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132 peer-reviewed articles • 14,376 peer-reviewed citations • Sorted by year • Download PDF (PDF by citations)
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1Phylogenetic minimum description length: an optimality criterion based on algorithmic complexity
Cladistics, 2025, 41, 193-211
4.94Citations (PDF)
2The phylogenetic relationships of Bokermann´s treefrogs: species groups, reproductive biology, and biogeography (Anura: Hylidae: Bokermannohyla)
Cladistics, 2025, 41, 323-357
4.92Citations (PDF)
3Phylogenetic supergraphs
Cladistics, 2022, 38, 147-158
4.93Citations (PDF)
4Comprehensive Species Sampling and Sophisticated Algorithmic Approaches Refute the Monophyly of Arachnida
Molecular Biology and Evolution, 2022, 39,
3.1115Citations (PDF)
5Evidence for reduced BRCA2 functional activity in Homo sapiens after divergence from the chimpanzee-human last common ancestor
Cell Reports, 2022, 39, 110771
4.48Citations (PDF)
6Phylogenetic relationships of the Boana pulchella Group (Anura: Hylidae)
Molecular Phylogenetics and Evolution, 2021, 155, 106981
2.227Citations (PDF)
7Phylogenomic Resolution of Sea Spider Diversification through Integration of Multiple Data Classes
Molecular Biology and Evolution, 2021, 38, 686-701
3.170Citations (PDF)
8The phylogeny of Dendropsophini (Anura: Hylidae: Hylinae)
Cladistics, 2021, 37, 73-105
4.944Citations (PDF)
9Evolution in the Genus Rhinella: A Total Evidence Phylogenetic Analysis of Neotropical True Toads (Anura: Bufonidae)
Bulletin of the American Museum of Natural History, 2021, 447,
1.573Citations (PDF)
10Distance Wagner tree refinement as a heuristic approach to character‐based initial tree construction
Cladistics, 2021, 37, 829-837
4.93Citations (PDF)
11Statistical Modeling of Distribution Patterns: A Markov Random Field Implementation and Its Application on Areas of Endemism
Systematic Biology, 2020, 69, 76-90
3.24Citations (PDF)
12Comparing and displaying phylogenetic trees using edge union networks
Cladistics, 2019, 35, 688-694
4.93Citations (PDF)
13<scp>FASTC</scp>: a file format for multi‐character sequence data
Cladistics, 2019, 35, 573-575
4.91Citations (PDF)
14Revising the Bantu tree
Cladistics, 2019, 35, 329-348
4.915Citations (PDF)
15Revisiting habitat and lifestyle transitions in Heteroptera (Insecta: Hemiptera): insights from a combined morphological and molecular phylogeny
Cladistics, 2019, 35, 67-105
4.9136Citations (PDF)
16Myrmecicultoridae, a New Family of Myrmecophilic Spiders from the Chihuahuan Desert (Araneae: Entelegynae)
American Museum Novitates, 2019, 2019, 1
0.516Citations (PDF)
17On the Monophyly and Relationships of Several Genera of Hylini (Anura: Hylidae: Hylinae), with Comments on Recent Taxonomic Changes in Hylids
South American Journal of Herpetology, 2018, 13, 1
0.451Citations (PDF)
18Phylogeny of Map Tree Frogs, Boana semilineata Species Group, with a New Amazonian Species (Anura: Hylidae)
South American Journal of Herpetology, 2018, 13, 150
0.420Citations (PDF)
19Taxon cycle predictions supported by model‐based inference in Indo‐Pacific trap‐jaw ants (Hymenoptera: Formicidae: Odontomachus)
Molecular Ecology, 2018, 27, 4090-4107
2.236Citations (PDF)
20Hennig's semaphoront concept and the use of ontogenetic stages in phylogenetic reconstruction
Cladistics, 2017, 33, 93-108
4.929Citations (PDF)
21Nomenclatural stability does not justify recognition of paraphyletic taxa: A response to Scherz et al. (2016)
Molecular Phylogenetics and Evolution, 2017, 111, 56-64
