| 1 | The Drosophila RNA binding protein Hrp48 binds a specific RNA sequence of the msl-2 mRNA 3’ UTR to regulate translation | 2.1 | 5 | Citations (PDF) |
| 2 | Computer Folding of Parallel DNA G‐Quadruplex: Hitchhiker's Guide to the Conformational Space | 4.8 | 4 | Citations (PDF) |
| 3 | Refinement of the Sugar Puckering Torsion Potential in the AMBER DNA Force Field | 5.1 | 19 | Citations (PDF) |
| 4 | How Binding Site Flexibility Promotes RNA Scanning by TbRGG2 RRM: A Molecular Dynamics Simulation Study | 4.5 | 1 | Citations (PDF) |
| 5 | Can We Ever Develop an Ideal RNA Force Field? Lessons Learned from Simulations of the UUCG RNA Tetraloop and Other Systems | 5.1 | 23 | Citations (PDF) |
| 6 | Transcriptome-scale analysis uncovers conserved residues in the hydrophobic core of the bacterial RNA chaperone Hfq required for small regulatory RNA stability | 15.5 | 3 | Citations (PDF) |
| 7 | The tautomer‐specific excited state dynamics of 2,6‐diaminopurine using resonance‐enhanced multiphoton ionization and quantum chemical calculations | 2.8 | 1 | Citations (PDF) |
| 8 | DNA Quadruplex Structure with a Unique Cation Dependency | 14.4 | 10 | Citations (PDF) |
| 9 | DNA Quadruplex Structure with a Unique Cation Dependency | 1.4 | 0 | Citations (PDF) |
| 10 | Photoinduced charge separation and DNA self-repair depend on sequence directionality and stacking pattern | 7.1 | 15 | Citations (PDF) |
| 11 | Molecular dynamics simulations reveal the parallel stranded d(GGGA)3GGG DNA quadruplex folds via multiple paths from a coil-like ensemble | 8.1 | 12 | Citations (PDF) |
| 12 | The tautomer‐specific excited state dynamics of 2,6‐diaminopurine using resonance‐enhanced multiphoton ionization and quantum chemical calculations | 2.8 | 0 | Citations (PDF) |
| 13 | Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations | 4.5 | 4 | Citations (PDF) |
| 14 | Structure of an internal loop motif with three consecutive U•U mismatches from stem–loop 1 in the 3′-UTR of the SARS-CoV-2 genomic RNA | 15.5 | 12 | Citations (PDF) |
| 15 | Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes | 5.1 | 22 | Citations (PDF) |
| 16 | Phosphoric acid salts of amino acids as a source of oligopeptides on the early Earth | 5.5 | 6 | Citations (PDF) |
| 17 | N-terminal domain of polypyrimidine-tract binding protein is a dynamic folding platform for adaptive RNA recognition | 15.5 | 2 | Citations (PDF) |
| 18 | Molecular Simulations to Investigate the Impact of N6-Methylation in RNA Recognition: Improving Accuracy and Precision of Binding Free Energy Prediction | 2.7 | 2 | Citations (PDF) |
| 19 | Structural and dynamic effects of pseudouridine modifications on noncanonical interactions in RNA | 3.8 | 17 | Citations (PDF) |
| 20 | Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes | 4.5 | 24 | Citations (PDF) |
| 21 | Atomistic Picture of Opening–Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations | 4.5 | 11 | Citations (PDF) |
| 22 | Influence of Silicate Rock Glass Compositions on the Efficacy of Prebiotic RNA Polymerization Reactions: The Case of 3’,5’ Cyclic Guanosine Monophosphate | 2.7 | 0 | Citations (PDF) |
| 23 | Assessing the Current State of Amber Force Field Modifications for DNA─2023 Edition | 5.1 | 56 | Citations (PDF) |
| 24 | Complexity of Guanine Quadruplex Unfolding Pathways Revealed by Atomistic Pulling Simulations | 4.5 | 8 | Citations (PDF) |
| 25 | The Reactivity-Enhancing Role of Water Clusters in Ammonia Aqueous Solutions | 4.2 | 28 | Citations (PDF) |
| 26 | Prebiotic Synthesis of 3’,5’‐Cyclic Adenosine and Guanosine Monophosphates through Carbodiimide‐Assisted Cyclization | 2.6 | 2 | Citations (PDF) |
| 27 | Topology of DNA G-Quadruplexes Can Be Harnessed in Holliday Junction-Based DNA Suprastructures to Control and Optimize Their Biocatalytic Properties | 12.4 | 7 | Citations (PDF) |
| 28 | Crystallization as a selection force at the polymerization of nucleotides in a prebiotic context | 3.6 | 2 | Citations (PDF) |
| 29 | Simple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA Simulations | 5.1 | 23 | Citations (PDF) |
| 30 | Exploring Sequence Space to Design Controllable G-Quadruplex Topology Switches | 8.6 | 18 | Citations (PDF) |
| 31 | Early steps of oxidative damage in DNA quadruplexes are position-dependent: Quantum mechanical and molecular dynamics analysis of human telomeric sequence containing ionized guanine | 8.1 | 4 | Citations (PDF) |
| 32 | RNA kink-turns are highly anisotropic with respect to lateral displacement of the flanking stems | 2.2 | 4 | Citations (PDF) |
| 33 | Photoinduced water–chromophore electron transfer causes formation of guanosine photodamage | 2.7 | 7 | Citations (PDF) |
| 34 | Hydrolysis of Al3+ in Aqueous Solutions: Experiments and Ab Initio Simulations | 2.1 | 18 | Citations (PDF) |
| 35 | Binding of Arsenic by Common Functional Groups: An Experimental and Quantum-Mechanical Study | 2.1 | 20 | Citations (PDF) |
| 36 | Toward Convergence in Folding Simulations of RNA Tetraloops: Comparison of Enhanced Sampling Techniques and Effects of Force Field Modifications | 5.1 | 56 | Citations (PDF) |
| 37 | Formamide-Based Post-impact Thermal Prebiotic Synthesis in Simulated Craters: Intermediates, Products and Mechanism | 2.6 | 6 | Citations (PDF) |
| 38 | The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly | 13.7 | 44 | Citations (PDF) |
| 39 | Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA Force Field | 5.1 | 44 | Citations (PDF) |
| 40 | Electrofreezing of Liquid Ammonia | 4.2 | 19 | Citations (PDF) |
| 41 | Computer Aided Development of Nucleic Acid Applications in Nanotechnologies | 11.5 | 21 | Citations (PDF) |
| 42 | Conformational Heterogeneity of RNA Stem-Loop Hairpins Bound to FUS-RNA Recognition Motif with Disordered RGG Tail Revealed by Unbiased Molecular Dynamics Simulations | 2.7 | 14 | Citations (PDF) |
| 43 | Spontaneous binding of single-stranded RNAs to RRM proteins visualized by unbiased atomistic simulations with a rescaled RNA force field | 15.5 | 22 | Citations (PDF) |
| 44 | Multiscale Modeling of Phosphate···π Contacts in RNA U-Turns Exposes Differences between Quantum-Chemical and AMBER Force Field Descriptions | 4.5 | 1 | Citations (PDF) |
| 45 | Sustainability and Chaos in the Abiotic Polymerization of 3′,5′ Cyclic Guanosine Monophosphate: The Role of Aggregation | 2.7 | 6 | Citations (PDF) |
| 46 | Residues flanking the ARKme3T/S motif allow binding of diverse targets to the HP1 chromodomain: Insights from molecular dynamics simulations | 2.0 | 3 | Citations (PDF) |
| 47 | Phosphorothioate Substitutions in RNA Structure Studied by Molecular Dynamics Simulations, QM/MM Calculations, and NMR Experiments | 2.7 | 21 | Citations (PDF) |
| 48 | Insight into formation propensity of pseudocircular DNA G-hairpins | 15.5 | 10 | Citations (PDF) |
| 49 | Insights into G-Quadruplex–Hemin Dynamics Using Atomistic Simulations: Implications for Reactivity and Folding | 5.1 | 40 | Citations (PDF) |
| 50 | Intrinsically Polar Piezoelectric Self‐Assembled Oligopeptide Monolayers | 24.5 | 24 | Citations (PDF) |
| 51 | Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study | 4.2 | 4 | Citations (PDF) |
| 52 | Atomistic simulations of the free-energy landscapes of interstellar chemical reactions: the case of methyl isocyanate | 4.7 | 9 | Citations (PDF) |
| 53 | 2,6-diaminopurine promotes repair of DNA lesions under prebiotic conditions | 13.7 | 34 | Citations (PDF) |
| 54 | Thermal Decomposition of Cocaine and Methamphetamine Investigated by Infrared Spectroscopy and Quantum Chemical Simulations | 4.3 | 5 | Citations (PDF) |
| 55 | W-RESP: Well-Restrained Electrostatic Potential-Derived Charges. Revisiting the Charge Derivation Model | 5.1 | 27 | Citations (PDF) |
