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339 peer-reviewed articles • 26,658 peer-reviewed citations • Sorted by year • Download PDF (PDF by citations)
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1The Biology of tRNA t6A Modification and Hypermodifications—Biogenesis and Disease Relevance
Journal of Molecular Biology, 2025, 437, 169091
4.112Citations (PDF)
2Contribution of tRNA sequence and modifications to the decoding preferences of E. coli and M. mycoides tRNAGlyUCC for synonymous glycine codons
Nucleic Acids Research, 2024, 52, 1374-1386
15.512Citations (PDF)
3Multiple independent origins of the female W chromosome in moths and butterflies
Science Advances, 2024, 10,
10.915Citations (PDF)
4Identification of Up47 in three thermophilic archaea, one mesophilic archaeon, and one hyperthermophilic bacterium
Rna, 2023, 29, 551-556
3.86Citations (PDF)
5Anionic G•U pairs in bacterial ribosomal rRNAs
Rna, 2023, 29, 1069-1076
3.818Citations (PDF)
6SARS-CoV-2 NSP1 induces mRNA cleavages on the ribosome
Nucleic Acids Research, 2023, 51, 8677-8690
15.535Citations (PDF)
7Assessment of three‐dimensional RNA structure prediction in CASP152.6150Citations (PDF)
8Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions
Rna, 2022, 28, 250-262
3.826Citations (PDF)
9Correlated sequence signatures are present within the genomic 5′UTR RNA and NSP1 protein in coronaviruses
Rna, 2022, 28, 729-741
3.828Citations (PDF)
10Eukaryotic tRNA sequences present conserved and amino acid-specific structural signatures
Nucleic Acids Research, 2022, 50, 4100-4112
15.533Citations (PDF)
11Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models4.429Citations (PDF)
12Data, data, burning deep, in the forests of the net2.10Citations (PDF)
13L’ARNm et ses modifications chez les eucaryotes*0.10Citations (PDF)
14Brief considerations on targeting RNA with small molecules
Faculty Reviews, 2022, 11,
4.05Citations (PDF)
15Neocles B. Leontis (1955–2020)
Rna, 2021, 27, vii-viii
3.81Citations (PDF)
16An RNA-centric historical narrative around the Protein Data Bank2.227Citations (PDF)
17Comparative study on tertiary contacts and folding of RNase P RNAs from a psychrophilic, a mesophilic/radiation-resistant, and a thermophilic bacterium
Rna, 2021, 27, 1204-1219
3.86Citations (PDF)
18Bacterial translation machinery for deliberate mistranslation of the genetic code7.517Citations (PDF)
19The viral protein NSP1 acts as a ribosome gatekeeper for shutting down host translation and fostering SARS-CoV-2 translation
Rna, 2021, 27, 253-264
3.8156Citations (PDF)
20Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea
Rna, 2020, 26, 1957-1975
3.848Citations (PDF)
21Advances in RNA 3D Structure Modeling Using Experimental Data2.378Citations (PDF)
22Unusual tertiary pairs in eukaryotic tRNAAla
Rna, 2020, 26, 1519-1529
3.88Citations (PDF)
232,6-Diaminopurine as a highly potent corrector of UGA nonsense mutations13.777Citations (PDF)
24RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers
Rna, 2020, 26, 982-995
3.8167Citations (PDF)
25The nature of the purine at position 34 in tRNAs of 4-codon boxes is correlated with nucleotides at positions 32 and 38 to maintain decoding fidelity
Nucleic Acids Research, 2020, 48, 6170-6183
15.521Citations (PDF)
26Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS
Biochimie, 2019, 164, 60-69
2.929Citations (PDF)
27Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction13.7187Citations (PDF)
28The multiple flavors of GoU pairs in RNA3.042Citations (PDF)
29Pseudouridines or how to draw on weak energy differences2.124Citations (PDF)
30Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families
Nucleic Acids Research, 2018, 46, 3841-3851
15.545Citations (PDF)
31Translation of non-standard codon nucleotides reveals minimal requirements for codon-anticodon interactions13.740Citations (PDF)
32Mutant MRPS 5 affects mitoribosomal accuracy and confers stress‐related behavioral alterations
EMBO Reports, 2018, 19,
5.239Citations (PDF)
33How to fold and protect mitochondrial ribosomal RNA with fewer guanines15.515Citations (PDF)
34Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria
Nucleic Acids Research, 2018, 46, 7425-7435
15.543Citations (PDF)
35Dimerization confers increased stability to nucleases in 5′ halves from glycine and glutamic acid tRNAs
Nucleic Acids Research, 2018, 46, 9081-9093
15.591Citations (PDF)
36RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
Rna, 2017, 23, 655-672
3.8198Citations (PDF)
37RNA Structure: Advances and Assessment of 3D Structure Prediction
Annual Review of Biophysics, 2017, 46, 483-503
12.3201Citations (PDF)
38Crystal structure and fluorescence properties of the iSpinach aptamer in complex with DFHBI
Rna, 2017, 23, 1788-1795
3.881Citations (PDF)
39A novel double kink-turn module in euryarchaeal RNase P RNAs
Nucleic Acids Research, 2017, 45, 7432-7440
15.525Citations (PDF)
40Mutations in signal recognition particle SRP54 cause syndromic neutropenia with Shwachman-Diamond–like features
Journal of Clinical Investigation, 2017, 127, 4090-4103
10.6163Citations (PDF)
41New Structural Insights into Translational Miscoding6.780Citations (PDF)
42Crystal structures of a group II intron lariat primed for reverse splicing
Science, 2016, 354,
36.256Citations (PDF)
43iSpinach: a fluorogenic RNA aptamer optimized forin vitroapplications
Nucleic Acids Research, 2016, 44, 2491-2500