2.26Citations (PDF)
22The spider tree of life: phylogeny of Araneae based on target‐gene analyses from an extensive taxon sampling
Cladistics, 2017, 33, 574-616
4.9454Citations (PDF)
23First global molecular phylogeny and biogeographical analysis of two arachnid orders (Schizomida and Uropygi) supports a tropical Pangean origin and mid‐Cretaceous diversification
Journal of Biogeography, 2017, 44, 2660-2672
2.157Citations (PDF)
24Expression and function of spineless orthologs correlate with distal deutocerebral appendage morphology across Arthropoda
Developmental Biology, 2017, 430, 224-236
1.323Citations (PDF)
25A multilocus phylogeny of Podoctidae (Arachnida, Opiliones, Laniatores) and parametric shape analysis reveal the disutility of subfamilial nomenclature in armored harvestman systematics
Molecular Phylogenetics and Evolution, 2017, 106, 164-173
2.226Citations (PDF)
26Comparison of heuristic approaches to the generalized tree alignment problem
Cladistics, 2016, 32, 452-460
4.913Citations (PDF)
27The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow‐mouthed frogs (Anura, Microhylidae)
Cladistics, 2016, 32, 113-140
4.9113Citations (PDF)
28A phylogeny of sand flies ( D iptera: P sychodidae: P hlebotominae), using recent E thiopian collections and a broad selection of publicly available DNA sequence data
Systematic Entomology, 2015, 40, 733-744
2.119Citations (PDF)
29Evidence of duplicated Hox genes in the most recent common ancestor of extant scorpions
Evolution & Development, 2015, 17, 347-355
1.627Citations (PDF)
30Forked Tongues Revisited: Molecular Apomorphies Support Morphological Hypotheses of Squamate Evolution
Copeia, 2015, 103, 525-529
2.016Citations (PDF)
31A conserved genetic mechanism specifies deutocerebral appendage identity in insects and arachnids
Proceedings of the Royal Society B: Biological Sciences, 2015, 282, 20150698
1.637Citations (PDF)
32Historical linguistics as a sequence optimization problem: the evolution and biogeography ofUto‐Aztecan languages
Cladistics, 2015, 31, 113-125
4.928Citations (PDF)
33POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria
Cladistics, 2015, 31, 189-196
4.985Citations (PDF)
34Molecular phylogeny ofIndo‐Pacific carpenter ants (Hymenoptera:Formicidae,Camponotus) reveals waves of dispersal and colonization from diverse source areas
Cladistics, 2015, 31, 424-437
4.925Citations (PDF)
35Towards Improving Searches for Optimal Phylogenies
Systematic Biology, 2015, 64, 56-65
3.23Citations (PDF)
36Phylogeography of the harvestman genus Metasiro (Arthropoda, Arachnida, Opiliones) reveals a potential solution to the Pangean paradox
Organisms Diversity and Evolution, 2015, 16, 167-184
0.517Citations (PDF)
37Exactly Computing the Parsimony Scores on Phylogenetic Networks Using Dynamic Programming
Journal of Computational Biology, 2014, 21, 303-319
0.89Citations (PDF)
38Maximum a posteriori probability assignment (<scp>MAP</scp>‐A): an optimality criterion for phylogenetic trees via weighting and dynamic programming
Cladistics, 2014, 30, 282-290
4.92Citations (PDF)
39Subdivision of arthropod cap-n-collar expression domains is restricted to Mandibulata
EvoDevo, 2014, 5, 3
1.320Citations (PDF)
40Cross-bracing uncalibrated nodes in molecular dating improves congruence of fossil and molecular age estimates
Frontiers in Zoology, 2014, 11,
1.420Citations (PDF)
41Hox gene duplications correlate with posterior heteronomy in scorpions
Proceedings of the Royal Society B: Biological Sciences, 2014, 281, 20140661
1.669Citations (PDF)
