| 1 | Detection of colinear blocks and synteny and evolutionary analyses based on utilization of MCScanX | 14.5 | 92 | Citations (PDF) |
| 2 | JCVI: A versatile toolkit for comparative genomics analysis | 17.2 | 269 | Citations (PDF) |
| 3 | Transcriptome dynamics provides insights into divergences of the photosynthesis pathway between <i>Saccharum officinarum</i> and <i>Saccharum spontaneum</i> | 6.2 | 12 | Citations (PDF) |
| 4 | A complete gap-free diploid genome in Saccharum complex and the genomic footprints of evolution in the highly polyploid Saccharum genus | 11.9 | 64 | Citations (PDF) |
| 5 | Fluonanobody-based nanosensor via fluorescence resonance energy transfer for ultrasensitive detection of ochratoxin A | 12.5 | 71 | Citations (PDF) |
| 6 | Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars | 26.1 | 202 | Citations (PDF) |
| 7 | GC content of plant genes is linked to past gene duplications | 2.4 | 17 | Citations (PDF) |
| 8 | A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species | 7.6 | 19 | Citations (PDF) |
| 9 | The spinach YY genome reveals sex chromosome evolution, domestication, and introgression history of the species | 8.2 | 42 | Citations (PDF) |
| 10 | SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya | 26.1 | 64 | Citations (PDF) |
| 11 | Genomic insights into the recent chromosome reduction of autopolyploid sugarcane Saccharum spontaneum | 26.1 | 99 | Citations (PDF) |
| 12 | The final piece of the Triangle of U: Evolution of the tetraploid <i>Brassica carinata</i> genome | 7.6 | 55 | Citations (PDF) |
| 13 | A high‐quality <i>Brassica napus</i> genome reveals expansion of transposable elements, subgenome evolution and disease resistance | 8.8 | 87 | Citations (PDF) |
| 14 | Genome sequence and evolution of<i>Betula platyphylla</i> | 7.3 | 86 | Citations (PDF) |
| 15 | Chromosome-level genome assembly of a regenerable maize inbred line A188 | 8.2 | 60 | Citations (PDF) |
| 16 | Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis | 26.1 | 309 | Citations (PDF) |
| 17 | Genetic variation underlying kernel size, shape, and color in two interspecific S. bicolor2 × S. halepense subpopulations | 1.3 | 4 | Citations (PDF) |
| 18 | Unzipping haplotypes in diploid and polyploid genomes | 4.0 | 77 | Citations (PDF) |
| 19 | Genomes of the Banyan Tree and Pollinator Wasp Provide Insights into Fig-Wasp CoevolutionCell, 2020, 183, 875-889.e17 | 34.1 | 131 | Citations (PDF) |
| 20 | Factorial estimating assembly base errors using k-mer abundance difference (KAD) between short reads and genome assembled sequences | 2.2 | 12 | Citations (PDF) |
| 21 | Nymphaea colorata (Blue-Petal Water Lily) | 9.9 | 4 | Citations (PDF) |
| 22 | Comparative analysis of sucrose phosphate synthase (SPS) gene family between Saccharum officinarum and Saccharum spontaneum | 4.4 | 42 | Citations (PDF) |
| 23 | A phased Vanilla planifolia genome enables genetic improvement of flavour and production | 17.3 | 72 | Citations (PDF) |
| 24 | Transmission Genetics of a Sorghum bicolor × S. halepense Backcross Populations | 4.1 | 10 | Citations (PDF) |
| 25 | Genome-Wide Characterization of DNase I-Hypersensitive Sites and Cold Response Regulatory Landscapes in Grasses | 7.6 | 43 | Citations (PDF) |
| 26 | Precision medicine integrating whole-genome sequencing, comprehensive metabolomics, and advanced imaging | 7.6 | 122 | Citations (PDF) |
| 27 | The evolutionary origin and domestication history of goldfish (
<i>Carassius auratus</i>
) | 7.6 | 90 | Citations (PDF) |
| 28 | Recent polyploidization events in three <i>Saccharum</i> founding species | 8.8 | 54 | Citations (PDF) |
| 29 | Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics | 3.0 | 13 | Citations (PDF) |
| 30 | Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data | 11.9 | 550 | Citations (PDF) |
| 31 | Single-pollen-cell sequencing for gamete-based phased diploid genome assembly in plants | 4.6 | 40 | Citations (PDF) |
| 32 | Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus | 3.3 | 133 | Citations (PDF) |
| 33 | The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication | 26.1 | 553 | Citations (PDF) |