| 56 | Electric Field and Temperature Effects on the Ab Initio Spectroscopy of Liquid Methanol | 2.1 | 4 | Citations (PDF) |
| 57 | Recognition of N6-Methyladenosine by the YTHDC1 YTH Domain Studied by Molecular Dynamics and NMR Spectroscopy: The Role of Hydration | 2.7 | 21 | Citations (PDF) |
| 58 | G‐Quadruplex Formation by DNA Sequences Deficient in Guanines: Two Tetrad Parallel Quadruplexes Do Not Fold Intramolecularly | 3.4 | 22 | Citations (PDF) |
| 59 | Ribose Alters the Photochemical Properties of the Nucleobase in Thionated Nucleosides | 4.2 | 11 | Citations (PDF) |
| 60 | Nonenzymatic, Template‐Free Polymerization of 3’,5’ Cyclic Guanosine Monophosphate on Mineral Surfaces | 2.7 | 8 | Citations (PDF) |
| 61 | Ab Initio Molecular Dynamics Studies of the Electric-Field-Induced Catalytic Effects on Liquids | 2.5 | 31 | Citations (PDF) |
| 62 | Questions and Answers Related to the Prebiotic Production of Oligonucleotide Sequences from 3′,5′ Cyclic Nucleotide Precursors | 2.6 | 6 | Citations (PDF) |
| 63 | The beginning and the end: flanking nucleotides induce a parallel G-quadruplex topology | 15.5 | 48 | Citations (PDF) |
| 64 | Z-DNA as a Touchstone for Additive Empirical Force Fields and a Refinement of the Alpha/Gamma DNA Torsions for AMBER | 5.1 | 78 | Citations (PDF) |
| 65 | MD simulations reveal the basis for dynamic assembly of Hfq–RNA complexes | 2.2 | 13 | Citations (PDF) |
| 66 | Structure of SRSF1 RRM1 bound to RNA reveals an unexpected bimodal mode of interaction and explains its involvement in SMN1 exon7 splicing | 13.7 | 55 | Citations (PDF) |
| 67 | Understanding the behaviour of carnosine in aqueous solution: an experimental and quantum-based computational investigation on acid–base properties and complexation mechanisms with Ca2+and Mg2+ | 2.4 | 9 | Citations (PDF) |
| 68 | Ab initio molecular dynamics simulations and experimental speciation study of levofloxacin under different pH conditions | 2.7 | 8 | Citations (PDF) |
| 69 | Molecular dissociation and proton transfer in aqueous methane solution under an electric field | 2.7 | 5 | Citations (PDF) |
| 70 | Short-Range Imbalances in the AMBER Lennard-Jones Potential for (Deoxy)Ribose···Nucleobase Lone-Pair···π Contacts in Nucleic Acids | 4.5 | 5 | Citations (PDF) |
| 71 | Acid‐Catalyzed RNA‐Oligomerization from 3’,5’‐cGMP | 3.4 | 17 | Citations (PDF) |
| 72 | Quantum Chemistry Common Driver and Databases (QCDB) and Quantum Chemistry Engine (QCEngine): Automation and interoperability among computational chemistry programs | 2.8 | 35 | Citations (PDF) |
| 73 | Meteorite‐Assisted Phosphorylation of Adenosine Under Proton Irradiation Conditions | 2.7 | 14 | Citations (PDF) |
| 74 | UV-induced hydrogen transfer in DNA base pairs promoted by dark nπ* states | 3.4 | 10 | Citations (PDF) |
| 75 | Short but Weak: The Z‐DNA Lone‐Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii | 1.4 | 1 | Citations (PDF) |
| 76 | UUCG RNA Tetraloop as a Formidable Force-Field Challenge for MD Simulations | 5.1 | 50 | Citations (PDF) |
| 77 | Ariel – a window to the origin of life on early earth? | 1.9 | 2 | Citations (PDF) |
| 78 | One-Pot Hydrogen Cyanide-Based Prebiotic Synthesis of Canonical Nucleobases and Glycine Initiated by High-Velocity Impacts on Early Earth | 2.4 | 39 | Citations (PDF) |
| 79 | High‐Energy Proton‐Beam‐Induced Polymerization/Oxygenation of Hydroxynaphthalenes on Meteorites and Nitrogen Transfer from Urea: Modeling Insoluble Organic Matter? | 3.4 | 11 | Citations (PDF) |
| 80 | Ab Initio Molecular Dynamics Study of Methanol-Water Mixtures under External Electric Fields | 4.2 | 20 | Citations (PDF) |
| 81 | Electric-Field-Induced Effects on the Dipole Moment and Vibrational Modes of the Centrosymmetric Indigo Molecule | 2.5 | 25 | Citations (PDF) |
| 82 | Fine-Tuning of the AMBER RNA Force Field with a New Term Adjusting Interactions of Terminal Nucleotides | 5.1 | 53 | Citations (PDF) |
| 83 | Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA | 2.0 | 25 | Citations (PDF) |
| 84 | Short but Weak: The Z‐DNA Lone‐Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii | 14.4 | 28 | Citations (PDF) |
| 85 | Surprisingly broad applicability of the cc-pVnZ-F12 basis set for ground and excited states | 2.8 | 16 | Citations (PDF) |
| 86 | Compensatory Mechanisms in Temperature Dependence of DNA Double Helical Structure: Bending and Elongation | 5.1 | 22 | Citations (PDF) |
| 87 | Removal of As(III) from Biological Fluids: Mono- versus Dithiolic Ligands | 3.7 | 16 | Citations (PDF) |
| 88 | Stability of Two-Quartet G-Quadruplexes and Their Dimers in Atomistic Simulations | 5.1 | 23 | Citations (PDF) |
| 89 | Arsenic–nucleotides interactions: an experimental and computational investigation | 3.0 | 13 | Citations (PDF) |
| 90 | Formic Acid, a Ubiquitous but Overlooked Component of the Early Earth Atmosphere | 3.4 | 21 | Citations (PDF) |
| 91 | Stereocontrolled Synthesis of (−)-Bactobolin A | 15.0 | 18 | Citations (PDF) |
| 92 | Enhanced conductivity of water at the electrified air–water interface: a DFT-MD characterization | 2.7 | 18 | Citations (PDF) |
| 93 | Prebiotic synthesis at impact craters: the role of Fe-clays and iron meteorites | 3.4 | 20 | Citations (PDF) |
| 94 | Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes | 15.5 | 56 | Citations (PDF) |
| 95 | <i>Ab initio</i> spectroscopy of water under electric fields | 2.7 | 72 | Citations (PDF) |
| 96 | Interaction between As(III) and Simple Thioacids in Water: An Experimental and ab Initio Molecular Dynamics Investigation | 2.7 | 11 | Citations (PDF) |
| 97 | Role of Fine Structural Dynamics in Recognition of Histone H3 by HP1γ(CSD) Dimer and Ability of Force Fields to Describe Their Interaction Network | 5.1 | 2 | Citations (PDF) |
| 98 | RuvC uses dynamic probing of the Holliday junction to achieve sequence specificity and efficient resolution | 13.7 | 29 | Citations (PDF) |
| 99 | Local-to-global signal transduction at the core of a Mn2+ sensing riboswitch | 13.7 | 42 | Citations (PDF) |
| 100 | DNA Damage Changes Distribution Pattern and Levels of HP1 Protein Isoforms in the Nucleolus and Increases Phosphorylation of HP1β-Ser88 | 4.7 | 10 | Citations (PDF) |
| 101 | Revisiting the Potential Energy Surface of the Stacked Cytosine Dimer: FNO-CCSD(T) Interaction Energies, SAPT Decompositions, and Benchmarking | 2.5 | 15 | Citations (PDF) |
| 102 | Prebiotic synthesis initiated in formaldehyde by laser plasma simulating high-velocity impacts | 5.9 | 39 | Citations (PDF) |
| 103 | Photodynamics of alternative DNA base isoguanine | 2.7 | 27 | Citations (PDF) |
| 104 | Structural and Energetic Compatibility: The Driving Principles of Molecular Evolution | 2.4 | 4 | Citations (PDF) |
| 105 | Fitting Corrections to an RNA Force Field Using Experimental Data | 5.1 | 73 | Citations (PDF) |
| 106 | Improving the Performance of the Amber RNA Force Field by Tuning the Hydrogen-Bonding Interactions | 5.1 | 138 | Citations (PDF) |
| 107 | Catalyst-Free Hydrogen Synthesis from Liquid Ethanol: An ab Initio Molecular Dynamics Study | 3.1 | 32 | Citations (PDF) |
| 108 | Interactions between cyclic nucleotides and common cations: an<i>ab initio</i>molecular dynamics study | 2.7 | 18 | Citations (PDF) |
| 109 | Stabilization of Short Oligonucleotides in the Prebiotic Mix: The Potential Role of Amino Alcohols | 2.7 | 2 | Citations (PDF) |
| 110 | Molecular basis for AU-rich element recognition and dimerization by the HuR C-terminal RRM | 7.5 | 102 | Citations (PDF) |
| 111 | Investigations of Stacked DNA Base-Pair Steps: Highly Accurate Stacking Interaction Energies, Energy Decomposition, and Many-Body Stacking Effects | 5.1 | 66 | Citations (PDF) |
| 112 | Sequential electron transfer governs the UV-induced self-repair of DNA photolesions | 7.1 | 30 | Citations (PDF) |