42Phylogenomic Interrogation of Arachnida Reveals Systemic Conflicts in Phylogenetic Signal
Molecular Biology and Evolution, 2014, 31, 2963-2984
3.1312Citations (PDF)
43Phylogeny, Taxonomic Revision, and Character Evolution of the GeneraChiasmocleisandSyncope(Anura, Microhylidae) in Amazonia, with Descriptions of Three New Species
Bulletin of the American Museum of Natural History, 2014, 386, 1-112
1.542Citations (PDF)
44Into the deep: A phylogenetic approach to the bivalve subclass Protobranchia
Molecular Phylogenetics and Evolution, 2013, 69, 188-204
2.294Citations (PDF)
45Revenant clades in historical biogeography: the geology of New Zealand predisposes endemic clades to root age shifts
Journal of Biogeography, 2013, 40, 1609-1618
2.145Citations (PDF)
46Phylogenetic relationships of a Patagonian frog radiation, the Alsodes + Eupsophus clade (Anura: Alsodidae), with comments on the supposed paraphyly of Eupsophus
Cladistics, 2013, 29, 113-131
4.972Citations (PDF)
47Elongation factor-1α, a putative single-copy nuclear gene, has divergent sets of paralogs in an arachnid
Molecular Phylogenetics and Evolution, 2013, 68, 471-481
2.212Citations (PDF)
48Systematics of spiny‐backed treefrogs (Hylidae:Osteocephalus): anAmazonian puzzle
Zoologica Scripta, 2013, 42, 351-380
1.079Citations (PDF)
49Direct Optimization, Sensitivity Analysis, and the Evolution of the Hymenopteran Superfamilies
American Museum Novitates, 2013, 3789, 1-20
0.56Citations (PDF)
50The tree alignment problem
BMC Bioinformatics, 2012, 13,
2.530Citations (PDF)
51Maximum Parsimony on Phylogenetic networks
Algorithms for Molecular Biology, 2012, 7,
0.8104Citations (PDF)
52Phylogenetic relationships among superfamilies of Hymenoptera
Cladistics, 2012, 28, 80-112
4.9175Citations (PDF)
53Trivial minimization of extra‐steps under dynamic homology
Cladistics, 2012, 28, 188-189
4.911Citations (PDF)
54Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service
Cladistics, 2012, 28, 483-488
4.93Citations (PDF)
55Indel information eliminates trivial sequence alignment in maximum likelihood phylogenetic analysis
Cladistics, 2012, 28, 514-528
4.911Citations (PDF)
56A phylogenetic analysis of Pleurodema (Anura: Leptodactylidae: Leiuperinae) based on mitochondrial and nuclear gene sequences, with comments on the evolution of anuran foam nests
Cladistics, 2012, 28, 460-482
4.967Citations (PDF)
57Evolution of the hymenopteran megaradiation
Molecular Phylogenetics and Evolution, 2011, 60, 73-88
2.2191Citations (PDF)
58The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases
Cladistics, 2011, 27, 61-66
4.920Citations (PDF)
59The phylogenetic relationships of the charismatic poster frogs, Phyllomedusinae (Anura, Hylidae)
Cladistics, 2010, 26, 227-261
4.9130Citations (PDF)
60POY version 4: phylogenetic analysis using dynamic homologies
Cladistics, 2010, 26, 72-85
4.9193Citations (PDF)
61Distinctions between optimal and expected support
Cladistics, 2010, 26, 657-663
4.99Citations (PDF)
62Mitochondrial Intergenic Spacer in Fairy Basslets (Serranidae: Anthiinae) and the Simultaneous Analysis of Nucleotide and Rearrangement Data
American Museum Novitates, 2009, 3652, 1-10
0.58Citations (PDF)
63Phylogenetic relationships within the Cimicomorpha (Hemiptera: Heteroptera): a total‐evidence analysis
Systematic Entomology, 2009, 34, 15-48
2.1183Citations (PDF)
64Assessing the root of bilaterian animals with scalable phylogenomic methods
Proceedings of the Royal Society B: Biological Sciences, 2009, 276, 4261-4270
1.6695Citations (PDF)
65IsThe Amphibian Tree of Lifereally fatally flawed?