| 34 | Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry | 3.2 | 233 | Citations (PDF) |
| 35 | The water lily genome and the early evolution of flowering plants | 38.7 | 341 | Citations (PDF) |
| 36 | Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. | 26.1 | 643 | Citations (PDF) |
| 37 | PGD: Pineapple Genomics Database | 7.3 | 38 | Citations (PDF) |
| 38 | The Sequenced Angiosperm Genomes and Genome Databases | 4.1 | 126 | Citations (PDF) |
| 39 | Genotype-Corrector: improved genotype calls for genetic mapping in F2 and RIL populations | 3.5 | 28 | Citations (PDF) |
| 40 | GOATOOLS: A Python library for Gene Ontology analyses | 3.5 | 1,132 | Citations (PDF) |
| 41 | Cataloging Plant Genome Structural Variations | 2.9 | 10 | Citations (PDF) |
| 42 | Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome | 7.6 | 108 | Citations (PDF) |
| 43 | Wild tobacco genomes reveal the evolution of nicotine biosynthesis | 7.6 | 191 | Citations (PDF) |
| 44 | Water lilies as emerging models for Darwin’s abominable mystery | 7.3 | 40 | Citations (PDF) |
| 45 | The asparagus genome sheds light on the origin and evolution of a young Y chromosome | 13.9 | 293 | Citations (PDF) |
| 46 | Profiling of Short-Tandem-Repeat Disease Alleles in 12,632 Human Whole Genomes | 6.5 | 172 | Citations (PDF) |
| 47 | PacBio Sequencing Reveals Transposable Elements as a Key Contributor to Genomic Plasticity and Virulence Variation in Magnaporthe oryzae | 19.0 | 121 | Citations (PDF) |
| 48 | Identification of individuals by trait prediction using whole-genome sequencing data | 7.6 | 140 | Citations (PDF) |
| 49 | The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism | 13.9 | 202 | Citations (PDF) |
| 50 | The pomegranate (<i>Punica granatum</i> L.) genome and the genomics of punicalagin biosynthesis | 6.2 | 148 | Citations (PDF) |
| 51 | Comparative genomic de‐convolution of the cotton genome revealed a decaploid ancestor and widespread chromosomal fractionation | 8.1 | 70 | Citations (PDF) |
| 52 | The Genome of a Southern Hemisphere Seagrass Species (<i>Zostera muelleri</i>) | 5.5 | 100 | Citations (PDF) |
| 53 | Rapid proliferation and nucleolar organizer targeting centromeric retrotransposons in cotton | 6.2 | 45 | Citations (PDF) |
| 54 | The Evolution of Photoperiod-Insensitive Flowering in Sorghum, A Genomic Model for Panicoid Grasses | 4.7 | 51 | Citations (PDF) |
| 55 | The pangenome of an agronomically important crop plant Brassica oleracea | 13.9 | 492 | Citations (PDF) |
| 56 | Directional Selection from Host Plants Is a Major Force Driving Host Specificity in Magnaporthe Species | 3.5 | 74 | Citations (PDF) |
| 57 | Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida | 11.9 | 371 | Citations (PDF) |
| 58 | A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales | 2.4 | 132 | Citations (PDF) |
| 59 | Polyribosomal RNA-Seq Reveals the Decreased Complexity and Diversity of the Arabidopsis Translatome | 2.4 | 40 | Citations (PDF) |
| 60 | SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand | 2.4 | 83 | Citations (PDF) |
| 61 | Optical mapping in plant comparative genomics | 3.2 | 44 | Citations (PDF) |
| 62 | ALLMAPS: robust scaffold ordering based on multiple maps | 12.8 | 408 | Citations (PDF) |
| 63 | The pineapple genome and the evolution of CAM photosynthesis | 26.1 | 558 | Citations (PDF) |
| 64 | MTGD: The Medicago truncatula Genome Database | 3.5 | 84 | Citations (PDF) |
| 65 | Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish<i>Raphanus raphanistrum</i>and Three Other Brassicaceae Species | 7.6 | 144 | Citations (PDF) |
| 66 | A novel approach for multi-domain and multi-gene family identification provides insights into evolutionary dynamics of disease resistance genes in core eudicot plants | 3.3 | 39 | Citations (PDF) |
| 67 | Integrated Syntenic and Phylogenomic Analyses Reveal an Ancient Genome Duplication in Monocots | 7.6 | 269 | Citations (PDF) |
| 68 | An improved genome release (version Mt4.0) for the model legume Medicago truncatula | 3.3 | 447 | Citations (PDF) |
| 69 | Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea | 8.2 | 502 | Citations (PDF) |
| 70 | The
<i>Amborella</i>
Genome and the Evolution of Flowering Plants | 36.4 | 856 | Citations (PDF) |