| 113 | Mobilities of iodide anions in aqueous solutions for applications in natural dye-sensitized solar cells | 2.7 | 25 | Citations (PDF) |
| 114 | Synthesis of (d)-erythrose from glycolaldehyde aqueous solutions under electric field | 3.4 | 58 | Citations (PDF) |
| 115 | RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview | 52.6 | 582 | Citations (PDF) |
| 116 | A- to B-DNA Transition in AMBER Force Fields and Its Coupling to Sugar Pucker | 5.1 | 37 | Citations (PDF) |
| 117 | Mechanism of polypurine tract primer generation by HIV-1 reverse transcriptase | 2.2 | 26 | Citations (PDF) |
| 118 | Molecular basis for the increased affinity of an RNA recognition motif with re-engineered specificity: A molecular dynamics and enhanced sampling simulations study | 3.1 | 14 | Citations (PDF) |
| 119 | Photostability of oxazoline RNA-precursors in UV-rich prebiotic environments | 3.4 | 15 | Citations (PDF) |
| 120 | Selective prebiotic conversion of pyrimidine and purine anhydronucleosides into Watson-Crick base-pairing arabino-furanosyl nucleosides in water | 13.7 | 42 | Citations (PDF) |
| 121 | HNCO-based synthesis of formamide in planetary atmospheres | 5.9 | 42 | Citations (PDF) |
| 122 | How Proximal Nucleobases Regulate the Catalytic Activity of G-Quadruplex/Hemin DNAzymes | 12.4 | 78 | Citations (PDF) |
| 123 | Dust Motions in Magnetized Turbulence: Source of Chemical Complexity | 11.4 | 23 | Citations (PDF) |
| 124 | Structural Dynamics of Lateral and Diagonal Loops of Human Telomeric G-Quadruplexes in Extended MD Simulations | 5.1 | 30 | Citations (PDF) |
| 125 | QM/MM Calculations on Protein–RNA Complexes: Understanding Limitations of Classical MD Simulations and Search for Reliable Cost-Effective QM Methods | 5.1 | 40 | Citations (PDF) |
| 126 | Stability of hydrolytic arsenic species in aqueous solutions: As<sup>3+</sup><i>vs.</i> As<sup>5+</sup> | 2.7 | 44 | Citations (PDF) |
| 127 | Structural dynamics of propeller loop: towards folding of RNA G-quadruplex | 15.5 | 34 | Citations (PDF) |
| 128 | Electron-driven proton transfer enables nonradiative photodeactivation in microhydrated 2-aminoimidazole | 3.0 | 3 | Citations (PDF) |
| 129 | Solvation effects alter the photochemistry of 2-thiocytosine | 2.2 | 16 | Citations (PDF) |
| 130 | Chemomimesis and Molecular Darwinism in Action: From Abiotic Generation of Nucleobases to Nucleosides and RNA | 2.6 | 18 | Citations (PDF) |
| 131 | An intricate balance of hydrogen bonding, ion atmosphere and dynamics facilitates a seamless uracil to cytosine substitution in the U-turn of the neomycin-sensing riboswitch | 15.5 | 41 | Citations (PDF) |
| 132 | Photorelaxation of imidazole and adenine via electron-driven proton transfer along H2O wires | 3.0 | 15 | Citations (PDF) |
| 133 | Influence of BII Backbone Substates on DNA Twist: A Unified View and Comparison of Simulation and Experiment for All 136 Distinct Tetranucleotide Sequences | 4.5 | 36 | Citations (PDF) |
| 134 | Structure of a Stable G-Hairpin | 15.0 | 57 | Citations (PDF) |
| 135 | Coordination between the polymerase and RNase H activity of HIV-1 reverse transcriptase | 15.5 | 29 | Citations (PDF) |
| 136 | Selectivity of major isoquinoline alkaloids from Chelidonium majus towards telomeric G-quadruplex: A study using a transition-FRET (t-FRET) assay | 2.0 | 45 | Citations (PDF) |
| 137 | Nonenzymatic Oligomerization of 3′,5′‐Cyclic CMP Induced by Proton and UV Irradiation Hints at a Nonfastidious Origin of RNA | 2.6 | 16 | Citations (PDF) |
| 138 | Exploring the Dynamics of Propeller Loops in Human Telomeric DNA Quadruplexes Using Atomistic Simulations | 5.1 | 45 | Citations (PDF) |
| 139 | rRNA C-Loops: Mechanical Properties of a Recurrent Structural Motif | 5.1 | 12 | Citations (PDF) |
| 140 | Water–chromophore electron transfer determines the photochemistry of cytosine and cytidine | 2.7 | 29 | Citations (PDF) |
| 141 | Channeling through Two Stacked Guanine Quartets of One and Two Alkali Cations in the Li+, Na+, K+, and Rb+ Series. Assessment of the Accuracy of the SIBFA Anisotropic Polarizable Molecular Mechanics Potential | 2.7 | 21 | Citations (PDF) |
| 142 | Noncanonical α/γ Backbone Conformations in RNA and the Accuracy of Their Description by the AMBER Force Field | 2.7 | 30 | Citations (PDF) |
| 143 | Stability of 2′,3′ and 3′,5′ cyclic nucleotides in formamide and in water: a theoretical insight into the factors controlling the accumulation of nucleic acid building blocks in a prebiotic pool | 2.7 | 19 | Citations (PDF) |
| 144 | Folding of guanine quadruplex molecules–funnel-like mechanism or kinetic partitioning? An overview from MD simulation studies | 2.0 | 109 | Citations (PDF) |
| 145 | MD and QM/MM Study of the Quaternary HutP Homohexamer Complex with mRNA, l-Histidine Ligand, and Mg2+ | 5.1 | 22 | Citations (PDF) |
| 146 | Aromatic side-chain conformational switch on the surface of the RNA Recognition Motif enables RNA discrimination | 13.7 | 31 | Citations (PDF) |
| 147 | Ionic diffusion and proton transfer in aqueous solutions of alkali metal salts | 2.7 | 46 | Citations (PDF) |
| 148 | Structural study of the Fox-1 RRM protein hydration reveals a role for key water molecules in RRM-RNA recognition | 15.5 | 30 | Citations (PDF) |
| 149 | Novel electrochemical route to cleaner fuel dimethyl ether | 3.4 | 28 | Citations (PDF) |
| 150 | Multifunctional energy landscape for a DNA G-quadruplex: An evolved molecular switch | 2.8 | 35 | Citations (PDF) |
| 151 | Mapping the Chemical Space of the RNA Cleavage and Its Implications for Ribozyme Catalysis | 2.7 | 5 | Citations (PDF) |
| 152 | Proton irradiation: a key to the challenge of N-glycosidic bond formation in a prebiotic context | 3.4 | 44 | Citations (PDF) |
| 153 | Effect of Monovalent Ion Parameters on Molecular Dynamics Simulations of G-Quadruplexes | 5.1 | 58 | Citations (PDF) |
| 154 | How to understand atomistic molecular dynamics simulations of RNA and protein–RNA complexes? | 5.3 | 64 | Citations (PDF) |
| 155 | New evolutionary insights into the non‐enzymatic origin of RNA oligomers | 5.3 | 14 | Citations (PDF) |
| 156 | Molecular Dynamics Simulation Study of Parallel Telomeric DNA Quadruplexes at Different Ionic Strengths: Evaluation of Water and Ion Models | 2.7 | 32 | Citations (PDF) |
| 157 | Emergence of the First Catalytic Oligonucleotides in a Formamide‐Based Origin Scenario | 3.4 | 72 | Citations (PDF) |
| 158 | Conformations of Human Telomeric G-Quadruplex Studied Using a Nucleotide-Independent Nitroxide Label | 2.4 | 23 | Citations (PDF) |
| 159 | Free Energy Landscape of GAGA and UUCG RNA Tetraloops | 4.2 | 90 | Citations (PDF) |
| 160 | Comparative Assessment of Different RNA Tetranucleotides from the DFT-D3 and Force Field Perspective | 2.7 | 17 | Citations (PDF) |
| 161 | Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies | 5.1 | 157 | Citations (PDF) |
| 162 | Coarse-Grained Simulations Complemented by Atomistic Molecular Dynamics Provide New Insights into Folding and Unfolding of Human Telomeric G-Quadruplexes | 5.1 | 54 | Citations (PDF) |
| 163 | Ultrafast excited-state dynamics of isocytosine | 2.7 | 41 | Citations (PDF) |
| 164 | Synergy between NMR measurements and MD simulations of protein/RNA complexes: application to the RRMs, the most common RNA recognition motifs | 15.5 | 53 | Citations (PDF) |
| 165 | Assessing the Current State of Amber Force Field Modifications for DNA | 5.1 | 513 | Citations (PDF) |
| 166 | On the Use of Molecular Dynamics Simulations for Probing Allostery through DNA | 2.2 | 17 | Citations (PDF) |
| 167 | Derivation of Reliable Geometries in QM Calculations of DNA Structures: Explicit Solvent QM/MM and Restrained Implicit Solvent QM Optimizations of G-Quadruplexes | 5.1 | 23 | Citations (PDF) |
| 168 | Can We Execute Reliable MM-PBSA Free Energy Computations of Relative Stabilities of Different Guanine Quadruplex Folds? | 2.7 | 33 | Citations (PDF) |