15.5165Citations (PDF)
44The ribosome prohibits the G•U wobble geometry at the first position of the codon–anticodon helix
Nucleic Acids Research, 2016, , gkw431
15.565Citations (PDF)
45An integrated, structure- and energy-based view of the genetic code
Nucleic Acids Research, 2016, 44, 8020-8040
15.5287Citations (PDF)
46RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database
Nucleic Acids Research, 2016, 44, W562-W567
15.526Citations (PDF)
47Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code13.7185Citations (PDF)
48Twenty years of RNA crystallography
Rna, 2015, 21, 486-487
3.835Citations (PDF)
49A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs
PLoS Computational Biology, 2015, 11, e1004639
3.168Citations (PDF)
50Using droplet-based microfluidics to improve the catalytic properties of RNA under multiple-turnover conditions
Rna, 2015, 21, 458-469
3.877Citations (PDF)
51Structural insights into the translational infidelity mechanism13.7122Citations (PDF)
52Prediction of nucleic acid binding probability in proteins: a neighboring residue network based score
Nucleic Acids Research, 2015, 43, 5340-5351
15.554Citations (PDF)
53RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures
Rna, 2015, 21, 1066-1084
3.8196Citations (PDF)
54In-line alignment and Mg2+ coordination at the cleavage site of the env22 twister ribozyme13.792Citations (PDF)
55A PNPase Dependent CRISPR System in Listeria
PLoS Genetics, 2014, 10, e1004065
3.283Citations (PDF)
56Speciation of a group I intron into a lariat capping ribozyme7.553Citations (PDF)
57RNA Structure and Folding, edited by Dagmar Klostermeier and Christian Hammann. 2013. De Gruyter, Berlin/Boston.
Rna, 2014, 20, 1843-1843
3.80Citations (PDF)
58Isostericity and tautomerism of base pairs in nucleic acids
FEBS Letters, 2014, 588, 2464-2469
2.765Citations (PDF)
59The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest6.365Citations (PDF)
60Recognition of Watson-Crick base pairs: constraints and limits due to geometric selection and tautomerism4.154Citations (PDF)
61Structure of an A-form RNA duplex obtained by degradation of 6S RNA in a crystallization droplet0.78Citations (PDF)
62RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core
EMBO Journal, 2013, 32, 2804-2818
7.359Citations (PDF)
63Specific features of telomerase RNA fromHansenula polymorpha
Rna, 2013, 19, 1563-1574
3.818Citations (PDF)
64Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage
Rna, 2013, 19, 257-270
3.879Citations (PDF)
65High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
Nature, 2013, 494, 385-389
37.9139Citations (PDF)
66New structural insights into the decoding mechanism: Translation infidelity via a G·U pair with Watson–Crick geometry
FEBS Letters, 2013, 587, 1848-1857
2.756Citations (PDF)
67Structure-Activity Relationships among the Kanamycin Aminoglycosides: Role of Ring I Hydroxyl and Amino Groups4.151Citations (PDF)
68Loop-loop interactions involved in antisense regulation are processed by the endoribonuclease III inStaphylococcus aureus
RNA Biology, 2012, 9, 1461-1472
3.327Citations (PDF)
69RNA-Puzzles : A CASP-like evaluation of RNA three-dimensional structure prediction
Rna, 2012, 18, 610-625
3.8303Citations (PDF)
70A structural module in RNase P expands the variety of RNA kinks
RNA Biology, 2012, 9, 254-260
3.311Citations (PDF)
71Mutation in a primate-conserved retrotransposon reveals a noncoding RNA as a mediator of infantile encephalopathy7.560Citations (PDF)
72A new understanding of the decoding principle on the ribosome
Nature, 2012, 484, 256-259
37.9337Citations (PDF)
73Automated prediction of three-way junction topological families in RNA secondary structures2.820Citations (PDF)
74Identification and annotation of noncoding RNAs in Saccharomycotina
Comptes Rendus - Biologies, 2011, 334, 671-678
0.49Citations (PDF)
75Predicting and Modeling RNA Architecture7.236Citations (PDF)
76Sequence-based identification of 3D structural modules in RNA with RMDetect
Nature Methods, 2011, 8, 513-519
24.689Citations (PDF)
77A quantitative RNA code for mRNA target selection by the germline fate determinant GLD‐1
EMBO Journal, 2011, 30, 533-545
7.387Citations (PDF)
78RNase P: At last, the key finds its lock
Rna, 2011, 17, 1615-1618
3.87Citations (PDF)
79Inhibition of Aminoglycoside‐Deactivating Enzymes APH(3′)‐IIIa and AAC(6′)‐Ii by Amphiphilic Paromomycin O2′′‐Ether Analogues
ChemMedChem, 2011, 6, 1961-1966
3.133Citations (PDF)
80Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide–protein complexes
Nucleic Acids Research, 2011, 39, 8628-8637
15.578Citations (PDF)
81The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data
Applied Ontology, 2011, 6, 53-89
2.523Citations (PDF)
82Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome7.5133Citations (PDF)
83Structure-based design, synthesis and A-site rRNA co-crystal complexes of novel amphiphilic aminoglycoside antibiotics with new binding modes: A synergistic hydrophobic effect against resistant bacteria2.041Citations (PDF)
84Visualization of macromolecular structures
Nature Methods, 2010, 7, S42-S55
24.6150Citations (PDF)
85Base Pairing Constraints Drive Structural Epistasis in Ribosomal RNA Sequences
Molecular Biology and Evolution, 2010, 27, 1868-1876
4.736Citations (PDF)
86Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution7.5215Citations (PDF)
87Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels
