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97 peer-reviewed articles • 16,538 peer-reviewed citations • Sorted by year • Download PDF (PDF by citations)
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1Rewilding catalyzes maturation of the humoral immune system
Science Advances, 2025, 11, eads2364
8.310Citations (PDF)
2Heterozygosity for Crohn’s disease risk allele of ATG16L1 promotes unique protein interactions and protects against bacterial infection
Immunity, 2025, 58, 1456-1468.e5
17.08Citations (PDF)
3Gene–environment interactions shape the host–microbial interface in inflammatory bowel disease
Nature Immunology, 2025, 26, 1023-1035
15.233Citations (PDF)
4Environmental stress drives clearance of a persistent enteric virus in mice
Nature Microbiology, 2025, 10, 1975-1988
10.51Citations (PDF)
5Mitigation of Osteoclast-Mediated Arthritic Bone Remodeling By Short Chain Fatty Acids
Arthritis and Rheumatology, 2024, 76, 647-659
4.847Citations (PDF)
6Antibody, not Cellular, Immune Responses to SARS-CoV-2 Vaccination Outperform Infection in Inflammatory Bowel Disease Patients.
Inflammatory Bowel Diseases, 2024, 30, 859-862
2.31Citations (PDF)
7Cytokine signature in convalescent SARS-CoV-2 patients with inflammatory bowel disease receiving vedolizumab
Scientific Reports, 2024, 14, 1-7
2.80Citations (PDF)
8Functional characterization of helminth-associated Clostridiales reveals covariates of Treg differentiation
Microbiome, 2024, 12, 1-17
8.66Citations (PDF)
9Genetic and environmental interactions contribute to immune variation in rewilded mice
Nature Immunology, 2024, 25, 1270-1282
15.220Citations (PDF)
10Assessing immune phenotypes using simple proxy measures: promise and limitations
2024, 3, kyae010
6Citations (PDF)
11Pathogen-Specific Alterations in the Gut Microbiota Predict Outcomes in Flare of Inflammatory Bowel Disease Complicated by Gastrointestinal Infection
Clinical and Translational Gastroenterology, 2023, 14, e00550
1.86Citations (PDF)
12A neonatal mouse model characterizes transmissibility of SARS-CoV-2 variants and reveals a role for ORF8
Nature Communications, 2023, 14, 1-15
11.411Citations (PDF)
13Rewilding of laboratory mice enhances granulopoiesis and immunity through intestinal fungal colonization
Science Immunology, 2023, 8, eadd6910
9.049Citations (PDF)
14Immunomodulation by Enteric Viruses
Annual Review of Virology, 2023, 10, 477-502
4.68Citations (PDF)
15Antimicrobial overproduction sustains intestinal inflammation by inhibiting Enterococcus colonization
Cell Host and Microbe, 2023, 31, 1450-1468.e8
12.558Citations (PDF)
16Bacterial contact induces polar plug disintegration to mediate whipworm egg hatching
PLoS Pathogens, 2023, 19, e1011647
3.08Citations (PDF)
17Heterozygosity for Crohn’s Disease Risk Allele of Atg16L1 Protects from Salmonella Infection
Journal of Immunology, 2023, 210, 160.03
0.81Citations (PDF)
18IL-17RA-signaling in Lgr5+ intestinal stem cells induces expression of transcription factor ATOH1 to promote secretory cell lineage commitment
Immunity, 2022, 55, 237-253.e8
17.083Citations (PDF)
19Pathogen Species Is Associated With Mortality in Nosocomial Bloodstream Infection in Patients With COVID-19.
Open Forum Infectious Diseases, 2022, 9, ofac083
0.810Citations (PDF)
20Microbial byproducts determine reproductive fitness of free-living and parasitic nematodes
Cell Host and Microbe, 2022, 30, 786-797.e8
12.515Citations (PDF)
21Microbiome-Independent Effects of Antibiotics in a Murine Model of Nosocomial Infections.