| 169 | A prebiotically plausible synthesis of pyrimidine β-ribonucleosides and their phosphate derivatives involving photoanomerization | 18.8 | 133 | Citations (PDF) |
| 170 | TiO2-catalyzed synthesis of sugars from formaldehyde in extraterrestrial impacts on the early Earth | 3.4 | 35 | Citations (PDF) |
| 171 | Non-Enzymatic Oligomerization of 3’, 5’ Cyclic AMP | 2.3 | 24 | Citations (PDF) |
| 172 | Tetraloop‐like Geometries Could Form the Basis of the Catalytic Activity of the Most Ancient Ribooligonucleotides | 3.4 | 9 | Citations (PDF) |
| 173 | Excited-state hydrogen atom abstraction initiates the photochemistry of β-2′-deoxycytidine | 7.1 | 19 | Citations (PDF) |
| 174 | Microsecond-Scale MD Simulations of HIV-1 DIS Kissing-Loop Complexes Predict Bulged-In Conformation of the Bulged Bases and Reveal Interesting Differences between Available Variants of the AMBER RNA Force Fields | 2.7 | 23 | Citations (PDF) |
| 175 | Untemplated Nonenzymatic Polymerization of 3′,5′cGMP: A Plausible Route to 3′,5′-Linked Oligonucleotides in Primordia | 2.7 | 32 | Citations (PDF) |
| 176 | Can We Execute Stable Microsecond-Scale Atomistic Simulations of Protein–RNA Complexes? | 5.1 | 73 | Citations (PDF) |
| 177 | The role of an active site Mg2+in HDV ribozyme self-cleavage: insights from QM/MM calculations | 2.7 | 28 | Citations (PDF) |
| 178 | Insights into Stability and Folding of GNRA and UNCG Tetraloops Revealed by Microsecond Molecular Dynamics and Well-Tempered Metadynamics | 5.1 | 67 | Citations (PDF) |
| 179 | Stacked and H-Bonded Cytosine Dimers. Analysis of the Intermolecular Interaction Energies by Parallel Quantum Chemistry and Polarizable Molecular Mechanics. | 2.7 | 22 | Citations (PDF) |
| 180 | A G-quadruplex-binding compound showing anti-tumour activity in an in vivo model for pancreatic cancer | 3.4 | 110 | Citations (PDF) |
| 181 | Conformational dynamics of bacterial and human cytoplasmic models of the ribosomal A-site | 2.9 | 9 | Citations (PDF) |
| 182 | Reactive Conformation of the Active Site in the Hairpin Ribozyme Achieved by Molecular Dynamics Simulations with ε/ζ Force Field Reparametrizations | 2.7 | 55 | Citations (PDF) |
| 183 | Electron-Driven Proton Transfer Along H2O Wires Enables Photorelaxation of πσ* States in Chromophore–Water Clusters | 4.2 | 32 | Citations (PDF) |
| 184 | Extended molecular dynamics of ac-kitpromoter quadruplex | 15.5 | 54 | Citations (PDF) |
| 185 | Chemical feasibility of the general acid/base mechanism of glmS ribozyme self‐cleavage | 2.9 | 9 | Citations (PDF) |
| 186 | Wobble pairs of the HDV ribozyme play specific roles in stabilization of active site dynamics | 2.7 | 7 | Citations (PDF) |
| 187 | Quantum Chemical Benchmark Study on 46 RNA Backbone Families Using a Dinucleotide Unit | 5.1 | 104 | Citations (PDF) |
| 188 | Refinement of the Sugar–Phosphate Backbone Torsion Beta for AMBER Force Fields Improves the Description of Z- and B-DNA | 5.1 | 519 | Citations (PDF) |
| 189 | Towards biochemically relevant QM computations on nucleic acids: controlled electronic structure geometry optimization of nucleic acid structural motifs using penalty restraint functions | 2.7 | 26 | Citations (PDF) |
| 190 | High-energy chemistry of formamide: A unified mechanism of nucleobase formation | 7.5 | 178 | Citations (PDF) |
| 191 | Molecular dynamic simulations of protein/RNA complexes: CRISPR/Csy4 endoribonuclease | 2.0 | 20 | Citations (PDF) |
| 192 | Four Ways to Oligonucleotides Without Phosphoimidazolides | 1.7 | 8 | Citations (PDF) |
| 193 | μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA | 15.5 | 217 | Citations (PDF) |
| 194 | Mechanical properties of symmetric and asymmetric DNA A-tracts: implications for looping and nucleosome positioning | 15.5 | 71 | Citations (PDF) |
| 195 | Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations | 2.9 | 79 | Citations (PDF) |
| 196 | Mechanical Model of DNA Allostery | 4.2 | 28 | Citations (PDF) |
| 197 | Ion Binding to Quadruplex DNA Stems. Comparison of MM and QM Descriptions Reveals Sizable Polarization Effects Not Included in Contemporary Simulations | 5.1 | 86 | Citations (PDF) |
| 198 | Base Pair Fraying in Molecular Dynamics Simulations of DNA and RNA | 5.1 | 172 | Citations (PDF) |
| 199 | Solvent effects on the photochemistry of 4-aminoimidazole-5-carbonitrile, a prebiotically plausible precursor of purines | 2.7 | 14 | Citations (PDF) |
| 200 | Room temperature spontaneous conversion of OCS to CO2 on the anatase TiO2 surface | 3.4 | 9 | Citations (PDF) |
| 201 | Comparison of ab Initio, DFT, and Semiempirical QM/MM Approaches for Description of Catalytic Mechanism of Hairpin Ribozyme | 5.1 | 65 | Citations (PDF) |
| 202 | Energies and 2′-Hydroxyl Group Orientations of RNA Backbone Conformations. Benchmark CCSD(T)/CBS Database, Electronic Analysis, and Assessment of DFT Methods and MD Simulations | 5.1 | 25 | Citations (PDF) |
| 203 | High-Energy Chemistry of Formamide: A Simpler Way for Nucleobase Formation | 2.5 | 81 | Citations (PDF) |
| 204 | QM Computations on Complete Nucleic Acids Building Blocks: Analysis of the Sarcin–Ricin RNA Motif Using DFT-D3, HF-3c, PM6-D3H, and MM Approaches | 5.1 | 36 | Citations (PDF) |
| 205 | Are Waters around RNA More than Just a Solvent? – An Insight from Molecular Dynamics Simulations | 5.1 | 38 | Citations (PDF) |
| 206 | Disparate HDV ribozyme crystal structures represent intermediates on a rugged free-energy landscape | 3.8 | 15 | Citations (PDF) |
| 207 | Role of S-turn2 in the Structure, Dynamics, and Function of Mitochondrial Ribosomal A-Site. A Bioinformatics and Molecular Dynamics Simulation Study | 2.7 | 9 | Citations (PDF) |
| 208 | Molecular Mechanism of Diaminomaleonitrile to Diaminofumaronitrile Photoisomerization: An Intermediate Step in the Prebiotic Formation of Purine Nucleobases | 3.4 | 15 | Citations (PDF) |
| 209 | Photochemistry of 2-Aminooxazole, a Hypothetical Prebiotic Precursor of RNA Nucleotides | 4.2 | 32 | Citations (PDF) |
| 210 | Toward Improved Description of DNA Backbone: Revisiting Epsilon and Zeta Torsion Force Field Parameters | 5.1 | 280 | Citations (PDF) |
| 211 | Nature and magnitude of aromatic base stacking in DNA and RNA: Quantum chemistry, molecular mechanics, and experiment | 2.9 | 127 | Citations (PDF) |
| 212 | Isosteric and Nonisosteric Base Pairs in RNA Motifs: Molecular Dynamics and Bioinformatics Study of the Sarcin–Ricin Internal Loop | 2.7 | 24 | Citations (PDF) |
| 213 | Effect of Guanine to Inosine Substitution on Stability of Canonical DNA and RNA Duplexes: Molecular Dynamics Thermodynamics Integration Study | 2.7 | 49 | Citations (PDF) |
| 214 | Theoretical studies of the mechanism of 2-aminooxazole formation under prebiotically plausible conditions | 2.7 | 14 | Citations (PDF) |
| 215 | Computer Folding of RNA Tetraloops? Are We There Yet? | 5.1 | 88 | Citations (PDF) |
| 216 | Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer | 5.1 | 85 | Citations (PDF) |
| 217 | Bioinformatics and Molecular Dynamics Simulation Study of L1 Stalk Non-Canonical rRNA Elements: Kink-Turns, Loops, and Tetraloops | 2.7 | 20 | Citations (PDF) |
| 218 | Benchmark quantum-chemical calculations on a complete set of rotameric families of the DNA sugar–phosphate backbone and their comparison with modern density functional theory | 2.7 | 35 | Citations (PDF) |
| 219 | Structural and energetic factors controlling the enantioselectivity of dinucleotide formation under prebiotic conditions | 2.7 | 3 | Citations (PDF) |
| 220 | Relative Stability of Different DNA Guanine Quadruplex Stem Topologies Derived Using Large-Scale Quantum-Chemical Computations | 15.0 | 114 | Citations (PDF) |