Bioinformatics, 2010, 26, 2057-2059
4.7185Citations (PDF)
88La structure atomique du ribosome en pleine lumière
Medecine/Sciences, 2009, 25, 977-981
0.24Citations (PDF)
89The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data0.03Citations (PDF)
90A pH-responsive riboregulator
Genes and Development, 2009, 23, 2650-2662
4.6134Citations (PDF)
91The RNA structure alignment ontology
Rna, 2009, 15, 1623-1631
3.837Citations (PDF)
92Frequency and isostericity of RNA base pairs
Nucleic Acids Research, 2009, 37, 2294-2312
15.5208Citations (PDF)
93Comparative genomics of protoploid Saccharomycetaceae
Genome Research, 2009, 19, 1696-1709
4.6218Citations (PDF)
94The ribozyme core of group II introns: a structure in want of partners6.774Citations (PDF)
95New metrics for comparing and assessing discrepancies between RNA 3D structures and models
Rna, 2009, 15, 1875-1885
3.8209Citations (PDF)
96Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome
Science, 2009, 326, 1369-1373
36.2273Citations (PDF)
97The unforeseeable hammerhead ribozyme2.23Citations (PDF)
98Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes
EMBO Journal, 2008, 27, 667-678
7.328Citations (PDF)
99Toward predicting self-splicing and protein-facilitated splicing of group I introns
Rna, 2008, 14, 2013-2029
3.843Citations (PDF)
100The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates
Nucleic Acids Research, 2008, 36, 2654-2666
15.547Citations (PDF)
101Distinctive structures between chimpanzee and humanin a brain noncoding RNA
Rna, 2008, 14, 1270-1275
3.851Citations (PDF)
102The Different Role of High-Affinity and Low-Affinity Metal Ions in Cleavage by a Tertiary Stabilized Cis Hammerhead Ribozyme from Tobacco Ringspot Virus
Oligonucleotides, 2008, 18, 101-110
2.89Citations (PDF)
103RNA structure: bioinformatic analysis7.039Citations (PDF)
104Searching genomes for ribozymes and riboswitches
Genome Biology, 2007, 8, 210
12.253Citations (PDF)
105Structure-Based Design, Synthesis, and A-Site rRNA Cocrystal Complexes of Functionally Novel Aminoglycoside Antibiotics:  C2‘ ‘ Ether Analogues of Paromomycin
Journal of Medicinal Chemistry, 2007, 50, 2352-2369
5.656Citations (PDF)
106Differential Selectivity of Natural and Synthetic Aminoglycosides towards the Eukaryotic and Prokaryotic Decoding A Sites
ChemBioChem, 2007, 8, 1700-1709
2.661Citations (PDF)
107Antibacterial Aminoglycosides with a Modified Mode of Binding to the Ribosomal-RNA Decoding Site
Angewandte Chemie, 2007, 119, 3029-3029
1.40Citations (PDF)
108Molecular Contacts Between Antibiotics and the 30S Ribosomal Particle
Methods in Enzymology, 2006, , 180-202
2.168Citations (PDF)
109The interaction networks of structured RNAs
Nucleic Acids Research, 2006, 34, 6587-6604
15.5100Citations (PDF)
110Docking of Aminoglycosides to Hydrated and Flexible RNA
Journal of Medicinal Chemistry, 2006, 49, 1023-1033
5.6107Citations (PDF)
111Crystal structure of the bacterial ribosomal decoding site complexed with amikacin containing the γ-amino-α-hydroxybutyryl (haba) group
Biochimie, 2006, 88, 1027-1031
2.970Citations (PDF)
112The A-minor motifs in the decoding recognition process
Biochimie, 2006, 88, 993-999
2.943Citations (PDF)
113A molecular dynamics simulation study of an aminoglycoside/A-site RNA complex: conformational and hydration patterns
Biochimie, 2006, 88, 1061-1073
2.974Citations (PDF)
114Structure of the ribosome-bound cricket paralysis virus IRES RNA8.8193Citations (PDF)
115Proximity of conserved U6 and U2 snRNA elements to the 5′ splice site region in activated spliceosomes
EMBO Journal, 2006, 25, 2475-2486
7.354Citations (PDF)
116The building blocks and motifs of RNA architecture6.4355Citations (PDF)
117Crystal Structure of theHomo sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin
Angewandte Chemie, 2006, 118, 3388-3392
1.45Citations (PDF)
118Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site
Nucleic Acids Research, 2006, 34, 676-685
15.5237Citations (PDF)
119Topology of three-way junctions in folded RNAs
Rna, 2006, 12, 83-93
3.8294Citations (PDF)
120The RNA Ontology Consortium: An open invitation to the RNA community
Rna, 2006, 12, 533-541
3.861Citations (PDF)
121Binding of Neomycin-Class Aminoglycoside Antibiotics to Mutant Ribosomes with Alterations in the A Site of 16S rRNA4.170Citations (PDF)
122The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications
Nucleic Acids Research, 2006, 34, 1816-1835
15.591Citations (PDF)
123Riboswitch Structures: Purine Ligands Replace Tertiary Contacts
Chemistry and Biology, 2005, 12, 10-13
4.729Citations (PDF)
124Crystallographic studies of Homo sapiens ribosomal decoding A site complexed with aminoglycosides0.25Citations (PDF)
125Binding of manganese(II) to a tertiary stabilized hammerhead ribozyme as studied by electron paramagnetic resonance spectroscopy
Rna, 2005, 11, 1-6
3.857Citations (PDF)
126Analysis of the Contribution of Individual Substituents in 4,6-Aminoglycoside-Ribosome Interaction4.164Citations (PDF)
127Functional Hammerhead Ribozymes Naturally Encoded in the Genome of Arabidopsis thaliana  
Plant Cell, 2005, 17, 1877-1885
7.687Citations (PDF)
128Molecular recognition between the ribosomal decoding site and natural or non-natural aminoglycosides0.22Citations (PDF)
129A surprisingly large RNase P RNA in Candida glabrata
Rna, 2005, 11, 1064-1072
3.827Citations (PDF)
130Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments
