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Publications

13 peer-reviewed articles • 1,625 peer-reviewed citations • Sorted by year • Download PDF (PDF by citations)
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1Time-Resolved Multiomics Illustrates Host and Gut Microbe Interactions during Salmonella Infection
Journal of Proteome Research, 2024, 23, 4864-4877
2.34Citations (PDF)
2kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase.
Bioinformatics, 2023
3.316Citations (PDF)
3Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers
Microbiome, 2023, 11, 1-22
8.611Citations (PDF)
4ORT: a workflow linking genome-scale metabolic models with reactive transport codes
Bioinformatics, 2022, 38, 778-784
3.35Citations (PDF)
5Optimization of proteomics sample preparation for identification of host and bacterial proteins in mouse feces
Analytical and Bioanalytical Chemistry, 2022, 414, 2317-2331
2.712Citations (PDF)
6Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments.
MSystems, 2022, 7, e0051622
3.036Citations (PDF)
7DRAM for distilling microbial metabolism to automate the curation of microbiome function
Nucleic Acids Research, 2020, 48, 8883-8900
11.4918Citations (PDF)
8Gut microbiota from high-risk men who have sex with men drive immune activation in gnotobiotic mice and in vitro HIV infection
PLoS Pathogens, 2019, 15, e1007611
3.065Citations (PDF)
9Prevalence and Source of Fecal and Oral Bacteria on Infant, Child, and Adult Hands.
MSystems, 2018
3.043Citations (PDF)
10Differences in fecal microbial metabolites and microbiota of children with autism spectrum disorders
Anaerobe, 2018, 49, 121-131
2.0322Citations (PDF)
11An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men
Microbiome, 2018, 6, 1-16
8.6141Citations (PDF)
12Microbiome and metabolome data integration provides insight into health and disease
Translational Research, 2017, 189, 51-64
3.876Citations (PDF)
13Diverse Intestinal Bacteria Contain Putative Zwitterionic Capsular Polysaccharides with Anti-inflammatory Properties
Cell Host and Microbe, 2016, 20, 535-547
12.5127Citations (PDF)