| 221 | How to understand quantum chemical computations on DNA and RNA systems? A practical guide for non-specialists | 3.5 | 46 | Citations (PDF) |
| 222 | Ribozyme Activity of RNA Nonenzymatically Polymerized from 3′,5′-Cyclic GMP | 1.7 | 17 | Citations (PDF) |
| 223 | Structural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations | 15.5 | 118 | Citations (PDF) |
| 224 | Conformational dynamics of the human propeller telomeric DNA quadruplex on a microsecond time scale | 15.5 | 72 | Citations (PDF) |
| 225 | Structure and mechanical properties of the ribosomal L1 stalk three-way junction | 15.5 | 47 | Citations (PDF) |
| 226 | How does hydroxyl introduction influence the double helical structure: the stabilization of an altritol nucleic acid:ribonucleic acid duplex | 15.5 | 8 | Citations (PDF) |
| 227 | Reference Simulations of Noncanonical Nucleic Acids with Different χ Variants of the AMBER Force Field: Quadruplex DNA, Quadruplex RNA, and Z-DNA | 5.1 | 249 | Citations (PDF) |
| 228 | Molecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structures | 3.5 | 115 | Citations (PDF) |
| 229 | A Novel Approach for Deriving Force Field Torsion Angle Parameters Accounting for Conformation-Dependent Solvation Effects | 5.1 | 28 | Citations (PDF) |
| 230 | On the Road from Formamide Ices to Nucleobases: IR-Spectroscopic Observation of a Direct Reaction between Cyano Radicals and Formamide in a High-Energy Impact Event | 15.0 | 62 | Citations (PDF) |
| 231 | Can We Accurately Describe the Structure of Adenine Tracts in B-DNA? Reference Quantum-Chemical Computations Reveal Overstabilization of Stacking by Molecular Mechanics | 5.1 | 72 | Citations (PDF) |
| 232 | Chemical Shifts in Nucleic Acids Studied by Density Functional Theory Calculations and Comparison with Experiment | 3.4 | 56 | Citations (PDF) |
| 233 | Molecular Mechanism of preQ1 Riboswitch Action: A Molecular Dynamics Study | 2.7 | 46 | Citations (PDF) |
| 234 | Formamide-Based Prebiotic Synthesis of Nucleobases: A Kinetically Accessible Reaction Route | 2.5 | 47 | Citations (PDF) |
| 235 | Understanding the Sequence Preference of Recurrent RNA Building Blocks Using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform | 5.1 | 28 | Citations (PDF) |
| 236 | Simulations of A-RNA Duplexes. The Effect of Sequence, Solute Force Field, Water Model, and Salt Concentration | 2.7 | 72 | Citations (PDF) |
| 237 | Understanding the role of base stacking in nucleic acids. MD and QM analysis of tandem GA base pairs in RNA duplexes | 2.7 | 24 | Citations (PDF) |
| 238 | Theoretical modeling on the kinetics of the arsenate-ester hydrolysis: implications to the stability of As-DNA | 2.7 | 9 | Citations (PDF) |
| 239 | Understanding RNA Flexibility Using Explicit Solvent Simulations: The Ribosomal and Group I Intron Reverse Kink-Turn Motifs | 5.1 | 52 | Citations (PDF) |
| 240 | Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles | 5.1 | 1,162 | Citations (PDF) |
| 241 | A-Minor Tertiary Interactions in RNA Kink-Turns. Molecular Dynamics and Quantum Chemical Analysis | 2.7 | 27 | Citations (PDF) |
| 242 | QM/MM Studies of Hairpin Ribozyme Self-Cleavage Suggest the Feasibility of Multiple Competing Reaction Mechanisms | 2.7 | 34 | Citations (PDF) |
| 243 | On the Geometry and Electronic Structure of the As-DNA Backbone | 4.2 | 9 | Citations (PDF) |
| 244 | Noncanonical Hydrogen Bonding in Nucleic Acids. Benchmark Evaluation of Key Base–Phosphate Interactions in Folded RNA Molecules Using Quantum-Chemical Calculations and Molecular Dynamics Simulations | 2.5 | 26 | Citations (PDF) |
| 245 | Insight into G-DNA Structural Polymorphism and Folding from Sequence and Loop Connectivity through Free Energy Analysis | 15.0 | 65 | Citations (PDF) |
| 246 | NMR Cross-Correlated Relaxation Rates Reveal Ion Coordination Sites in DNA | 15.0 | 17 | Citations (PDF) |
| 247 | On the Stabilization of Ribose by Silicate Minerals | 2.4 | 25 | Citations (PDF) |
| 248 | Prebiotic Routes to Nucleosides: A Quantum Chemical Insight into the Energetics of the Multistep Reaction Pathways | 3.4 | 30 | Citations (PDF) |
| 249 | Explaining the varied glycosidic conformational, G-tract length and sequence preferences for anti-parallel G-quadruplexes | 15.5 | 126 | Citations (PDF) |
| 250 | Cation binding to 15-TBA quadruplex DNA is a multiple-pathway cation-dependent process | 15.5 | 67 | Citations (PDF) |
| 251 | Theoretical Studies on the Intermolecular Interactions of Potentially Primordial Base‐Pair Analogues | 3.4 | 13 | Citations (PDF) |
| 252 | Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM | 15.5 | 48 | Citations (PDF) |
| 253 | Molecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosome | 15.5 | 38 | Citations (PDF) |
| 254 | Molecular Dynamics and Quantum Mechanics of RNA: Conformational and Chemical Change We Can Believe In | 17.0 | 165 | Citations (PDF) |
| 255 | Extensive Molecular Dynamics Simulations Showing That Canonical G8 and Protonated A38H+ Forms Are Most Consistent with Crystal Structures of Hairpin Ribozyme | 2.7 | 88 | Citations (PDF) |
| 256 | Structural Dynamics of the Box C/D RNA Kink-Turn and Its Complex with Proteins: The Role of the A-Minor 0 Interaction, Long-Residency Water Bridges, and Structural Ion-Binding Sites Revealed by Molecular Simulations | 2.7 | 31 | Citations (PDF) |
| 257 | An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5′-UAA/5′-GAN Internal Loops Studied by Molecular Dynamics Methods | 5.1 | 46 | Citations (PDF) |
| 258 | On the Role of the cis Hoogsteen:Sugar-Edge Family of Base Pairs in Platforms and Triplets—Quantum Chemical Insights into RNA Structural Biology | 2.7 | 33 | Citations (PDF) |
| 259 | Protonation States of the Key Active Site Residues and Structural Dynamics of the glmS Riboswitch As Revealed by Molecular Dynamics | 2.7 | 55 | Citations (PDF) |
| 260 | Conformational Energies of DNA Sugar−Phosphate Backbone: Reference QM Calculations and a Comparison with Density Functional Theory and Molecular Mechanics | 5.1 | 18 | Citations (PDF) |
| 261 | A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA | 15.5 | 367 | Citations (PDF) |
| 262 | Structural Dynamics of Thrombin-Binding DNA Aptamer d(GGTTGGTGTGGTTGG) Quadruplex DNA Studied by Large-Scale Explicit Solvent Simulations | 5.1 | 48 | Citations (PDF) |
| 263 | Performance of Molecular Mechanics Force Fields for RNA Simulations: Stability of UUCG and GNRA Hairpins | 5.1 | 393 | Citations (PDF) |
| 264 | Comparison of Intrinsic Stacking Energies of Ten Unique Dinucleotide Steps in A-RNA and B-DNA Duplexes. Can We Determine Correct Order of Stability by Quantum-Chemical Calculations? | 2.7 | 104 | Citations (PDF) |
| 265 | Large-scale compensation of errors in pairwise-additive empirical force fields: comparison of AMBER intermolecular terms with rigorous DFT-SAPT calculations | 2.7 | 86 | Citations (PDF) |
| 266 | Reference MP2/CBS and CCSD(T) quantum-chemical calculations on stacked adenine dimers. Comparison with DFT-D, MP2.5, SCS(MI)-MP2, M06-2X, CBS(SCS-D) and force field descriptions | 2.7 | 87 | Citations (PDF) |
| 267 | Molecular dynamics suggest multifunctionality of an adenine imino group in acid-base catalysis of the hairpin ribozyme | 3.8 | 42 | Citations (PDF) |
| 268 | Classification and energetics of the base-phosphate interactions in RNA | 15.5 | 173 | Citations (PDF) |
| 269 | Interactions of the “piano‐stool” [ruthenium(II) (η6‐arene)(en)CL]+ complexes with water and nucleobases; ab initio and DFT study | 4.8 | 35 | Citations (PDF) |
| 270 | Effects of Restrained Sampling Space and Nonplanar Amino Groups on Free-Energy Predictions for RNA with Imino and Sheared Tandem GA Base Pairs Flanked by GC, CG, iGiC or iCiG Base Pairs | 5.1 | 41 | Citations (PDF) |
| 271 | Structure and Dynamics of the ApA, ApC, CpA, and CpC RNA Dinucleoside Monophosphates Resolved with NMR Scalar Spin−Spin Couplings | 2.7 | 35 | Citations (PDF) |