MBio, 2022, 13, e0124022
3.311Citations (PDF)
22610: PATHOGEN-SPECIFIC ALTERATIONS IN THE GUT MICROBIOTA PREDICT OUTCOMES IN FLARE OF INFLAMMATORY BOWEL DISEASE COMPLICATED BY GASTROINTESTINAL INFECTION
Gastroenterology, 2022, 162, S-154
7.40Citations (PDF)
23Efficacy of triple dose albendazole treatment for soil-transmitted helminth infections
PLoS ONE, 2022, 17, e0272821
1.619Citations (PDF)
24Interactions of Autophagy and the Immune System in Health and Diseases
Autophagy Reports, 2022, 1, 438-515
1.923Citations (PDF)
25The γδ IEL effector API5 masks genetic susceptibility to Paneth cell death
Nature, 2022, 610, 547-554
32.855Citations (PDF)
26Into the wild: How exposure to wild or domesticated fungi shapes immune responses in mice
PLoS Pathogens, 2022, 18, e1010841
3.02Citations (PDF)
27Effects of Intestinal Fungi and Viruses on Immune Responses and Inflammatory Bowel Diseases
Gastroenterology, 2021, 160, 1050-1066
7.4116Citations (PDF)
28The role of gastrointestinal pathogens in inflammatory bowel disease: a systematic review
Therapeutic Advances in Gastroenterology, 2021, 14, 17562848211004493
2.163Citations (PDF)
29AN AUTOPHAGY PROTEIN ATG16L1 PREVENTS NECROPTOSIS BY REGULATING INTERFERON SIGNALING IN THE INTESTINAL EPITHELIUM
Inflammatory Bowel Diseases, 2021, 27, S24-S25
2.30Citations (PDF)
30Nod1 promotes colorectal carcinogenesis by regulating the immunosuppressive functions of tumor-infiltrating myeloid cells
Cell Reports, 2021, 34, 108677
4.684Citations (PDF)
31Single-Cell Transcriptional Survey of Ileal-Anal Pouch Immune Cells From Ulcerative Colitis Patients
Gastroenterology, 2021, 160, 1679-1693
7.462Citations (PDF)
32Enteric viruses evoke broad host immune responses resembling those elicited by the bacterial microbiome
Cell Host and Microbe, 2021, 29, 1014-1029.e8
12.556Citations (PDF)
33Serologic Response to Messenger RNA Coronavirus Disease 2019 Vaccines in Inflammatory Bowel Disease Patients Receiving Biologic Therapies
Gastroenterology, 2021, 161, 715-718.e4
7.493Citations (PDF)
34Autophagy in major human diseases
EMBO Journal, 2021, 40, e108863
5.41,428Citations (PDF)
35Atovaquone and Berberine Chloride Reduce SARS-CoV-2 Replication In Vitro
Viruses, 2021, 13, 2437
2.315Citations (PDF)
36Autophagy and microbial pathogenesis
Cell Death and Differentiation, 2020, 27, 872-886
8.180Citations (PDF)
37Paneth Cell-Derived Lysozyme Defines the Composition of Mucolytic Microbiota and the Inflammatory Tone of the Intestine
Immunity, 2020, 53, 398-416.e8
17.0203Citations (PDF)
38A single early-in-life antibiotic course increases susceptibility to DSS-induced colitis
Genome Medicine, 2020, 12, 1-16
6.353Citations (PDF)
39Systematic review: gastrointestinal infection and incident inflammatory bowel disease
Alimentary Pharmacology and Therapeutics, 2020, 51, 1222-1232
2.759Citations (PDF)
40An intestinal organoid–based platform that recreates susceptibility to T-cell–mediated tissue injury Free
Blood, 2020, 135, 2388-2401
5.853Citations (PDF)
41Decoy exosomes provide protection against bacterial toxins
Nature, 2020, 579, 260-264
32.8220Citations (PDF)
42Reinvigorating NIH Grant Peer Review
Immunity, 2020, 52, 1-3
17.015Citations (PDF)
43Altered Immunity of Laboratory Mice in the Natural Environment Is Associated with Fungal Colonization
Cell Host and Microbe, 2020, 27, 809-822.e6
12.5140Citations (PDF)
44Rewilding Nod2 and Atg16l1 Mutant Mice Uncovers Genetic and Environmental Contributions to Microbial Responses and Immune Cell Composition
Cell Host and Microbe, 2020, 27, 830-840.e4
12.572Citations (PDF)
45Mapping the evolutionary landscape of Zika virus infection in immunocompromised mice.