Cladistics, 2008, 24, 385-395
4.923Citations (PDF)
66Application note: on extension gap in POY version 3
Cladistics, 2008, 24, 1070-1070
4.96Citations (PDF)
67Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera)
Cladistics, 2008, 24, 932-976
4.9156Citations (PDF)
68Broad phylogenomic sampling improves resolution of the animal tree of life
Nature, 2008, 452, 745-749
31.31,838Citations (PDF)
69Topology-Bayes versus Clade-Bayes in Phylogenetic Analysis
Molecular Biology and Evolution, 2008, 25, 447-453
3.123Citations (PDF)
70Genomic Analysis and Geographic Visualization of the Spread of Avian Influenza (H5N1)
Systematic Biology, 2007, 56, 321-329
3.266Citations (PDF)
71Linking of Digital Images to Phylogenetic Data Matrices Using a Morphological Ontology
Systematic Biology, 2007, 56, 283-294
3.287Citations (PDF)
72The evolutionary transition from subsocial to eusocial behaviour in Dictyoptera: Phylogenetic evidence for modification of the “shift-in-dependent-care” hypothesis with a new subsocial cockroach
Molecular Phylogenetics and Evolution, 2007, 43, 616-626
2.262Citations (PDF)
73Chromosomal character optimization
Molecular Phylogenetics and Evolution, 2007, 44, 1130-1140
2.26Citations (PDF)
74Phylogeny of the sea spiders (Arthropoda, Pycnogonida) based on direct optimization of six loci and morphology
Cladistics, 2007, 23, 255-293
4.9117Citations (PDF)
75The case for sensitivity: a response to Grant and Kluge
Cladistics, 2007, 23, 294-296
4.919Citations (PDF)
76Phylogeny of Branchiopoda (Crustacea) based on a combined analysis of morphological data and six molecular loci
Cladistics, 2007, 23, 301-336
4.9114Citations (PDF)
77PHYLOGENETIC SYSTEMATICS OF DART-POISON FROGS AND THEIR RELATIVES (AMPHIBIA: ATHESPHATANURA: DENDROBATIDAE)
Bulletin of the American Museum of Natural History, 2006, 299, 1-262
1.5472Citations (PDF)
78THE AMPHIBIAN TREE OF LIFE
Bulletin of the American Museum of Natural History, 2006, 297, 1-291
1.51,663Citations (PDF)
79Dynamic homology and the likelihood criterion
Cladistics, 2006, 22, 157-170
4.938Citations (PDF)
80Partition‐free congruence analysis: implications for sensitivity analysis
Cladistics, 2006, 22, 256-263
4.919Citations (PDF)
81Venom Evolution Widespread in Fishes: A Phylogenetic Road Map for the Bioprospecting of Piscine Venoms
Journal of Heredity, 2006, 97, 206-217
1.3225Citations (PDF)
82Poor taxon sampling, poor character sampling, and non-repeatable analyses of a contrived dataset do not provide a more credible estimate of insect phylogeny: a reply to Kjer
Cladistics, 2005, 21, 295-302
4.920Citations (PDF)
83Scorpion higher phylogeny and classification, taxonomic anarchy, and standards for peer review in online publishing
Cladistics, 2005, 21, 446-494
4.9190Citations (PDF)
84Parsimony overcomes statistical inconsistency with the addition of more data from the same gene
Cladistics, 2005, 21, 438-445
4.919Citations (PDF)
85Systematics of the group of African whip spiders (Chelicerata: Amblypygi): Evidence from behaviour, morphology and DNA
Organisms Diversity and Evolution, 2005, 5, 203-236
0.5160Citations (PDF)
86SYSTEMATIC REVIEW OF THE FROG FAMILY HYLIDAE, WITH SPECIAL REFERENCE TO HYLINAE: PHYLOGENETIC ANALYSIS AND TAXONOMIC REVISION
Bulletin of the American Museum of Natural History, 2005, 294, 1
1.5726Citations (PDF)
87Comparative and phylogenetic analysis of developmental sequences
Evolution & Development, 2004, 6, 50-57
1.699Citations (PDF)
88Polyphyly of the mail-cheeked fishes (Teleostei: Scorpaeniformes): evidence from mitochondrial and nuclear sequence data
Molecular Phylogenetics and Evolution, 2004, 32, 627-646
2.2130Citations (PDF)