Nucleic Acids Research, 2005, 33, 2395-2409
15.5219Citations (PDF)
131MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences
Nucleic Acids Research, 2005, 33, 4164-4171
15.523Citations (PDF)
132Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding
Nucleic Acids Research, 2005, 33, 5677-5690
15.5334Citations (PDF)
133Mutagenesis of 16S rRNA C1409-G1491 Base-pair Differentiates Between 6′OH and 6′NH3+ Aminoglycosides
Journal of Molecular Biology, 2005, 346, 467-475
4.162Citations (PDF)
134Structure of a Folding Intermediate Reveals the Interplay Between Core and Peripheral Elements in RNA Folding
Journal of Molecular Biology, 2005, 352, 712-722
4.159Citations (PDF)
135Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure
Bioinformatics, 2005, 21, 3320-3321
4.7130Citations (PDF)
136Halogen bonds in biological molecules7.51,614Citations (PDF)
137The three-dimensional architecture of the class I ligase ribozyme
Rna, 2004, 10, 176-184
3.845Citations (PDF)
138Pronouced instability of tandem IU base pairs in RNA
Nucleic Acids Research, 2004, 32, 1824-1828
15.559Citations (PDF)
139Effects of Vaccine Strain Mutations in Domain V of the Internal Ribosome Entry Segment Compared in the Wild Type Poliovirus Type 1 Context
Journal of Biological Chemistry, 2004, 279, 10261-10269
2.224Citations (PDF)
140Determination of thermodynamic parameters for HIV DIS type loop-loop kissing complexes
Nucleic Acids Research, 2004, 32, 5126-5133
15.553Citations (PDF)
141Genome evolution in yeasts
Nature, 2004, 430, 35-44
37.91,597Citations (PDF)
142Anion Binding to Nucleic Acids
Structure, 2004, 12, 379-388
3.8130Citations (PDF)
143Antibacterial Aminoglycosides with a Modified Mode of Binding to the Ribosomal-RNA Decoding Site14.493Citations (PDF)
144Antibacterial Aminoglycosides with a Modified Mode of Binding to the Ribosomal-RNA Decoding Site
Angewandte Chemie, 2004, 116, 6903-6906
1.420Citations (PDF)
145Architecture of a Diels-Alderase Ribozyme with a Preformed Catalytic Pocket
Chemistry and Biology, 2004, 11, 1217-1227
4.749Citations (PDF)
146Single Processing Center Models for Human Dicer and Bacterial RNase III
Cell, 2004, 118, 57-68
33.6946Citations (PDF)
147Symmetric K+ and Mg2+ Ion-binding Sites in the 5S rRNA Loop E Inferred from Molecular Dynamics Simulations
Journal of Molecular Biology, 2004, 335, 555-571
4.195Citations (PDF)
148Architecture and folding mechanism of the Azoarcus Group I Pre-tRNA4.158Citations (PDF)
149Analysis of RNA motifs6.4291Citations (PDF)
150The Molecular Basis for A-Site Mutations Conferring Aminoglycoside Resistance: Relationship between Ribosomal Susceptibility and X-ray Crystal Structures
ChemBioChem, 2003, 4, 1078-1088
2.6135Citations (PDF)
151RNA as a Drug Target: The Case of Aminoglycosides
ChemBioChem, 2003, 4, 1018-1023
2.6207Citations (PDF)
152Molecular recognition of aminoglycoside antibiotics by ribosomal RNA and resistance enzymes: An analysis of x-ray crystal structures
Biopolymers, 2003, 70, 42-57
2.9149Citations (PDF)
153The modular structure of Escherichia coli threonyl-tRNA synthetase as both an enzyme and a regulator of gene expression
Molecular Microbiology, 2003, 47, 961-974
2.531Citations (PDF)
154Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity8.8420Citations (PDF)
155The Mg2+ Binding Sites of the 5S rRNA Loop E Motif as Investigated by Molecular Dynamics Simulations
Chemistry and Biology, 2003, 10, 551-561
4.794Citations (PDF)
156Tools for the automatic identification and classification of RNA base pairs
Nucleic Acids Research, 2003, 31, 3450-3460
15.5283Citations (PDF)
157Molecular Modeling of the Three-dimensional Structure of the Bacterial RNase P Holoenzyme
Journal of Molecular Biology, 2003, 325, 661-675
4.1108Citations (PDF)
158Crystal Structure of Geneticin Bound to a Bacterial 16S Ribosomal RNA A Site Oligonucleotide
Journal of Molecular Biology, 2003, 326, 1175-1188
4.1187Citations (PDF)
159Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme7.5140Citations (PDF)
160Brownian-dynamics simulations of metal-ion binding to four-way junctions
Nucleic Acids Research, 2002, 30, 507-514
15.533Citations (PDF)
161The non-Watson-Crick base pairs and their associated isostericity matrices
Nucleic Acids Research, 2002, 30, 3497-3531
15.5749Citations (PDF)
162Ribozymes
Molecular Cell, 2002, 10, 703-704
13.318Citations (PDF)
163Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules
Biochimie, 2002, 84, 961-973
2.995Citations (PDF)
164Melting of the solvent structure around a RNA duplex: a molecular dynamics simulation study
Biophysical Chemistry, 2002, 95, 203-210
2.134Citations (PDF)
165Crystal Structure of a Complex between the Aminoglycoside Tobramycin and an Oligonucleotide Containing the Ribosomal Decoding A Site
Chemistry and Biology, 2002, 9, 747-755
4.7238Citations (PDF)
166Binding of tobramycin leads to conformational changes in yeast tRNAAsp and inhibition of aminoacylation
EMBO Journal, 2002, 21, 760-768
7.347Citations (PDF)
167Monitoring intermediate folding states of the td group I intron in vivo
EMBO Journal, 2002, 21, 5281-5291
7.343Citations (PDF)
168Water and ion binding around r(UpA)12and d(TpA)12Oligomers - comparison with RNA and DNA (CpG)12 duplexes
Journal of Molecular Biology, 2001, 305, 1057-1072
4.1115Citations (PDF)
169Four-way Junctions in Antisense RNA-mRNA Complexes Involved in Plasmid Replication Control: A Common Theme?
