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48 peer-reviewed articles • 13,089 peer-reviewed citations • Sorted by year • Download PDF (PDF by citations)
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1SILVAN: Estimating Betweenness Centralities with Progressive Sampling and Non-uniform Rademacher Bounds
ACM Transactions on Knowledge Discovery From Data, 2024, 18, 1-55
2.813Citations (PDF)
2ALLSTAR: inference of reliAble causaL ruLes between Somatic muTAtions and canceR phenotypes.
Bioinformatics, 2024
3.20Citations (PDF)
3Efficient Discovery of Significant Patterns with Few-Shot Resampling
Proceedings of the VLDB Endowment, 2024, 17, 2668-2680
1.61Citations (PDF)
4Bounding the family-wise error rate in local causal discovery using Rademacher averages
Data Mining and Knowledge Discovery, 2024, 38, 1-27
2.61Citations (PDF)
5caSPiTa: mining statistically significant paths in time series data from an unknown network
Knowledge and Information Systems, 2023, 65, 2347-2374
1.91Citations (PDF)
6The Impact of Global Structural Information in Graph Neural Networks Applications
Data, 2022, 7, 10
1.66Citations (PDF)
7MCRapper: Monte-Carlo Rademacher Averages for Poset Families and Approximate Pattern Mining
ACM Transactions on Knowledge Discovery From Data, 2022, 16, 1-29
2.88Citations (PDF)
8SPRISS: approximating frequent k-mers by sampling reads, and applications.
Bioinformatics, 2022, 38, 3343-3350
3.23Citations (PDF)
9Technical perspective: Evaluating sampled metrics is challenging
Communications of the ACM, 2022, 65, 74-74
1.50Citations (PDF)
10gRosSo: mining statistically robust patterns from a sequence of datasets
Knowledge and Information Systems, 2022, 64, 2329-2359
1.91Citations (PDF)
11Comparison of microbiome samples: methods and computational challenges
Briefings in Bioinformatics, 2021, 22, 88-95
4.126Citations (PDF)
12Attention-Based Deep Learning Framework for Human Activity Recognition With User Adaptation
IEEE Sensors Journal, 2021, 21, 13474-13483
3.070Citations (PDF)
13Fast Approximation of Frequent k-Mers and Applications to Metagenomics
Journal of Computational Biology, 2020, 27, 534-549
0.810Citations (PDF)
14Identifying Drug Sensitivity Subnetworks with NETPHIX
IScience, 2020, 23, 101619
2.56Citations (PDF)
15Efficient mining of the most significant patterns with permutation testing
Data Mining and Knowledge Discovery, 2020, 34, 1201-1234
2.617Citations (PDF)
16Mining Sequential Patterns with VC-Dimension and Rademacher Complexity
Algorithms, 2020, 13, 123
1.512Citations (PDF)
17MiSoSouP: Mining Interesting Subgroups with Sampling and Pseudodimension
ACM Transactions on Knowledge Discovery From Data, 2020, 14, 1-31
2.85Citations (PDF)
18Enriched power of disease-concordant twin-case-only design in detecting interactions in genome-wide association studies
European Journal of Human Genetics, 2019, 27, 631-636
2.15Citations (PDF)
19People also looked at
Frontiers in Genetics, 2019, 10, 437012
1.68Citations (PDF)
20Efficient algorithms to discover alterations with complementary functional association in cancer
PLoS Computational Biology, 2019, 15, e1006802
2.013Citations (PDF)
21Differentially mutated subnetworks discovery
Algorithms for Molecular Biology, 2019, 14, 1-11
0.97Citations (PDF)
22Efficient detection of differentially methylated regions using DiMmeR.
Bioinformatics, 2017, 33, 549-551
3.29Citations (PDF)
23Disease-Concordant Twins Empower Genetic Association Studies
Annals of Human Genetics, 2017, 81, 20-26
1.051Citations (PDF)
24De novo pathway-based biomarker identification
Nucleic Acids Research, 2017, 45, e151
11.251Citations (PDF)
25HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology
Genome Research, 2017, 27, 1573-1588
3.283Citations (PDF)
26Clustering uncertain graphs
Proceedings of the VLDB Endowment, 2017, 11, 472-484
1.638Citations (PDF)
27People also looked at
Frontiers in Genetics, 2017, 8, 259369
1.631Citations (PDF)
28Differentially Methylated Genomic Regions in Birth-Weight Discordant Twin Pairs
Annals of Human Genetics, 2016, 80, 81-87
1.023Citations (PDF)
29Jllumina - A comprehensive Java-based API for statistical Illumina Infinium HumanMethylation450 and Infinium MethylationEPIC BeadChip data processing
Journal of Integrative Bioinformatics, 2016, 13, 24-32
0.82Citations (PDF)
30On the Sample Complexity of Cancer Pathways Identification
Journal of Computational Biology, 2016, 23, 30-41
0.86Citations (PDF)
31CoMEt: a statistical approach to identify combinations of mutually exclusive alterations in cancer
Genome Biology, 2015, 16, 1-20
4.8205Citations (PDF)
32Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation Data
Journal of Computational Biology, 2015, 22, 510-27
0.833Citations (PDF)
33Accurate Computation of Survival Statistics in Genome-Wide Studies
PLoS Computational Biology, 2015, 11, e1004071
2.027Citations (PDF)
34Integrated Genomic Characterization of Papillary Thyroid Carcinoma
Cell, 2014, 159, 676-690
23.82,948Citations (PDF)
35Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine
Genome Medicine, 2014, 6, 1-17
5.9218Citations (PDF)
36Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes
Nature Genetics, 2014, 47, 106-114
14.2970Citations (PDF)
37Mutational landscape and significance across 12 major cancer types
Nature, 2013, 502, 333-339
31.84,388Citations (PDF)
38Ballast: A Ball-based Algorithm for Structural Motifs
Journal of Computational Biology, 2013, 20, 137-51
0.85Citations (PDF)
39Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia
New England Journal of Medicine, 2013, 368, 2059-74
24.44,921Citations (PDF)
40An Efficient Rigorous Approach for Identifying Statistically Significant Frequent Itemsets
Journal of the ACM, 2012, 59, 1-22
1.127Citations (PDF)
41The mutational landscape of lethal castration-resistant prostate cancer
Nature, 2012, 487, 239-243
31.82,449Citations (PDF)
42Finding driver pathways in cancer: models and algorithms
Algorithms for Molecular Biology, 2012, 7, 1-10
0.919Citations (PDF)
43De novo discovery of mutated driver pathways in cancer
Genome Research, 2012, 22, 375-385
3.2428Citations (PDF)
44Algorithms and Genome Sequencing: Identifying Driver Pathways in Cancer
Computer, 2012, 45, 39-46
0.411Citations (PDF)
45Algorithms for Detecting Significantly Mutated Pathways in Cancer
Journal of Computational Biology, 2011, 18, 507-22
0.8454Citations (PDF)
46MADMX: A Strategy for Maximal Dense Motif Extraction
Journal of Computational Biology, 2011, 18, 535-45
0.816Citations (PDF)
47Mining top-K frequent itemsets through progressive sampling
Data Mining and Knowledge Discovery, 2010, 21, 310-326
2.637Citations (PDF)
48General-purpose topology-aware embedding of tumor phylogenetic trees with graph neural networks
Bioinformatics Advances, 0, 6, vbag016
0.90Citations (PDF)