| 1 | Journal of Computational Chemistry | 5 | 71.6K | 375 | 1 |
| 2 | Methods in Molecular Biology | 1 | 3.4K | 34622 | 9 |
| 3 | Proteins: Structure, Function and Bioinformatics | 6 | 2.0K | 321 | 82 |
| 4 | Journal of Molecular Recognition | 2 | 1.5K | 171 | 3 |
| 5 | Nature | 4 | 1.5K | 25312 | 43111 |
| 6 | Journal of Computer-Aided Molecular Design | 6 | 1.2K | 116 | 53 |
| 7 | Annual Review of Biophysics and Biomolecular Structure | 1 | 912 | 46 | 40 |
| 8 | Journal of Molecular Biology | 9 | 873 | 1349 | 1575 |
| 9 | PLoS Computational Biology | 2 | 641 | 2785 | 535 |
| 10 | Journal of Medicinal Chemistry | 5 | 628 | 6328 | 2793 |
| 11 | Expert Opinion on Drug Discovery | 1 | 622 | 436 | 4 |
| 12 | Journal of Chemical Information and Modeling | 8 | 596 | 279 | 283 |
| 13 | Structure | 5 | 562 | 371 | 436 |
| 14 | Protein Science | 2 | 462 | 1456 | 343 |
| 15 | Journal of the American Chemical Society | 3 | 310 | 27887 | 33354 |
| 16 | Nature Methods | 2 | 300 | 2449 | 8763 |
| 17 | Journal of Biological Chemistry | 5 | 290 | 21112 | 40081 |
| 18 | Annual Review of Immunology | 1 | 216 | 292 | 1440 |
| 19 | Biopolymers | 2 | 191 | 795 | 462 |
| 20 | Biochemistry | 4 | 178 | 10446 | 16669 |
| 21 | Journal of Virology | 4 | 152 | 7839 | 15544 |
| 22 | Trends in Biochemical Sciences | 4 | 142 | 150 | 2835 |
| 23 | Journal of Molecular Graphics | 5 | 120 | 10 | 38 |
| 24 | Proceedings of the National Academy of Sciences of the United States of America | 2 | 117 | 54187 | 64913 |
| 25 | Journal of Physical Chemistry B | 2 | 97 | 13784 | 15985 |
| 26 | IEEE Transactions on Visualization and Computer Graphics | 2 | 73 | 1617 | 1994 |
| 26 | IEEE Computer Graphics and Applications | 5 | 73 | 88 | 455 |
| 28 | Molecular Pharmacology | 1 | 62 | 5555 | 6697 |
| 29 | Faraday Discussions | 1 | 60 | 2936 | 2576 |
| 30 | Protein Engineering, Design and Selection | 2 | 57 | 863 | 2093 |
| 31 | Bioorganic and Medicinal Chemistry | 3 | 52 | 3650 | 10711 |
| 32 | ACS Chemical Biology | 1 | 34 | 3332 | 7132 |
| 32 | Computers & Chemistry | 1 | 34 | 189 | 192 |
| 34 | Scientific American | 1 | 31 | 847 | 1530 |
| 34 | SAR and QSAR in Environmental Research | 2 | 31 | 205 | 357 |
| 36 | ACS Infectious Diseases | 1 | 30 | 1670 | 2675 |
| 37 | CBE Life Sciences Education | 1 | 25 | 345 | 677 |
| 37 | Frontiers in Bioinformatics | 1 | 25 | 114 | 186 |
| 39 | Free Radical Research | 1 | 20 | 1803 | 4784 |
| 40 | Nature Nanotechnology | 1 | 18 | 4418 | 18298 |
| 41 | MBio | 1 | 16 | 6295 | 17983 |
| 41 | Methods and Principles in Medicinal Chemistry | 1 | 16 | 194 | 101 |
| 43 | Journal of Computational Biology | 1 | 13 | 889 | 1834 |
| 44 | Computer Graphics Forum | 1 | 11 | 1359 | 2251 |
| 45 | Microscopy Research and Technique | 1 | 10 | 1510 | 4176 |
| 45 | Journal of Chemical Software | 1 | 10 | 5 | 6 |
| 47 | Current Opinion in Structural Biology | 1 | 9 | 1319 | 5241 |
| 47 | Acta Crystallographica Section D: Biological Crystallography | 1 | 9 | 3760 | 6976 |
| 49 | Medicinal Chemistry Research | 1 | 7 | 3031 | 7073 |
| 49 | Journal of Molecular Graphics and Modelling | 1 | 7 | 1535 | 4478 |
| 51 | Journal of Computer - Aided Molecular Design | 1 | 6 | 28 | 241 |
| 51 | Current Topics in Microbiology and Immunology | 1 | 6 | 1328 | 6826 |
| 53 | Molecular Informatics | 1 | 4 | 353 | 1217 |
| 54 | Artificial Life | 1 | 3 | 362 | 1095 |
| 55 | Computers in Biology and Medicine | 1 | 2 | 4523 | 21704 |
| 56 | RSC Biomolecular Sciences | 1 | 1 | 33 | 246 |
| 57 | Clinical Chemistry | 1 | 0 | 9794 | 28714 |
| 57 | Journal of Biomolecular Structure and Dynamics | 1 | 0 | 4181 | 12891 |
| 57 | Israel Journal of Chemistry | 1 | 0 | 384 | 3396 |