| 272 | Reference Quantum Chemical Calculations on RNA Base Pairs Directly Involving the 2′-OH Group of Ribose | 5.1 | 28 | Citations (PDF) |
| 273 | Theoretical studies of RNA catalysis: Hybrid QM/MM methods and their comparison with MD and QM | 3.5 | 86 | Citations (PDF) |
| 274 | Elbow Flexibility of the kt38 RNA Kink-Turn Motif Investigated by Free-Energy Molecular Dynamics Simulations | 2.2 | 28 | Citations (PDF) |
| 275 | Dependence of A-RNA simulations on the choice of the force field and salt strength | 2.7 | 67 | Citations (PDF) |
| 276 | Trans Hoogsteen/Sugar Edge Base Pairing in RNA. Structures, Energies, and Stabilities from Quantum Chemical Calculations | 2.7 | 60 | Citations (PDF) |
| 277 | Balance of Attraction and Repulsion in Nucleic-Acid Base Stacking: CCSD(T)/Complete-Basis-Set-Limit Calculations on Uracil Dimer and a Comparison with the Force-Field Description | 5.1 | 56 | Citations (PDF) |
| 278 | Single Stranded Loops of Quadruplex DNA As Key Benchmark for Testing Nucleic Acids Force Fields | 5.1 | 124 | Citations (PDF) |
| 279 | Revisiting the planarity of nucleic acid bases: Pyramidilization at glycosidic nitrogen in purine bases is modulated by orientation of glycosidic torsion | 15.5 | 28 | Citations (PDF) |
| 280 | Effect of local sugar and base geometry on 13C and 15N magnetic shielding anisotropy in DNA nucleosides | 1.5 | 7 | Citations (PDF) |
| 281 | Theoretical Study on the Factors Controlling the Stability of the Borate Complexes of Ribose, Arabinose, Lyxose, and Xylose | 3.4 | 36 | Citations (PDF) |
| 282 | Conformational transitions of flanking purines in HIV‐1 RNA dimerization initiation site kissing complexes studied by CHARMM explicit solvent molecular dynamics | 2.9 | 14 | Citations (PDF) |
| 283 | Tautomeric Equilibrium, Stability, and Hydrogen Bonding in 2‘-Deoxyguanosine Monophosphate Complexed with Mg 2+ | 2.7 | 29 | Citations (PDF) |
| 284 | Geometrical and Electronic Structure Variability of the Sugar−phosphate Backbone in Nucleic Acids | 2.7 | 53 | Citations (PDF) |
| 285 | General Base Catalysis for Cleavage by the Active-Site Cytosine of the Hepatitis Delta Virus Ribozyme: QM/MM Calculations Establish Chemical Feasibility | 2.7 | 46 | Citations (PDF) |
| 286 | Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNA | 15.5 | 29 | Citations (PDF) |
| 287 | The genomic HDV ribozyme utilizes a previously unnoticed U-turn motif to accomplish fast site-specific catalysis | 15.5 | 30 | Citations (PDF) |
| 288 | Molecular dynamics simulations and their application to four-stranded DNA | 3.5 | 100 | Citations (PDF) |
| 289 | Refinement of the AMBER Force Field for Nucleic Acids: Improving the Description of α/γ Conformers | 2.2 | 2,232 | Citations (PDF) |
| 290 | Spectroscopic and Theoretical Insights into Sequence Effects of Aminofluorene-Induced Conformational Heterogeneity and Nucleotide Excision Repair, | 2.4 | 37 | Citations (PDF) |
| 291 | Conformations of Flanking Bases in HIV-1 RNA DIS Kissing Complexes Studied by Molecular Dynamics | 2.2 | 57 | Citations (PDF) |
| 292 | Theoretical Study of the Scalar Coupling Constants across the Noncovalent Contacts in RNA Base Pairs: The cis- and trans-Watson−Crick/Sugar Edge Base Pair Family | 2.7 | 12 | Citations (PDF) |
| 293 | Leading RNA Tertiary Interactions: Structures, Energies, and Water Insertion of A-Minor and P-Interactions. A Quantum Chemical View | 2.7 | 41 | Citations (PDF) |
| 294 | Theoretical Study on the Structure, Stability, and Electronic Properties of the Guanine−Zn−Cytosine Base Pair in M-DNA | 2.7 | 56 | Citations (PDF) |
| 295 | Molecular dynamics simulations of RNA: Anin silico single molecule approach | 2.9 | 140 | Citations (PDF) |
| 296 | Impact of an extruded nucleotide on cleavage activity and dynamic catalytic core conformation of the hepatitis delta virus ribozyme | 2.9 | 27 | Citations (PDF) |
| 297 | Calculation of Structural Behavior of Indirect NMR Spin−Spin Couplings in the Backbone of Nucleic Acids | 2.7 | 24 | Citations (PDF) |
| 298 | Cations and Hydration in Catalytic RNA: Molecular Dynamics of the Hepatitis Delta Virus Ribozyme | 2.2 | 126 | Citations (PDF) |
| 299 | Copper Cation Interactions with Biologically Essential Types of Ligands: A Computational DFT Study | 2.5 | 42 | Citations (PDF) |
| 300 | Indirect NMR Spin−Spin Coupling Constants 3J(P,C) and 2J(P,H) across the P−O···H−C Link Can Be Used for Structure Determination of Nucleic Acids | 15.0 | 23 | Citations (PDF) |
| 301 | Mechanism of Action of Anticancer Titanocene Derivatives: An Insight from Quantum Chemical Calculations | 2.7 | 9 | Citations (PDF) |
| 302 | Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs | 2.7 | 1,757 | Citations (PDF) |
| 303 | RNA Kink-Turns as Molecular Elbows: Hydration, Cation Binding, and Large-Scale Dynamics | 3.8 | 57 | Citations (PDF) |
| 304 | Nature of Base Stacking: Reference Quantum-Chemical Stacking Energies in Ten Unique B-DNA Base-Pair Steps | 3.4 | 218 | Citations (PDF) |
| 305 | Structure, dynamics, and elasticity of free 16s rRNA helix 44 studied by molecular dynamics simulations | 2.9 | 73 | Citations (PDF) |
| 306 | Structural and evolutionary classification of G/U wobble basepairs in the ribosome | 15.5 | 57 | Citations (PDF) |
| 307 | Molecular dynamics simulations of sarcin-ricin rRNA motif | 15.5 | 91 | Citations (PDF) |
| 308 | Trapped water molecules are essential to structural dynamics and function of a ribozyme | 7.5 | 98 | Citations (PDF) |
| 309 | Are the Hydrogen Bonds of RNA (A⋅U) Stronger Than those of DNA (A⋅T)? A Quantum Mechanics Study | 3.4 | 43 | Citations (PDF) |
| 310 | Structural and dynamic effects of single 7-hydro-8-oxoguanine bases located in a frameshift target DNA sequence | 2.1 | 21 | Citations (PDF) |
| 311 | Structural Dynamics of Precursor and Product of the RNA Enzyme from the Hepatitis Delta Virus as Revealed by Molecular Dynamics Simulations | 4.1 | 66 | Citations (PDF) |
| 312 | Hinge-Like Motions in RNA Kink-Turns: The Role of the Second A-Minor Motif and Nominally Unpaired Bases | 2.2 | 94 | Citations (PDF) |
| 313 | Sugar Edge/Sugar Edge Base Pairs in RNA: Stabilities and Structures from Quantum Chemical Calculations | 2.7 | 58 | Citations (PDF) |
| 314 | Principles of RNA Base Pairing: Structures and Energies of the Trans Watson−Crick/Sugar Edge Base Pairs | 2.7 | 76 | Citations (PDF) |
| 315 | Non-Watson−Crick Base Pairing in RNA. Quantum Chemical Analysis of the cis Watson−Crick/Sugar Edge Base Pair Family | 2.5 | 81 | Citations (PDF) |
| 316 | Sugar Pucker Modulates the Cross-Correlated Relaxation Rates across the Glycosidic Bond in DNA | 15.0 | 24 | Citations (PDF) |
| 317 | Ribosomal RNA Kink-turn Motif—A Flexible Molecular Hinge | 2.7 | 48 | Citations (PDF) |
| 318 | Metal-Mediated Deamination of Cytosine: Experiment and DFT Calculations | 14.4 | 33 | Citations (PDF) |
| 319 | Mechanismus der metallvermittelten Desaminierung von Cytosin– Experiment und DFT-Rechnungen | 1.4 | 6 | Citations (PDF) |
| 320 | Interactions of hydrated divalent metal cations with nucleic acid bases. How to relate the gas phase data to solution situation and binding selectivity in nucleic acids | 2.7 | 36 | Citations (PDF) |
| 321 | Potential Energy Surface of the Cytosine Dimer: MP2 Complete Basis Set Limit Interaction Energies, CCSD(T) Correction Term, and Comparison with the AMBER Force Field | 2.7 | 92 | Citations (PDF) |
| 322 | Accurate Interaction Energies of Hydrogen-Bonded Nucleic Acid Base Pairs | 15.0 | 453 | Citations (PDF) |
| 323 | DNA Deformability at the Base Pair Level | 15.0 | 44 | Citations (PDF) |
| 324 | Molecular Dynamics Simulations of Guanine Quadruplex Loops: Advances and Force Field Limitations | 2.2 | 117 | Citations (PDF) |