Journal of Molecular Biology, 2001, 309, 605-614
4.133Citations (PDF)
170Protein-dependent transition states for ribonucleoprotein assembly
Journal of Molecular Biology, 2001, 309, 1087-1100
4.151Citations (PDF)
171A standard reference frame for the description of nucleic acid base-pair geometry 1 1Edited by P. E. Wright 2 2This is a document of the Nomenclature Committee of IUBMB (NC-IUBMB)/IUPAC-IUBMB Joint Commission on Biochemical Nomenclature (JCBN), whose members are R. Cammack (chairman), A. Bairoch, H.M. Berman, S. Boyce, C.R. Cantor, K. Elliott, D. Horton, M. Kanehisa, A. Kotyk, G.P. Moss, N. Sharon and K.F. Tipton.
Journal of Molecular Biology, 2001, 313, 229-237
4.1579Citations (PDF)
172Statistical analysis of atomic contacts at RNA-protein interfaces3.0160Citations (PDF)
173Web Site: RNA falten
Angewandte Chemie, 2001, 113, 1175-1175
1.40Citations (PDF)
174Hydrophobic Groups Stabilize the Hydration Shell of 2′-O-Methylated RNA Duplexes
Angewandte Chemie, 2001, 113, 4784-4786
1.46Citations (PDF)
175Hydrophobic Groups Stabilize the Hydration Shell of 2′-O-Methylated RNA Duplexes14.461Citations (PDF)
176Crystal Structure of Paromomycin Docked into the Eubacterial Ribosomal Decoding A Site
Structure, 2001, 9, 647-658
3.8376Citations (PDF)
177Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature
Nucleic Acids Research, 2001, 29, 1602-1607
15.520Citations (PDF)
178TectoRNA: modular assembly units for the construction of RNA nano-objects
Nucleic Acids Research, 2001, 29, 455-463
15.5256Citations (PDF)
179Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complex
Nucleic Acids Research, 2001, 29, 3145-3153
15.531Citations (PDF)
180Somatic Mutation in Human T-Cell Leukemia Virus Type 1 Provirus and Flanking Cellular Sequences During Clonal Expansion In Vivo4.659Citations (PDF)
181Flüchtige atomare Einblicke in eine Milliarden Jahre alte molekulare Maschine
Angewandte Chemie, 2000, 112, 1651-1655
1.44Citations (PDF)
182RNA solvation: A molecular dynamics simulation perspective
Biopolymers, 2000, 56, 266-274
2.957Citations (PDF)
183RNA folding: beyond Watson–Crick pairs
Structure, 2000, 8, R55-R65
3.8127Citations (PDF)
184A three-dimensional perspective on exon binding by a group II self-splicing intron
EMBO Journal, 2000, 19, 5007-5018
7.3113Citations (PDF)
185Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA
EMBO Journal, 2000, 19, 5905-5915
7.397Citations (PDF)
186Evaluation of uranyl photocleavage as a probe to monitor ion binding and flexibility in RNAs 1 1Edited by M. Yaniv
Journal of Molecular Biology, 2000, 300, 339-352
4.127Citations (PDF)
187Water and ion binding around RNA and DNA (C,G) oligomers11Edited by I. Tinoco
Journal of Molecular Biology, 2000, 300, 1113-1131
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188Analysis of the cooperative thermal unfolding of the td intron of bacteriophage T4
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189Aminoglycoside–RNA interactions5.8205Citations (PDF)
190Non-Watson-Crick base pairs in RNA-protein recognition
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191Title is missing!