| 71 | Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) | 8.2 | 368 | Citations (PDF) |
| 72 | Seed shattering in a wild sorghum is conferred by a locus unrelated to domestication | 7.6 | 67 | Citations (PDF) |
| 73 | Unleashing the Genome of Brassica Rapa | 4.1 | 49 | Citations (PDF) |
| 74 | MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity | 15.7 | 6,546 | Citations (PDF) |
| 75 | PGDD: a database of gene and genome duplication in plants | 15.7 | 579 | Citations (PDF) |
| 76 | Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications | 3.3 | 118 | Citations (PDF) |
| 77 | Altered Patterns of Fractionation and Exon Deletions in <i>Brassica rapa</i> Support a Two-Step Model of Paleohexaploidy | 4.2 | 177 | Citations (PDF) |
| 78 | The Evolution of Genome Structure | 0.0 | 1 | Citations (PDF) |
| 79 | A physical map for the Amborella trichopodagenome sheds light on the evolution of angiosperm genome structure | 8.2 | 29 | Citations (PDF) |
| 80 | Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage | 2.8 | 20 | Citations (PDF) |
| 81 | Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms | 2.4 | 152 | Citations (PDF) |
| 82 | Comparative analysis of peanut NBS‐LRR gene clusters suggests evolutionary innovation among duplicated domains and erosion of gene microsynteny | 8.1 | 71 | Citations (PDF) |
| 83 | Screening synteny blocks in pairwise genome comparisons through integer programming | 3.0 | 163 | Citations (PDF) |
| 84 | Gobe: an interactive, web-based tool for comparative genomic visualization | 4.8 | 7 | Citations (PDF) |
| 85 | Seventy Million Years of Concerted Evolution of a Homoeologous Chromosome Pair, in Parallel, in Major Poaceae Lineages | 7.6 | 93 | Citations (PDF) |
| 86 | Different Gene Families in<i>Arabidopsis thaliana</i>Transposed in Different Epochs and at Different Frequencies throughout the Rosids | 7.6 | 42 | Citations (PDF) |
| 87 | Domestication and plant genomes | 7.2 | 96 | Citations (PDF) |
| 88 | Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes | 3.3 | 188 | Citations (PDF) |
| 89 | A draft physical map of a D-genome cotton species (Gossypium raimondii) | 3.3 | 49 | Citations (PDF) |
| 90 | Angiosperm genome comparisons reveal early polyploidy in the monocot lineage | 7.6 | 299 | Citations (PDF) |
| 91 | Insights from the Comparison of Plant Genome Sequences | 24.7 | 217 | Citations (PDF) |
| 92 | Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization | 4.6 | 89 | Citations (PDF) |
| 93 | Sixty Million Years in Evolution of Soft Grain Trait in Grasses: Emergence of the Softness Locus in the Common Ancestor of Pooideae and Ehrhartoideae, after their Divergence from Panicoideae | 4.7 | 48 | Citations (PDF) |
| 94 | Comparative Genomics of Grasses Promises a Bountiful Harvest | 5.5 | 44 | Citations (PDF) |
| 95 | QUBIC: a qualitative biclustering algorithm for analyses of gene expression data | 15.7 | 243 | Citations (PDF) |
| 96 | Duplication and Divergence of Grass Genomes: Integrating the Chloridoids | 1.3 | 23 | Citations (PDF) |
| 97 | The Sorghum bicolor genome and the diversification of grasses | 38.7 | 2,888 | Citations (PDF) |
| 98 | Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses | 12.8 | 162 | Citations (PDF) |
| 99 | Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps | 4.6 | 575 | Citations (PDF) |
| 100 | Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids | 5.5 | 413 | Citations (PDF) |
| 101 | Evolutionary fate of rhizome-specific genes in a non-rhizomatous Sorghum genotype | 3.2 | 31 | Citations (PDF) |
| 102 | Extensive Concerted Evolution of Rice Paralogs and the Road to Regaining Independence | 4.2 | 86 | Citations (PDF) |
| 103 | Phylogenetic relationships in
Elymus
(Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast
trnL‐F
sequences | 8.1 | 160 | Citations (PDF) |
| 104 | Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses | 7.6 | 143 | Citations (PDF) |
| 105 | Single-base resolution map of evolutionary constraints and annotation of conserved elements across major grass genomes | 2.4 | 13 | Citations (PDF) |
| 106 | Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome | 1.6 | 158 | Citations (PDF) |
