGA-type density functional constructed with a long-range dispersion correction | Journal of Computational Chemistry | 2006 | 19.1K |
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models | Bioinformatics | 2006 | 12.7K |
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences | Bioinformatics | 2006 | 5.9K |
A fast and robust algorithm for Bader decomposition of charge density | Computational Materials Science | 2006 | 5.9K |
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling | Bioinformatics | 2006 | 5.8K |
COPASI--a COmplex PAthway SImulator | Bioinformatics | 2006 | 1.7K |
Pvclust: an R package for assessing the uncertainty in hierarchical clustering | Bioinformatics | 2006 | 1.6K |
SNPStats: a web tool for the analysis of association studies | Bioinformatics | 2006 | 1.4K |
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure | Bioinformatics | 2006 | 1.3K |
Bio3d: an R package for the comparative analysis of protein structures | Bioinformatics | 2006 | 947 |
OPM: orientations of proteins in membranes database | Bioinformatics | 2006 | 897 |
TimeTree: a public knowledge-base of divergence times among organisms | Bioinformatics | 2006 | 867 |
CAFE: a computational tool for the study of gene family evolution | Bioinformatics | 2006 | 723 |
A fully discrete difference scheme for a diffusion-wave system | Applied Numerical Mathematics | 2006 | 718 |
CFinder: locating cliques and overlapping modules in biological networks | Bioinformatics | 2006 | 673 |
Modified Riemann-Liouville derivative and fractional Taylor series of nondifferentiable functions further results | Computers and Mathematics With Applications | 2006 | 657 |
KaKs_Calculator: calculating Ka and Ks through model selection and model averaging | Genomics, Proteomics and Bioinformatics | 2006 | 657 |
Comparison of Bayesian and maximum-likelihood inference of population genetic parameters | Bioinformatics | 2006 | 646 |
A systematic comparison and evaluation of biclustering methods for gene expression data | Bioinformatics | 2006 | 626 |
Integrating structured biological data by Kernel Maximum Mean Discrepancy | Bioinformatics | 2006 | 621 |
Finite difference approximations for two-sided space-fractional partial differential equations | Applied Numerical Mathematics | 2006 | 619 |
The DLV system for knowledge representation and reasoning | ACM Transactions on Computational Logic | 2006 | 607 |
MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data | Bioinformatics | 2006 | 606 |
GARD: a genetic algorithm for recombination detection | Bioinformatics | 2006 | 581 |
RM1: a reparameterization of AM1 for H, C, N, O, P, S, F, Cl, Br, and I | Journal of Computational Chemistry | 2006 | 571 |