1999, 6, 540-544
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192Structural basis for the specificity of the initiation of HIV-1 reverse transcription
EMBO Journal, 1999, 18, 1038-1048
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193Molecular Dynamics Simulations of Solvated Yeast tRNAAsp
Biophysical Journal, 1999, 76, 50-64
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194Docking of Cationic Antibiotics to Negatively Charged Pockets in RNA Folds
Journal of Medicinal Chemistry, 1999, 42, 1250-1261
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195RNA as a drug target: chemical, modelling, and evolutionary tools6.8157Citations (PDF)
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198Saccharide–RNA recognition
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199Molecular dynamics investigations of hammerhead ribozyme RNA
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200Deciphering RNA recognition: aminoglycoside binding to the hammerhead ribozyme
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201Simulations of the molecular dynamics of nucleic acids6.4147Citations (PDF)
202Hydration of RNA Base Pairs2.683Citations (PDF)
203Transfer RNA Identity Rules and Conformation of the Tyrosine tRNA-like Domain of BMV RNA Imply Additional Charging by Histidine and Valine2.111Citations (PDF)
204Modified nucleotides of tRNA Pro restrict interactions in the binary Primer/Template complex of M-MuLV 1 1Edited by J. Karn
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205Aminoglycoside binding to the hammerhead ribozyme: a general model for the interaction of cationic antibiotics with RNA 1 1Edited by J. Karn
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206Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis
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207Antibiotic inhibition of RNA catalysis: neomycin B binds to the catalytic core of the td group I intron displacing essential metal ions 1 1Edited by M. Yaniv
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208A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAs
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209MANIP: an interactive tool for modelling RNA2.621Citations (PDF)
210Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme
Nucleic Acids Research, 1997, 25, 3421-3427
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211Isoalloxazine derivatives promote photocleavage of natural RNAs at G.U base pairs embedded within helices
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212HIERARCHY AND DYNAMICS OF RNA FOLDING17.4564Citations (PDF)
213RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA Asp anticodon hairpin 1 1Edited by J. Karn
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214Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA4.1146Citations (PDF)
215Rules governing the orientation of the 2′-hydroxyl group in RNA4.1164Citations (PDF)
216Inter-domain cross-linking and molecular modelling of the hairpin ribozyme
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217Nucleic acids from self-assembly to induced-fit recognition6.432Citations (PDF)
218RNA-RNA interaction is required for the formation of specific bicoid mRNA 3' UTR-STAUFEN ribonucleoprotein particles
EMBO Journal, 1997, 16, 1751-1758
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219Context dependent RNA-RNA recognition in a three-dimensional model of the 16S rRNA core2.615Citations (PDF)
220H-bond stability in the tRNA(Asp) anticodon hairpin: 3 ns of multiple molecular dynamics simulations
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221Molecular Dynamics Simulations of the Anticodon Hairpin of tRNAAsp:  Structuring Effects of C−H···O Hydrogen Bonds and of Long-Range Hydration Forces15.095Citations (PDF)
222Function of a pseudoknot in the suppression of an alternative splicing event in a group I intron
Biochimie, 1996, 78, 466-473
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223Mapping in Three Dimensions of Regions in a Catalytic RNA Protected from Attack by an Fe(II)-EDTA Reagent
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224RNA tectonics: towards RNA design
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225A Tyrosyl-tRNA Synthetase Recognizes a Conserved tRNA-like Structural Motif in the Group I Intron Catalytic Core
Cell, 1996, 87, 1135-1145
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226RNAs mediating cotranslational insertion of selenocysteine in eukaryotic selenoproteins
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227Calculations of nucleic acid conformations6.492Citations (PDF)
228Hydration of C—H groups in tRNA
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229The environment of two metal ions surrounding the splice site of a group I intron.
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230Usefulness of functional and structural solution data for the modeling of tRNA-like structures2.35Citations (PDF)
231New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme
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232Molecular dissection of the pseudoknot governing the translational regulation ofEscherichia coilribosomal protein S15
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233Multiple Molecular Dynamics Simulations of the Anticodon Loop of tRNAAsp in Aqueous Solution with Counterions15.087Citations (PDF)
234Nucleic acids6.42Citations (PDF)
235An Interactive Framework for RNA Secondary Structure Prediction with a Dynamical Treatment of Constraints
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236A pseudoknot is required for efficient translational initiation and regulation of the Escherichia coli rpsO gene coding for ribosomal protein S15
Biochemistry and Cell Biology, 1995, 73, 1131-1140
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237Role of conserved nucleotides in building the 16S rRNA binding site ofE.coliribosomal protein S8
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238DRAWNA: A program for drawing schematic views of nucleic acids2.766Citations (PDF)
239A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses
Current Biology, 1994, 4, 488-498
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240Solution Structure of the 3′-End of Brome Mosaic Virus Genomic RNAs
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241Involvement of a GNRA tetraloop in long-range RNA tertiary interactions
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242Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli.7.598Citations (PDF)
243PREDITOP: A program for antigenicity prediction2.784Citations (PDF)
244Modelling the three-dimensional structure of ribonucleic acids1.231Citations (PDF)
245Correlation between the location of antigenic sites and the prediction of turns in proteins
Immunology Letters, 1993, 36, 83-99
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246Solution Structure of Selenocysteine-inserting tRNASec from Escherichia coli
Journal of Molecular Biology, 1993, 231, 274-292
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247Monitoring of the Cooperative Unfolding of the sunY Group I Intron of Bacteriophage T4
Journal of Molecular Biology, 1993, 234, 331-346
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248Automatic display of RNA secondary structures
Bioinformatics, 1993, 9, 551-561
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249Non-canonical substrates of aminoacyl-tRNA synthetases: The tRNA-like structure of brome mosaic virus genomic RNA
Biochimie, 1993, 75, 1143-1157
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250Unique secondary and tertiary structural features of the eucaryotic selenocysteine tRNASec
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251An unusual RNA tertiary interaction has a role for the specific aminoacylation of a transfer RNA.7.5112Citations (PDF)
252Activation of the catalytic core of a group I intron by a remote 3' splice junction.
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253Molecular mimicry in translational control ofE.colithreonyl-tRNA synthetase gene. Competitive inhibition in tRNA aminoacylation and operator-repressor recognition switch using tRNA identity rules
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254The initiation accuracy of the SV40 early transcription is determined by the functional domains of two TATA elements
Nucleic Acids Research, 1992, 20, 975-982
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255Rapid Calculation of Any Dielectric Function for Molecular Dynamics Simulations of Biological Macromolecules
Molecular Simulation, 1992, 9, 193-200
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256RNA pseudoknots6.486Citations (PDF)
257Investigations on the dynamic structures of adenine- and thymine-containing DNA
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258Alternating d(G-A) sequences form a parallel-stranded DNA homoduplex.