Virus Evolution, 2020, 6, veaa092
2.310Citations (PDF)
46Gut epithelial TSC1/mTOR controls RIPK3-dependent necroptosis in intestinal inflammation and cancer
Journal of Clinical Investigation, 2020, 130, 2111-2128
7.1173Citations (PDF)
47IFN-I and IL-22 mediate protective effects of intestinal viral infection
Nature Microbiology, 2019, 4, 1737-1749
10.590Citations (PDF)
48Staphylococcus aureus Leukocidins Target Endothelial DARC to Cause Lethality in Mice
Cell Host and Microbe, 2019, 25, 463-470.e9
12.531Citations (PDF)
49Vasculature-associated fat macrophages readily adapt to inflammatory and metabolic challenges
Journal of Experimental Medicine, 2019, 216, 786-806
6.2144Citations (PDF)
50Universal Principled Review: A Community-Driven Method to Improve Peer Review.
Cell, 2019, 179, 1441-1445
24.48Citations (PDF)
51Autophagy and Inflammation
Annual Review of Immunology, 2018, 36, 73-101
23.5318Citations (PDF)
52Beyond self-eating: The control of nonautophagic functions and signaling pathways by autophagy-related proteins
Journal of Cell Biology, 2018, 217, 813-822
3.797Citations (PDF)
53Myeloid ATG16L1 does not affect adipose tissue inflammation or body mass in mice fed high fat diet
Obesity Research and Clinical Practice, 2018, 12, 174-186
0.65Citations (PDF)
54There was collusion: Microbes in inflammatory bowel disease
PLoS Pathogens, 2018, 14, e1007215
3.012Citations (PDF)
55The Intestinal Virome and Immunity.
Journal of Immunology, 2018, 201, 1615-1624
0.8107Citations (PDF)
56Autophagy proteins suppress protective type I interferon signalling in response to the murine gut microbiota
Nature Microbiology, 2018, 3, 1131-1141
10.568Citations (PDF)
57Enteric Infections Are Common in Patients with Flares of Inflammatory Bowel Disease
American Journal of Gastroenterology, 2018, 113, 1530
0.689Citations (PDF)
58Gut colonization with vancomycin-resistant Enterococcus and risk for subsequent enteric infection
Gut Pathogens, 2018, 10, 1-9
2.721Citations (PDF)
59A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity
Nature Communications, 2017, 8, 1-14
11.4121Citations (PDF)
60Autophagy Protein ATG16L1 Confers Tolerance to a Commensal Virus by Preventing Cell Death in the Intestinal Epithelium
Gastroenterology, 2017, 152, S183
7.40Citations (PDF)
61Autophagy protein ATG16L1 prevents necroptosis in the intestinal epithelium
Journal of Experimental Medicine, 2017, 214, 3687-3705
6.2262Citations (PDF)
62Tregs restrain dendritic cell autophagy to ameliorate autoimmunity
Journal of Clinical Investigation, 2017, 127, 2789-2804
7.1110Citations (PDF)
63Intrinsic Defense Mechanisms of the Intestinal Epithelium
Cell Host and Microbe, 2016, 19, 434-441
12.5134Citations (PDF)
64Crosstalk between autophagy and inflammatory signalling pathways: balancing defence and homeostasis
Nature Reviews Immunology, 2016, 16, 661-675
32.7420Citations (PDF)
65Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice
Nature Microbiology, 2016, 1, 1-13
10.5303Citations (PDF)
66Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)
Autophagy, 2016, 12, 1-222
12.44,526Citations (PDF)
67The Virome in Host Health and Disease
Immunity, 2015, 42, 805-813
17.0175Citations (PDF)
68Autophagy is a key tolerance mechanism during Staphylococcusaureus infection
Autophagy, 2015, 11, 1184-6
12.426Citations (PDF)
69Expanding the role of the virome: commensalism in the gut.
Journal of Virology, 2015, 89, 1951-3
2.666Citations (PDF)
70Autophagy Mediates Tolerance to Staphylococcus aureus Alpha-Toxin
Cell Host and Microbe, 2015, 17, 429-440
12.5137Citations (PDF)
71Gastrointestinal dissemination and transmission of Staphylococcus aureus following bacteremia.
