| 1 | TOP2B is required for compartment strength changes upon retinoic acid treatment in SH-SY5Y cells | 2.2 | 0 | Citations (PDF) |
| 2 | Rules of engagement for condensins and cohesins guide mitotic chromosome formation | 36.2 | 37 | Citations (PDF) |
| 3 | Mitotic chromosomes harbor cell type– and species-specific structural features within a universal loop array conformation | 4.6 | 3 | Citations (PDF) |
| 4 | Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells | 2.6 | 5 | Citations (PDF) |
| 5 | Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns | 25.2 | 46 | Citations (PDF) |
| 6 | Mitotic chromosomes are self-entangled and disentangle through a topoisomerase-II-dependent two-stage exit from mitosis | 13.3 | 38 | Citations (PDF) |
| 7 | Polymer Physics Models Reveal Structural Folding Features of Single-Molecule Gene Chromatin Conformations | 4.4 | 3 | Citations (PDF) |
| 8 | The chromosome folding problem and how cells solve itCell, 2024, 187, 6424-6450 | 33.7 | 76 | Citations (PDF) |
| 9 | The little skate genome and the evolutionary emergence of wing-like fins | 37.9 | 63 | Citations (PDF) |
| 10 | Mechanisms of insertions at a DNA double-strand break | 13.3 | 20 | Citations (PDF) |
| 11 | Multi-omics comparison of malignant and normal uveal melanocytes reveals molecular features of uveal melanoma | 6.3 | 18 | Citations (PDF) |
| 12 | RNA-mediated symmetry breaking enables singular olfactory receptor choice | 37.9 | 40 | Citations (PDF) |
| 13 | Revisiting chromatin packaging in mouse sperm | 4.6 | 30 | Citations (PDF) |
| 14 | Mechanisms of Chromosome Folding and Nuclear Organization: Their Interplay and Open Questions | 7.2 | 108 | Citations (PDF) |
| 15 | Spatial organization of transcribed eukaryotic genes | 16.3 | 111 | Citations (PDF) |
| 16 | Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling | 3.4 | 23 | Citations (PDF) |
| 17 | Chromosome-Level Reference Genomes for Two Strains of
Caenorhabditis briggsae
: An Improved Platform for Comparative Genomics | 2.4 | 36 | Citations (PDF) |
| 18 | Nutritional control regulates symbiont proliferation and life history in coral-dinoflagellate symbiosis | 3.9 | 32 | Citations (PDF) |
| 19 | Cohesin-mediated loop anchors confine the locations of human replication origins | 37.9 | 114 | Citations (PDF) |
| 20 | CTCF–CTCF loops and intra-TAD interactions show differential dependence on cohesin ring integrity | 16.3 | 59 | Citations (PDF) |
| 21 | Regulation of the mitotic chromosome folding machines | 3.8 | 8 | Citations (PDF) |
| 22 | Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization | 8.8 | 64 | Citations (PDF) |
| 23 | A cohesin traffic pattern genetically linked to gene regulation | 8.8 | 74 | Citations (PDF) |
| 24 | Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers | 8.8 | 116 | Citations (PDF) |
| 25 | Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics | 25.2 | 126 | Citations (PDF) |
| 26 | Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AML | 5.4 | 79 | Citations (PDF) |
| 27 | Genetic and spatial organization of the unusual chromosomes of the dinoflagellate Symbiodinium microadriaticum | 25.2 | 80 | Citations (PDF) |
| 28 | Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation | 2.4 | 36 | Citations (PDF) |
| 29 | Symbiodinium microadriaticum (coral microalgal endosymbiont) | 9.8 | 6 | Citations (PDF) |
| 30 | Systematic evaluation of chromosome conformation capture assays | 24.6 | 227 | Citations (PDF) |
| 31 | Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture | 13.7 | 41 | Citations (PDF) |
| 32 | Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts | 13.3 | 120 | Citations (PDF) |
| 33 | Detecting chromatin interactions between and along sister chromatids with SisterC | 24.6 | 48 | Citations (PDF) |
| 34 | Expanded encyclopaedias of DNA elements in the human and mouse genomes | 37.9 | 2,189 | Citations (PDF) |
| 35 | Multi-contact 3C reveals that the human genome during interphase is largely not entangled | 8.8 | 86 | Citations (PDF) |
| 36 | rad21 Is Involved in Corneal Stroma Development by Regulating Neural Crest Migration | 4.4 | 5 | Citations (PDF) |
| 37 | Ultrastructural Details of Mammalian Chromosome Architecture | 13.3 | 571 | Citations (PDF) |
| 38 | Mechanisms and Functions of Chromosome Compartmentalization | 6.7 | 269 | Citations (PDF) |
| 39 | SPEN integrates transcriptional and epigenetic control of X-inactivation | 37.9 | 193 | Citations (PDF) |
| 40 | Clustering of strong replicators associated with active promoters is sufficient to establish an early‐replicating domain | 7.3 | 13 | Citations (PDF) |