EMBO Journal, 1992, 11, 3777-3786
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259Westhof's rule
Nature, 1992, 358, 459-460
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260RNA pseudoknots
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261Three-center hydrogen bonds in DNA: molecular dynamics of poly(dA).cntdot.poly(dT)15.072Citations (PDF)
262Three-dimensional model of Escherichia coli ribosomal 5 S RNA as deduced from structure probing in solution and computer modeling
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263Function of P11, a tertiary base pairing in self-splicing introns of subgroup IA
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264Host-guest molecular interactions: from chemistry to biology
Biochimie, 1991, 73, 1255
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265Structural studies on site-directed mutants of domain 3 of Xenopus laevis oocyte 5 S ribosomal RNA
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266Involvement of “hinge” nucleotides of Xenopus laevis 5 S rRNA in the RNA structural organization and in the binding of transcription factor TFIIIA4.141Citations (PDF)
267Function of P11, a tertiary base pairing in self-splicing introns of subgroup IA
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268Molecular dynamics simulations of DNA oligomers under various electrostatic parameters0.32Citations (PDF)
269Solution structure of human U1 snRNA. Derivation of a possible three-dimensional model
Nucleic Acids Research, 1990, 18, 3803-3811
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270Ribosomal 5S RNA from Xenopus laevis oocytes: conformation and interaction with transcription factor IIIA
Biochimie, 1990, 72, 437-452
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271Effect of mutations in domain 2 on the structural organization of oocyte 5 S rRNA from Xenopus laevis
Journal of Molecular Biology, 1990, 215, 103-111
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272Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
Journal of Molecular Biology, 1990, 216, 585-610
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273The conformation of the initiator tRNA and of the 16S rRNA from Escherichia coli during the formation of the 30S initiation complex3.47Citations (PDF)
274Search of essential parameters for the aminoacylation of viral tRNA-like molecules. Comparison with canonical transfer RNAs3.47Citations (PDF)
275Unusual helical packing in crystals of DNA bearing a mutation hot spot
Nature, 1989, 341, 459-462
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276Computer modeling from solution data of spinach chloroplast and of Xenopus laevis somatic and oocyte 5 S rRNAs
Journal of Molecular Biology, 1989, 207, 417-431
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277Solution structure of a tRNA with a large variable region: Yeast tRNASer
Journal of Molecular Biology, 1989, 206, 707-722
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278The Solution Structure of the Escherichia coli Initiator tRNA and Its Interactions with Initiation Factor 2 and the Ribosomal 30 S Subunit
Journal of Biological Chemistry, 1989, 264, 20363-20371
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279Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals0.2152Citations (PDF)
280Nonintercalative binding of proflavin to Z-DNA: structure of a complex between d(5BrC-G-5BrC-G) and proflavin
Biochemistry, 1988, 27, 5742-5747
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281Higher order structure of chloroplastic 5S ribosomal RNA from spinach
Biochemistry, 1988, 27, 4721-4730
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282Water: An Integral Part of Nucleic Acid Structure11.3293Citations (PDF)
283Hydration of transfer RNA molecules: a crystallographic study
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284Importance of Conserved Residues for the Conformation of the T-Loop in tRNAs2.663Citations (PDF)
285Hydration of oligonucleotides in crystals8.165Citations (PDF)
286Binding of Escherichia coli ribosomal protein S8 to 16 S rRNA
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287Re-refinement of the B-dodecamer d(CGCGAATTCGCG) with a Comparative Analysis of the Solvent in it and in the Z-hexamer d(5BrCG5BrCG5BrCG)2.679Citations (PDF)
288An interactive modeling program for DNA2.74Citations (PDF)
289Temperature-dependent molecular dynamics and restrained X-ray refinement simulations of a Z-DNA hexamer
Journal of Molecular Biology, 1986, 191, 699-712
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290Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles
Biochemistry, 1986, 25, 4868-4878
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291Solvation of the left-handed hexamer d(5BrC-G-5BrC-G-5BrC-G) in crystals grown at two temperatures
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292Anticodon-anticodon interaction induces conformational changes in tRNA: yeast tRNAAsp, a model for tRNA-mRNA recognition.7.565Citations (PDF)
293Crystallographic approaches to nucleic acid structure and dynamics2.70Citations (PDF)
294Visualization of energetics and conformations from molecular computer simulations2.76Citations (PDF)
295Structure of a Z-DNA with Two Different Backbone Chain Conformations. Stabilization of the Decadeoxyoligonucleotide d(CGTACGTACG) by [CO(NH3)6]3+Binding to the Guanine2.658Citations (PDF)
296Studies on Anticodon-anticodon Interactions: Hemi-protonation of Cytosines Induces Self-pairing Through the GCC Anticodon ofE. ColitRNA-Gly2.619Citations (PDF)
297The structure of yeast tRNAAsp. A model for tRNA interacting with messenger RNA2.629Citations (PDF)
298Covalent binding of a carcinogen as a probe for the dynamics of deoxyribonucleic acid
Biochemistry, 1985, 24, 2275-2284
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299Crystal structure of yeast tRNAAsp: atomic coordinates
Biochimie, 1985, 67, 597-606