89A molecular perspective on the phylogeny of the Hyla pulchella species group (Anura, Hylidae)
Molecular Phylogenetics and Evolution, 2004, 32, 938-950
2.285Citations (PDF)
90Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of insects
Organisms Diversity and Evolution, 2004, 4, 319-340
0.572Citations (PDF)
91Iterative pass optimization of sequence data
Cladistics, 2003, 19, 254-260
4.999Citations (PDF)
92Implied alignment: a synapomorphy-based multiple-sequence alignment method and its use in cladogram search
Cladistics, 2003, 19, 261-268
4.9158Citations (PDF)
93Search-based optimization
Cladistics, 2003, 19, 348-355
4.929Citations (PDF)
94Missing entry replacement data analysis: a replacement approach to dealing with missing data in paleontological and total evidence data sets
Journal of Vertebrate Paleontology, 2003, 23, 275-283
0.732Citations (PDF)
95Phylogeny of Henicopidae (Chilopoda: Lithobiomorpha): a combined analysis of morphology and five molecular loci
Systematic Entomology, 2002, 27, 31-64
2.1104Citations (PDF)
96Phylogeny and Systematic Position of Opiliones: A Combined Analysis of Chelicerate Relationships Using Morphological and Molecular Data1
Cladistics, 2002, 18, 5-70
4.9238Citations (PDF)
97Simultaneous analysis of the basal lineages of Hymenoptera (Insecta) using sensitivity analysis
Cladistics, 2002, 18, 455-484
4.9131Citations (PDF)
98On bivalve phylogeny: a high‐level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data
Invertebrate Biology, 2002, 121, 271-324
0.6262Citations (PDF)
99Some Unusual Small-Subunit Ribosomal RNA Sequences of Metazoans
American Museum Novitates, 2001, 3337, 1-16
0.560Citations (PDF)
100Homology and the Optimization of DNA Sequence Data
Cladistics, 2001, 17, S3-S11
4.996Citations (PDF)
101Efficiency of Parallel Direct Optimization
Cladistics, 2001, 17, S71-S82
4.918Citations (PDF)
102The Phylogeny of the Extant Hexapod Orders
Cladistics, 2001, 17, 113-169
4.9438Citations (PDF)
103Arthropod phylogeny based on eight molecular loci and morphology
Nature, 2001, 413, 157-161
31.3527Citations (PDF)
104Multiple Sequence Alignment in Phylogenetic Analysis
Molecular Phylogenetics and Evolution, 2000, 16, 317-330
2.2230Citations (PDF)
105Triploblastic Relationships with Emphasis on the Acoelomates and the Position of Gnathostomulida, Cycliophora, Plathelminthes, and Chaetognatha: A Combined Approach of 18S rDNA Sequences and Morphology
Systematic Biology, 2000, 49, 539-562
3.2398Citations (PDF)
106Transformationalism, Taxism, and Developmental Biology in Systematics
Systematic Biology, 2000, 49, 19-27
3.211Citations (PDF)
107Measuring Topological Congruence by Extending Character Techniques
Cladistics, 1999, 15, 131-135
4.935Citations (PDF)
108Fixed Character States and the Optimization of Molecular Sequence Data
Cladistics, 1999, 15, 379-385
4.992Citations (PDF)
109On Gaps
Molecular Phylogenetics and Evolution, 1999, 13, 132-143
2.2272Citations (PDF)
110The Position of Arthropods in the Animal Kingdom: Ecdysozoa, Islands, Trees, and the “Parsimony Ratchet”
Molecular Phylogenetics and Evolution, 1999, 13, 619-623
2.295Citations (PDF)
111The Phylogeny of the Extant Chelicerate Orders
Cladistics, 1998, 14, 173-192
4.9314Citations (PDF)
112The Strepsiptera Problem: Phylogeny of the Holometabolous Insect Orders Inferred from 18S and 28S Ribosomal DNA Sequences and Morphology
Systematic Biology, 1997, 46, 1-68
3.2729Citations (PDF)
113The Stresiptera Problem: Phylogeny of the Holometabolous Insect Orders Inferred from 18S and 28S Ribosomal DNA Sequences and Morphology
Systematic Biology, 1997, 46, 1
3.2547Citations (PDF)
114OPTIMIZATION ALIGNMENT: THE END OF MULTIPLE SEQUENCE ALIGNMENT IN PHYLOGENETICS?