| 325 | Long-Residency Hydration, Cation Binding, and Dynamics of Loop E/Helix IV rRNA-L25 Protein Complex | 2.2 | 49 | Citations (PDF) |
| 326 | Theoretical Study of the Guanine → 6-Thioguanine Substitution in Duplexes, Triplexes, and Tetraplexes | 15.0 | 54 | Citations (PDF) |
| 327 | Theoretical Calculation of the NMR Spin−Spin Coupling Constants and the NMR Shifts Allow Distinguishability between the Specific Direct and the Water-Mediated Binding of a Divalent Metal Cation to Guanine | 15.0 | 42 | Citations (PDF) |
| 328 | Outer-Shell and Inner-Shell Coordination of Phosphate Group to Hydrated Metal Ions (Mg2+, Cu2+, Zn2+, Cd2+) in the Presence and Absence of Nucleobase. The Role of Nonelectrostatic Effects | 2.7 | 85 | Citations (PDF) |
| 329 | Molecular Interactions of Nucleic Acid Bases. A Review of Quantum-Chemical Studies | 0.0 | 78 | Citations (PDF) |
| 330 | Molecular Dynamics Simulations and Thermodynamics Analysis of DNA−Drug Complexes. Minor Groove Binding between 4‘,6-Diamidino-2-phenylindole and DNA Duplexes in Solution | 15.0 | 159 | Citations (PDF) |
| 331 | The Influence of N7Guanine Modifications on the Strength of Watson−Crick Base Pairing and Guanine N1Acidity: Comparison of Gas-Phase and Condensed-Phase Trends | 2.7 | 50 | Citations (PDF) |
| 332 | Theoretical Study of Binding of Hydrated Zn(II) and Mg(II) Cations to 5‘-Guanosine Monophosphate. Toward Polarizable Molecular Mechanics for DNA and RNA | 2.7 | 82 | Citations (PDF) |
| 333 | Unique Tertiary and Neighbor Interactions Determine Conservation Patterns of Cis Watson–Crick A/G Base-pairs | 4.1 | 71 | Citations (PDF) |
| 334 | Formation Pathways of a Guanine-Quadruplex DNA Revealed by Molecular Dynamics and Thermodynamic Analysis of the Substates | 2.2 | 133 | Citations (PDF) |
| 335 | DNA Basepair Step Deformability Inferred from Molecular Dynamics Simulations | 2.2 | 253 | Citations (PDF) |
| 336 | Non-Watson-Crick Basepairing and Hydration in RNA Motifs: Molecular Dynamics of 5S rRNA Loop E | 2.2 | 112 | Citations (PDF) |
| 337 | Molecular dynamics simulations of RNA kissing-loop motifs reveal structural dynamics and formation of cation-binding pockets | 15.5 | 70 | Citations (PDF) |
| 338 | The Influence of the Thymine C5 Methyl Group on Spontaneous Base Pair Breathing in DNA | 2.2 | 52 | Citations (PDF) |
| 339 | Loss of Hoogsteen Pairing Ability upon N1 Adenine Platinum Binding | 4.6 | 19 | Citations (PDF) |
| 340 | Toward True DNA Base-Stacking Energies: MP2, CCSD(T), and Complete Basis Set Calculations | 15.0 | 386 | Citations (PDF) |
| 341 | Intercalators. 1. Nature of Stacking Interactions between Intercalators (Ethidium, Daunomycin, Ellipticine, and 4‘,6-Diaminide-2-phenylindole) and DNA Base Pairs.Ab InitioQuantum Chemical, Density Functional Theory, and Empirical Potential Study | 15.0 | 300 | Citations (PDF) |
| 342 | Correlated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment and in aqueous solution : Part 1. Cytosine | 2.7 | 189 | Citations (PDF) |
| 343 | Critical Effect of the N2 Amino Group on Structure, Dynamics, and Elasticity of DNA Polypurine Tracts | 2.2 | 88 | Citations (PDF) |
| 344 | Two 1 : 1 binding modes for distamycin in the minor groove of d(GGCCAATTGG) | 0.2 | 49 | Citations (PDF) |
| 345 | Structural Dynamics and Cation Interactions of DNA Quadruplex Molecules Containing Mixed Guanine/Cytosine Quartets Revealed by Large-Scale MD Simulations | 15.0 | 93 | Citations (PDF) |
| 346 | Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding 1 1Edited by J. Doudna | 4.1 | 72 | Citations (PDF) |
| 347 | Molecular Dynamics of DNA Quadruplex Molecules Containing Inosine, 6-Thioguanine and 6-Thiopurine | 2.2 | 55 | Citations (PDF) |
| 348 | The influence of square planar platinum complexes on DNA base pairing. An ab initio DFT study | 2.7 | 48 | Citations (PDF) |
| 349 | How Nucleobases Rotate When Bonded to a Metal Ion: Detailed View from an Ab Initio Quantum Chemical Study of a Cytosine Complex oftrans-a2PtII | 2.7 | 20 | Citations (PDF) |
| 350 | Interactions of Hydrated Mg2+ Cation with Bases, Base Pairs, and Nucleotides. Electron Topology, Natural Bond Orbital, Electrostatic, and Vibrational Study | 2.7 | 96 | Citations (PDF) |
| 351 | Protonation of Platinated Adenine Nucleobases. Gas Phase vs Condensed Phase Picture | 4.6 | 50 | Citations (PDF) |
| 352 | A Systematic ab Initio Study of the Hydration of Selected Palladium Square-Planar Complexes. A Comparison with Platinum Analogues | 2.5 | 56 | Citations (PDF) |
| 353 | Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases | 2.9 | 426 | Citations (PDF) |
| 354 | Ab initio quantum chemical study on the zeolite catalyzed transformations of para -xylene | 1.2 | 3 | Citations (PDF) |
| 355 | Hydrogen bonding, stacking and cation binding of DNA bases | 1.2 | 122 | Citations (PDF) |
| 356 | Solution Structure of the Dodecamer d-(CATGGGCC-CATG)2is B-DNA. Experimental and Molecular Dynamics Study | 2.7 | 12 | Citations (PDF) |
| 357 | The interactions of square platinum(II) complexes with guanine and adenine: a quantum-chemical ab initio study of metalated tautomeric forms | 2.5 | 64 | Citations (PDF) |
| 358 | Sequence-dependent elastic properties of DNA 1 1Edited by I. Tinoco | 4.1 | 159 | Citations (PDF) |
| 359 | The Effect of Metal Binding to the N7 Site of Purine Nucleotides on Their Structure, Energy, and Involvement in Base Pairing | 2.7 | 150 | Citations (PDF) |
| 360 | Interaction Energies of Hydrogen-Bonded Formamide Dimer, Formamidine Dimer, and Selected DNA Base Pairs Obtained with Large Basis Sets of Atomic Orbitals | 2.5 | 104 | Citations (PDF) |
| 361 | Cation—π and Amino-Acceptor Interactions Between Hydrated Metal Cations and DNA Bases. A Quantum-Chemical View | 2.7 | 32 | Citations (PDF) |
| 362 | Nanosecond Molecular Dynamics of Zipper-like DNA Duplex Structures Containing Sheared G·A Mismatch Pairs | 15.0 | 48 | Citations (PDF) |
| 363 | Hydration of cis- and trans-platin: A pseudopotential treatment in the frame of a G3-type theory for platinum complexes | 2.8 | 98 | Citations (PDF) |
| 364 | Structure, Energetics, Vibrational Frequencies and Charge Transfer of Base Pairs, Nucleoside Pairs, Nucleotide Pairs and B-DNA Pairs of Trinucleotides:ab initioHF/MINI-1 and Empirical Force Field Study | 2.7 | 9 | Citations (PDF) |
| 365 | Aromatic Base Stacking in DNA: Fromab initioCalculations to Molecular Dynamics Simulations | 2.7 | 15 | Citations (PDF) |
| 366 | Global Minimum of the Adenine···Thymine Base Pair Corresponds Neither to Watson−Crick Nor to Hoogsteen Structures. Molecular Dynamic/Quenching/AMBER and ab Initio beyond Hartree−Fock Studies | 15.0 | 79 | Citations (PDF) |
| 367 | C−H···O Contacts in the Adenine···Uracil Watson−Crick and Uracil···Uracil Nucleic Acid Base Pairs: Nonempirical ab Initio Study with Inclusion of Electron Correlation Effects | 2.7 | 130 | Citations (PDF) |
| 368 | Interactions of Hydrated IIa and IIb Group Metal Cations with Thioguanine-Cytosine DNA Base Pair: Ab initio and Density Functional Theory Investigation of Polarization Effects, Differences Among Cations, and Flexibility of the Cation Hydration Shell | 2.7 | 45 | Citations (PDF) |
| 369 | Intramolecular flexibility of DNA bases in adenine–thymine and guanine–cytosine Watson–Crick base pairs | 4.1 | 66 | Citations (PDF) |
| 370 | Metal-Stabilized Rare Tautomers and Mispairs of DNA Bases: N6-Metalated Adenine and N4-Metalated Cytosine, Theoretical and Experimental Views | 2.5 | 147 | Citations (PDF) |
| 371 | Metal ions in non-complementary DNA base pairs: an ab initio study of Cu(I), Ag(I), and Au(I) complexes with the cytosine-adenine base pair | 2.5 | 74 | Citations (PDF) |
| 372 | Four-Stranded Intercalated Cytosine-Rich Molecules: Novel Insights into DNA Structure and Stability | 0.4 | 1 | Citations (PDF) |