| 41 | The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos | 13.7 | 56 | Citations (PDF) |
| 42 | A chromosome folding intermediate at the condensin-to-cohesin transition during telophase | 16.3 | 203 | Citations (PDF) |
| 43 | Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation | 16.4 | 151 | Citations (PDF) |
| 44 | Highly structured homolog pairing reflects functional organization of the Drosophila genome | 13.7 | 69 | Citations (PDF) |
| 45 | Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment | 4.4 | 33 | Citations (PDF) |
| 46 | Heterochromatin drives compartmentalization of inverted and conventional nuclei | 37.9 | 640 | Citations (PDF) |
| 47 | Measuring the reproducibility and quality of Hi-C data | 8.1 | 169 | Citations (PDF) |
| 48 | Extensive Heterogeneity and Intrinsic Variation in Spatial Genome OrganizationCell, 2019, 176, 1502-1515.e10 | 33.7 | 453 | Citations (PDF) |
| 49 | The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome | 13.7 | 110 | Citations (PDF) |
| 50 | CTCF sites display cell cycle–dependent dynamics in factor binding and nucleosome positioning | 4.6 | 137 | Citations (PDF) |
| 51 | A pathway for mitotic chromosome formation | 36.2 | 757 | Citations (PDF) |
| 52 | Higher-Order Organization Principles of Pre-translational mRNPs | 13.3 | 78 | Citations (PDF) |
| 53 | Integrative detection and analysis of structural variation in cancer genomes | 25.2 | 347 | Citations (PDF) |
| 54 | 3C-Based Chromatin Interaction Analyses | 0.3 | 13 | Citations (PDF) |
| 55 | CBFβ-SMMHC Inhibition Triggers Apoptosis by Disrupting MYC Chromatin Dynamics in Acute Myeloid LeukemiaCell, 2018, 174, 172-186.e21 | 33.7 | 83 | Citations (PDF) |
| 56 | C-BERST: defining subnuclear proteomic landscapes at genomic elements with dCas9–APEX2 | 24.6 | 144 | Citations (PDF) |
| 57 | Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation | 13.3 | 331 | Citations (PDF) |
| 58 | Epigenetic characteristics of the mitotic chromosome in 1D and 3D | 6.7 | 31 | Citations (PDF) |
| 59 | Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation | 3.5 | 301 | Citations (PDF) |
| 60 | Shelterin components mediate genome reorganization in response to replication stress | 7.5 | 17 | Citations (PDF) |
| 61 | Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic CompartmentalizationCell, 2017, 169, 930-944.e22 | 33.7 | 1,732 | Citations (PDF) |
| 62 | SMC complexes differentially compact mitotic chromosomes according to genomic context | 16.3 | 154 | Citations (PDF) |
| 63 | The
HoxD
cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes | 4.6 | 179 | Citations (PDF) |
| 64 | Genetics and Genomics of Longitudinal Lung Function Patterns in Individuals with Asthma | 8.9 | 23 | Citations (PDF) |
| 65 | Crystal structure of the DNA binding domain of the transcription factor T-bet suggests simultaneous recognition of distant genome sites | 7.5 | 26 | Citations (PDF) |
| 66 | CTCF-mediated topological boundaries during development foster appropriate gene regulation | 4.6 | 181 | Citations (PDF) |
| 67 | A Guide to Packing Your DNA | 33.7 | 2 | Citations (PDF) |
| 68 | Extremely Long-Range Chromatin Loops Link Topological Domains to Facilitate a Diverse Antibody Repertoire | 6.3 | 86 | Citations (PDF) |
| 69 | Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming | 16.4 | 131 | Citations (PDF) |
| 70 | TAD disruption as oncogenic driver | 3.2 | 252 | Citations (PDF) |
| 71 | Patterns of Growth and Decline in Lung Function in Persistent Childhood Asthma | 34.6 | 554 | Citations (PDF) |
| 72 | RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells | 2.4 | 73 | Citations (PDF) |
| 73 | Structural organization of the inactive X chromosome in the mouse | 37.9 | 423 | Citations (PDF) |
| 74 | SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells | 4.6 | 106 | Citations (PDF) |
| 75 | Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus | 6.5 | 147 | Citations (PDF) |
| 76 | The Conformation of Yeast Chromosome III Is Mating Type Dependent and Controlled by the Recombination Enhancer | 6.3 | 42 | Citations (PDF) |
| 77 | Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells | 8.1 | 239 | Citations (PDF) |
| 78 | Condensin-driven remodelling of X chromosome topology during dosage compensation | 37.9 | 972 | Citations (PDF) |
| 79 | Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin | 4.6 | 161 | Citations (PDF) |
| 80 | Condensin promotes the juxtaposition of DNA flanking its loading site in Bacillus subtilis | 4.6 | 260 | Citations (PDF) |
| 81 | Hi-C in Budding Yeast | 0.3 | 22 | Citations (PDF) |