Infection and Immunity, 2015, 83, 372-8
2.018Citations (PDF)
72Ubiquilin 1 Promotes IFN-γ-Induced Xenophagy of Mycobacterium tuberculosis
PLoS Pathogens, 2015, 11, e1005076
3.078Citations (PDF)
73Novel insights into Th17 mediated airway inflammation (HYP7P.259)
Journal of Immunology, 2015, 194, 191.7
0.80Citations (PDF)
74Dynamics of intestinal IgA expression after early-life antibiotic treatment. (MUC9P.738)
Journal of Immunology, 2015, 194, 205.2
0.80Citations (PDF)
75Autophagy, viruses, and intestinal immunity
Current Opinion in Gastroenterology, 2014, 30, 539
1.613Citations (PDF)
76An enteric virus can replace the beneficial function of commensal bacteria
Nature, 2014, 516, 94-98
32.8449Citations (PDF)
77Autophagy facilitates Salmonella replication in HeLa cells.
MBio, 2014, 5, e00865-14
3.386Citations (PDF)
78Bacterial Sensor Nod2 Prevents Inflammation of the Small Intestine by Restricting the Expansion of the Commensal Bacteroides vulgatus
Immunity, 2014, 41, 311-324
17.0260Citations (PDF)
79Autophagy Gene Atg16l1 Prevents Lethal T Cell Alloreactivity Mediated by Dendritic Cells
Immunity, 2014, 41, 579-591
17.095Citations (PDF)
80A Deficiency in the Autophagy Gene Atg16L1 Enhances Resistance to Enteric Bacterial Infection
Cell Host and Microbe, 2013, 14, 216-224
12.5112Citations (PDF)
81Autophagy proteins control goblet cell function by potentiating reactive oxygen species production
EMBO Journal, 2013, 32, 3130-44
5.4243Citations (PDF)
82FIP200 regulates targeting of Atg16L1 to the isolation membrane
EMBO Reports, 2013, 14, 284-91
3.6179Citations (PDF)
83Atg16L1 deficiency confers protection from uropathogenic Escherichia coli infection in vivo
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109, 11008-11013
5.491Citations (PDF)
84Guidelines for the use and interpretation of assays for monitoring autophagy
Autophagy, 2012, 8, 445-544
12.42,928Citations (PDF)
85Viruses, Autophagy Genes, and Crohn’s Disease
Viruses, 2011, 3, 1281-1311
2.329Citations (PDF)
86Virus-Plus-Susceptibility Gene Interaction Determines Crohn's Disease Gene Atg16L1 Phenotypes in Intestine
Cell, 2010, 141, 1135-1145
24.4821Citations (PDF)
87Identification of Atg5-dependent transcriptional changes and increases in mitochondrial mass in Atg5-deficient T lymphocytes
Autophagy, 2009, 5, 625-35
12.4185Citations (PDF)
88A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells
Nature, 2008, 456, 259-263
32.81,386Citations (PDF)
89Autophagosome-Independent Essential Function for the Autophagy Protein Atg5 in Cellular Immunity to Intracellular Pathogens
Cell Host and Microbe, 2008, 4, 458-469
12.5379Citations (PDF)
90The autophagy gene ATG5 plays an essential role in B lymphocyte development
Autophagy, 2008, 4, 309-14
12.4325Citations (PDF)
91The specificities of Kaposi's sarcoma-associated herpesvirus-encoded E3 ubiquitin ligases are determined by the positions of lysine or cysteine residues within the intracytoplasmic domains of their targets.
Journal of Virology, 2008, 82, 4184-9
2.655Citations (PDF)
92Sex-dependent gastrointestinal colonization resistance to MRSA is microbiota and Th17 dependent.
ELife, 0
1.96Citations (PDF)
93Autophagy and Bacterial infections
Autophagy Reports, 0, 4, 2542904
1.912Citations (PDF)
94Tonic type I interferon signaling optimizes the antiviral function of plasmacytoid dendritic cells
Nature Immunology, 0, 26, 1946-1961
15.211Citations (PDF)
95Single Cell-Seeded Human Intestinal Organoids for Organoid Research
Journal of Visualized Experiments, 0
0.20Citations (PDF)
96Pharmacological reduction of neutrophil infiltration reduces Clostridioides difficile infection severity.
MBio, 0, 17, e0343025
3.31Citations (PDF)
97Discovery Stack Pilot demonstrates the feasibility and outcomes of a scientist-designed peer-review model that separates quality and impact.
PLoS Biology, 0, 24, e3003986
3.20Citations (PDF)