Cladistics, 1996, 12, 1-9
4.9569Citations (PDF)
115Molecular Evolution and Phylogenetic Utility of the Polyubiquitin Locus in Mammals and Higher Vertebrates
Molecular Phylogenetics and Evolution, 1996, 6, 259-269
2.214Citations (PDF)
116Elision: A Method for Accommodating Multiple Molecular Sequence Alignments with Alignment-Ambiguous Sites
Molecular Phylogenetics and Evolution, 1995, 4, 1-9
2.2147Citations (PDF)
117Sequence Alignment, Parameter Sensitivity, and the Phylogenetic Analysis of Molecular Data
Systematic Biology, 1995, 44, 321
3.2176Citations (PDF)
118Sequence Alignment, Parameter Sensitivity, and the Phylogenetic Analysis of Molecular Data
Systematic Biology, 1995, 44, 321-331
3.2441Citations (PDF)
119Higher Level Relationships of the Arctoid Carnivora Based on Sequence Data and "Total Evidence"
Molecular Phylogenetics and Evolution, 1994, 3, 47-58
2.2123Citations (PDF)
120Insect homeotic transformation
Nature, 1994, 368, 696-696
31.376Citations (PDF)
121A NOVEL METHOD FOR ECONOMICAL DIAGNOSIS OF CLADOGRAMS UNDER SANKOFF OPTIMIZATION
Cladistics, 1994, 10, 207-213
4.99Citations (PDF)
122MALIGN: A Multiple Sequence Alignment Program
Journal of Heredity, 1994, 85, 417-418
1.3150Citations (PDF)
123Alignment-Ambiguous Nucleotide Sites and the Exclusion of Systematic Data
Molecular Phylogenetics and Evolution, 1993, 2, 152-157
2.2330Citations (PDF)
124ARTHROPOD PHYLOGENY: A COMBINED APPROACH
Cladistics, 1993, 9, 1-39
4.9315Citations (PDF)
125INDIVIDUAL ORGANISMS AS TERMINAL ENTITIES: LAYING THE SPECIES PROBLEM TO REST
Cladistics, 1992, 8, 67-72
4.985Citations (PDF)
126COMBINATORIAL WEIGHTS IN PHYLOGENETIC ANALYSIS: A STATISTICAL PARSIMONY PROCEDURE
Cladistics, 1990, 6, 269-275
4.9103Citations (PDF)
127NUCLEIC ACID SEQUENCE PHYLOGENY AND RANDOM OUTGROUPS
Cladistics, 1990, 6, 363-367
4.9247Citations (PDF)
128Paired sequence difference in ribosomal RNAs: evolutionary and phylogenetic implications.
Molecular Biology and Evolution, 1988, ,
3.1202Citations (PDF)
129Preliminary phylogenetic analysis of the Andean clade and the placement of new Colombian blueberries (Ericaceae, Vaccinieae)
PhytoKeys, 0, 49, 13-31
0.417Citations (PDF)
130Title is missing!
0
1Citations (PDF)
131The limits of phylogenetic analysis: identifying analytical hallucinations
Cladistics, 0, 41, 513-522
4.90Citations (PDF)
132Traditional characters and Procrustes‐aligned landmark data: a sensitivity analysis in morphological data type weighting for phylogenetic analyses
Cladistics, 0, ,
4.90Citations (PDF)