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300Yeast tRNAAsp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase
Journal of Molecular Biology, 1985, 184, 455-471
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301Solvent distribution in crystals of B- and Z-Oligomers
Biochimie, 1985, 67, 811-817
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302Crystallographic refinement of yeast aspartic acid transfer RNA
Journal of Molecular Biology, 1985, 184, 119-145
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303Additions and Corrections - A Method for the Analysis of Puckering Disorder in Five-Membered Rings: The Relative Mobilities of Furanose and Proline Rings and Their Effects on Polynucleotide and Polypeptide Backbone Flexibility15.02Citations (PDF)
304Proflavine Binding to Poly(rC-rA) Inverts the CD Spectrum But Not the Helix Handedness2.62Citations (PDF)
305Correlation between segmental mobility and the location of antigenic determinants in proteins
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306A method for the analysis of puckering disorder in five-membered rings: the relative mobilities of furanose and proline rings and their effects on polynucleotide and polypeptide backbone flexibility15.072Citations (PDF)
307Loop Stereochemistry and Dynamics in Transfer RNA2.640Citations (PDF)
308Structure of a 1:2 sandwich complex of proflavine and adenosine with an unusual puckering disorder and a site shared by sulfate and water molecules0.68Citations (PDF)
309Exact method for the calculation of pseudorotation parametersP, τmand their errors. A comparison of the Altona–Sundaralingam and Cremer–Pople treatment of puckering of five-membered rings0.4197Citations (PDF)
310X-ray-structure of a cytidylyl-3',5'-adenosine-proflavine complex: a self-paired parallel-chain double helical dimer with an intercalated acridine dye.7.567Citations (PDF)
311Crystallographic studies of drug-nucleic acid interactions: Proflavine intercalation between the non-complementary base-pairs of cytidilyl-3′,5′-adenosine
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312Correlated motions in DNA
Biophysical Journal, 1980, 32, 250-252
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313Interrelationships between the pseudorotation parameters P and .tau.m and the geometry of the furanose ring15.088Citations (PDF)
314The Protonation of the 5-thymyl Radical in Single Crystals of Thymine Derivatives: E.S.R. and INDO Evidence1.14Citations (PDF)
315Radical Formation in Pyrimidines1.15Citations (PDF)
316Radical Formation in Single Crystals of Hypoxanthine·HCl·H 2 O, Inosine, and the Disodium Salt of 5′-inosine-monophosphate1.17Citations (PDF)
317The Action of Ionizing Radiation on Protein1.17Citations (PDF)
318Conformations of 3-Deazaadenosine, 3-Deaza-8-azaadenosine, and Benzimidazole-1-β-ᴅ-riboside in Solution: HRNMR-, Proton-Relaxation-Time-, and Nuclear-Overhauser- Effect Studies1.611Citations (PDF)
319Proton magnetic resonance studies of 2′-, 3′-, and 5′-deoxyadenosine conformations in solution
Nucleic Acids Research, 1977, 4, 939-953
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320Photosensitized Induction of H-addition Radicals in Frozen Aqueous Solutions of Cytosine and Uracil Derivatives1.11Citations (PDF)
321Mechanism of refolding and reactivation of lactic dehydrogenase from pig heart after dissociation in various solvent media
Biochemistry, 1977, 16, 3384-3390
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322Kinetic analysis of the reactivation of rabbit muscle aldolase after denaturation with guanidine·HCl
FEBS Letters, 1977, 73, 204-206
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323Solution Conformational Analysis of 2'-Amino-2'-Deoxyadenosine, 3'-Amino-3'-Deoxyadenosine and Puromycin by Pulsed Nuclear-Magnetic-Resonance Methods
FEBS Journal, 1977, 80, 295-304
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324INDO study of bent radical anions
Chemical Physics Letters, 1975, 32, 338-340
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325Conformation of the common purine (?) ribosides in solution: further evidence for a correlation between N-S state of the ribose moiety and syn-anti equilibrium1.740Citations (PDF)
326Ribose Conformations in the Common Purine(ß)ribosides, in Some Antibiotic Nucleosides, and in Some Isopropylidene Derivatives: A Comparison1.652Citations (PDF)
327INDO analysis of the imidazole anion and hydrogen addition radicals15.025Citations (PDF)
328The Action of Ionizing Radiation on Protein: Radical Formation in L-histidine Crystals1.16Citations (PDF)
329ESR and INDO study of radical conformations in irradiated single crystals of L‐histidine free base
Journal of Chemical Physics, 1974, 61, 3376-3381
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330E.S.R. and INDO study of radicals produced in irradiated single crystals of histidine hydrochloride monohydrate at low temperature
Molecular Physics, 1974, 28, 151-160
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331E.S.R.-spectroscopy of Radiation-produced Radicals in 9-ethyl Adenine1.17Citations (PDF)
332A Dynamic Correlation between Ribose Conformation and Glycosyl Torsion Angle of Dissolved Xanthosine Studied by Continuous-Wave-Mode and Pulsed Nuclear-Magnetic-Resonance Methods
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333Radicals in Irradiated Monocrystals of the Base-pair Complex 9-ethyl Adenine: 1-methyl Uracil1.110Citations (PDF)
334Formation of H Adduct Radicals in Cytosine and Its Derivatives1.14Citations (PDF)
335E.S.R. of Irradiated Single Crystals of Cytosine1.13Citations (PDF)
336Electron Spin Resonance of Free Radicals and Radical Pairs in Irradiated Single Crystal of 1-Methyluracil1.629Citations (PDF)
337RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools15.558Citations (PDF)
338The RNA ‐Puzzles Assessments of RNA ‐Only Targets in CASP162.612Citations (PDF)
339Catalytic and regulatory basis of tRNA t6A modification by the KEOPS complex13.70Citations (PDF)