| 373 | Thermodynamic Parameters for Stacking and Hydrogen Bonding of Nucleic Acid Bases in Aqueous Solution: Ab Initio/Langevin Dipoles Study | 2.7 | 155 | Citations (PDF) |
| 374 | Nanosecond Molecular Dynamics Simulations of Parallel and Antiparallel Guanine Quadruplex DNA Molecules | 15.0 | 166 | Citations (PDF) |
| 375 | Crystal Structure of d(GGCCAATTGG) Complexed with DAPI Reveals Novel Binding Mode†,‡ | 2.4 | 95 | Citations (PDF) |
| 376 | Interaction of the Adenine−Thymine Watson−Crick and Adenine−Adenine Reverse-Hoogsteen DNA Base Pairs with Hydrated Group IIa (Mg2+, Ca2+, Sr2+, Ba2+) and IIb (Zn2+, Cd2+, Hg2+) Metal Cations: Absence of the Base Pair Stabilization by Metal-Induced Polarization Effects | 2.7 | 102 | Citations (PDF) |
| 377 | Structure, Energetics, and Dynamics of the Nucleic Acid Base Pairs: Nonempirical Ab Initio Calculations | 52.6 | 997 | Citations (PDF) |
| 378 | Significant structural deformation of nucleic acid bases in stacked base pairs: an ab initio study beyond Hartree–Fock | 2.7 | 76 | Citations (PDF) |
| 379 | Molecular Dynamics of Hemiprotonated Intercalated Four-Stranded i-DNA: Stable Trajectories on a Nanosecond Scale | 15.0 | 78 | Citations (PDF) |
| 380 | Reverse Watson−Crick Isocytosine−Cytosine and Guanine−Cytosine Base Pairs Stabilized by the Formation of the Minor Tautomers of Bases. An ab Initio Study in the Gas Phase and in a Water Cluster | 2.5 | 64 | Citations (PDF) |
| 381 | Theoretical Model of the n-Propylbenzene Formation in the Benzene Isopropylation over Zeolites. An Anti-Markovnikov-Type Proton Addition Promoted by the Steric Effect of MFI and MEL Zeolite Channels | 2.7 | 15 | Citations (PDF) |
| 382 | On the potential role of the amino nitrogen atom as a hydrogen bond acceptor in macromolecules | 4.1 | 113 | Citations (PDF) |
| 383 | Uracil Dimer: Potential Energy and Free Energy Surfaces. Ab Initio beyond Hartree−Fock and Empirical Potential Studies | 2.5 | 109 | Citations (PDF) |
| 384 | Interaction between the Guanine−Cytosine Watson−Crick DNA Base Pair and Hydrated Group IIa (Mg2+, Ca2+, Sr2+, Ba2+) and Group IIb (Zn2+, Cd2+, Hg2+) Metal Cations | 2.5 | 174 | Citations (PDF) |
| 385 | Anharmonic and harmonic intermolecular vibrational modes of the DNA base pairs | 2.8 | 58 | Citations (PDF) |
| 386 | Hydrogen-bonded Trimers of DNA Bases and their Interaction with Metal Cations: Ab initio Quantum-chemical and Empirical Potential Study | 2.7 | 72 | Citations (PDF) |
| 387 | Base-base and deoxyribose-base stacking interactions in B-DNA and Z-DNA: a quantum-chemical study | 2.2 | 199 | Citations (PDF) |
| 388 | Interaction of DNA Base Pairs with Various Metal Cations (Mg2+, Ca2+, Sr2+, Ba2+, Cu+, Ag+, Au+, Zn2+, Cd2+, and Hg2+): Nonempirical ab Initio Calculations on Structures, Energies, and Nonadditivity of the Interaction | 2.7 | 227 | Citations (PDF) |
| 389 | Performance of empirical potentials (AMBER, CFF95, CVFF, CHARMM, OPLS, POLTEV), semiempirical quantum chemical methods (AM1, MNDO/M, PM3), andab initio Hartree-Fock method for interaction of DNA bases: Comparison with nonempirical beyond Hartree-Fock results | 4.8 | 255 | Citations (PDF) |
| 390 | MP2 and CCSD(T) study on hydrogen bonding, aromatic stacking and nonaromatic stacking | 2.7 | 156 | Citations (PDF) |
| 391 | Structures and Energies of Hydrogen-Bonded DNA Base Pairs. A Nonempirical Study with Inclusion of Electron Correlation | 3.1 | 404 | Citations (PDF) |
| 392 | Nonplanar DNA Base Pairs | 2.7 | 101 | Citations (PDF) |
| 393 | Amino groups in nucleic acid bases, aniline, aminopyridines, and aminotriazine are nonplanar: Results of correlatedabinitioquantum chemical calculations and anharmonic analysis of the aniline inversion motion | 2.8 | 116 | Citations (PDF) |
| 394 | Nature of Nucleic Acid−Base Stacking: Nonempirical ab Initio and Empirical Potential Characterization of 10 Stacked Base Dimers. Comparison of Stacked and H-Bonded Base Pairs | 3.1 | 413 | Citations (PDF) |
| 395 | Ab Initio Study of the Interaction of Guanine and Adenine with Various Mono- and Bivalent Metal Cations (Li+, Na+, K+, Rb+, Cs+; Cu+, Ag+, Au+; Mg2+, Ca2+, Sr2+, Ba2+; Zn2+, Cd2+, and Hg2+) | 3.1 | 215 | Citations (PDF) |
| 396 | MP2 and CCSD(T) calculations on Hbonded and stacked formamide…formamide and formamidine…formamidine dimers | 1.2 | 8 | Citations (PDF) |
| 397 | 2,4-diselenouracil tautomers: structures, energies, and a comparison with uracil and 2,4-dithiouracil | 1.2 | 19 | Citations (PDF) |
| 398 | Ability of empirical potentials (AMBER, CHARMM, CVFF, OPLS, Poltev) and semi-empirical quantum chemical methods (AM1, MNDO/M, PM3) to describe H-bonding in DNA base pairs; comparison with ab initio results | 2.7 | 42 | Citations (PDF) |
| 399 | Thermodynamic characteristics for the formation of H-bonded DNA base pairs | 2.7 | 45 | Citations (PDF) |
| 400 | Nonempirical ab initio calculations on DNA base pairs | 2.2 | 34 | Citations (PDF) |
| 401 | Base Stacking and Hydrogen Bonding in Protonated Cytosine Dimer: The Role of Molecular ion-dipole and Induction Interactions | 2.7 | 117 | Citations (PDF) |
| 402 | Hydrogen Bonding and Stacking of DNA Bases: A Review of Quantum-chemicalab initioStudies | 2.7 | 227 | Citations (PDF) |
| 403 | Density functional theory and molecular clusters | 4.8 | 518 | Citations (PDF) |
| 404 | Tautomerism of xanthine: The second-order MØller-Plesset study | 1.9 | 22 | Citations (PDF) |
| 405 | H-Bonded and Stacked DNA Base Pairs: Cytosine Dimer. An Ab Initio Second-Order Moeller-Plesset Study | 15.0 | 188 | Citations (PDF) |
| 406 | Interaction Between the Guanine Amino Group and the Adenine Six Membered Ring Stabilizes the Unusual Conformation of the CpA Step in B-DNA | 0.4 | 9 | Citations (PDF) |
| 407 | G.C. Base Pair in Parallel-Stranded DNA—A Novel Type of Base Pairing: An ab initio Quantum Chemical Study | 2.7 | 37 | Citations (PDF) |
| 408 | Interactions Between Amino Groups in DNA. An Ab Initio Study and a Comparison with Empirical Potentials | 2.7 | 27 | Citations (PDF) |
| 409 | Sequence dependent intrinsic deformability of the DNA base amino groups. An ab initio quantum chemical analysis | 1.2 | 39 | Citations (PDF) |
| 410 | Nonplanar geometries of DNA bases. Ab initio second-order Moeller-Plesset study | 3.1 | 242 | Citations (PDF) |
| 411 | Bifurcated hydrogen bonds in DNA crystal structures. An ab initio quantum chemical study | 15.0 | 139 | Citations (PDF) |
| 412 | Close mutual contacts of the amino groups in DNA | 8.1 | 33 | Citations (PDF) |
| 413 | Theoretical Analysis of the Base Stacking in DNA: Choice of the Force Field and a Comparison with the Oligonucleotide Crystal Structures | 2.7 | 51 | Citations (PDF) |
| 414 | Relationships among Rise, Cup, Roll and Stagger in DNA Suggested by Empirical Potential Studies of Base Stacking | 2.7 | 30 | Citations (PDF) |
| 415 | Different intrastrand and interstrand contributions to stacking account for roll variations at the alternating purine-pyrimidine sequences in A-DNA and A-RNA | 4.1 | 36 | Citations (PDF) |
| 416 | Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations | 15.5 | 53 | Citations (PDF) |
| 417 | RNA G-quadruplexes emerge from a compacted coil-like ensemble via multiple pathways | 15.5 | 1 | Citations (PDF) |
| 418 | Structural basis of bis-quinolinium ligands binding to quadruplex–duplex hybrids from <i>PIM1</i> oncogene | 15.5 | 1 | Citations (PDF) |
| 419 | The Kink-Turn 7 Motif: An Additional Test for RNA Force Field Performance | 5.1 | 1 | Citations (PDF) |
| 420 | Interaction of Carbon Dots with Nucleic Acids Is Driven by Their Surface Charge | 4.5 | 0 | Citations (PDF) |
| 421 | DNA guanine quadruplexes: When less is more | 8.1 | 0 | Citations (PDF) |
| 422 | Destabilization of Structured RNAs by OPC and TIP4PD Water Models | 5.1 | 0 | Citations (PDF) |