| 82 | Measuring Chromatin Structure in Budding Yeast: Figure 1. | 0.3 | 4 | Citations (PDF) |
| 83 | Chromosome Conformation Capture Carbon Copy (5C) in Budding Yeast | 0.3 | 5 | Citations (PDF) |
| 84 | Randomized Ligation Control for Chromosome Conformation Capture | 0.3 | 4 | Citations (PDF) |
| 85 | Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C | 33.7 | 738 | Citations (PDF) |
| 86 | High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila | 13.3 | 84 | Citations (PDF) |
| 87 | Long-Range Chromatin Interactions | 7.2 | 258 | Citations (PDF) |
| 88 | The yeast genome undergoes significant topological reorganization in quiescence | 15.5 | 81 | Citations (PDF) |
| 89 | Chromosome Conformation Capture (3C) in Budding Yeast | 0.3 | 12 | Citations (PDF) |
| 90 | Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells | 33.7 | 476 | Citations (PDF) |
| 91 | Structural and functional diversity of Topologically Associating Domains | 2.7 | 313 | Citations (PDF) |
| 92 | The Hitchhiker’s guide to Hi-C analysis: Practical guidelines | 3.5 | 406 | Citations (PDF) |
| 93 | Two ways to fold the genome during the cell cycle: insights obtained with chromosome conformation capture | 3.2 | 73 | Citations (PDF) |
| 94 | Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription | 33.7 | 451 | Citations (PDF) |
| 95 | Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe | 37.9 | 289 | Citations (PDF) |
| 96 | Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease | 7.5 | 25 | Citations (PDF) |
| 97 | Segmental folding of chromosomes: A basis for structural and regulatory chromosomal neighborhoods? | 2.1 | 172 | Citations (PDF) |
| 98 | Organization of the Mitotic Chromosome | 36.2 | 1,027 | Citations (PDF) |
| 99 | Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments | 4.6 | 299 | Citations (PDF) |
| 100 | Flexible ordering of antibody class switch and V(D)J joining during B-cell ontogeny | 4.6 | 47 | Citations (PDF) |
| 101 | High-throughput genome scaffolding from in vivo DNA interaction frequency | 29.8 | 197 | Citations (PDF) |
| 102 | Correlated alterations in genome organization, histone methylation, and DNA–lamin A/C interactions in Hutchinson-Gilford progeria syndrome | 4.6 | 307 | Citations (PDF) |
| 103 | The Hierarchy of the 3D Genome | 13.3 | 693 | Citations (PDF) |
| 104 | Nuclear Biology: What’s Been Most Surprising?Cell, 2013, 152, 1207-1208 | 33.7 | 3 | Citations (PDF) |
| 105 | Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data | 47.0 | 1,052 | Citations (PDF) |
| 106 | Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage CommitmentCell, 2013, 153, 1281-1295 | 33.7 | 1,160 | Citations (PDF) |
| 107 | HiTC: exploration of high-throughput ‘C’ experiments | 4.7 | 198 | Citations (PDF) |
| 108 | An encyclopedia of mouse DNA elements (Mouse ENCODE) | 8.1 | 437 | Citations (PDF) |
| 109 | Hi–C: A comprehensive technique to capture the conformation of genomes | 3.5 | 1,142 | Citations (PDF) |
| 110 | From cells to chromatin: Capturing snapshots of genome organization with 5C technology | 3.5 | 44 | Citations (PDF) |
| 111 | Analysis of long-range chromatin interactions using Chromosome Conformation Capture | 3.5 | 154 | Citations (PDF) |
| 112 | The long-range interaction landscape of gene promoters | 37.9 | 1,420 | Citations (PDF) |
| 113 | Spatial Organization of the Mouse Genome and Its Role in Recurrent Chromosomal Translocations | 33.7 | 523 | Citations (PDF) |
| 114 | Iterative correction of Hi-C data reveals hallmarks of chromosome organization | 24.6 | 1,420 | Citations (PDF) |
| 115 | The accessible chromatin landscape of the human genome | 37.9 | 2,636 | Citations (PDF) |
| 116 | Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells | 2.3 | 62 | Citations (PDF) |
| 117 | The context of gene expression regulation | 2.2 | 24 | Citations (PDF) |
| 118 | Spatial partitioning of the regulatory landscape of the X-inactivation centre | 37.9 | 2,977 | Citations (PDF) |
| 119 | Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping | 24.6 | 134 | Citations (PDF) |
| 120 | The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation | 13.3 | 267 | Citations (PDF) |
| 121 | A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression | 37.9 | 1,883 | Citations (PDF) |
| 122 | Chromatin globules: a common motif of higher order chromosome structure? | 3.9 | 65 | Citations (PDF) |
| 123 | Yeast one-hybrid assays for gene-centered human gene regulatory network mapping | 24.6 | 51 | Citations (PDF) |
| 124 | Integrating Structural and Functional Studies Leads to a New Model of β-Globin Activation That Suggests Distinct Initiation and Maintenance StatesBlood, 2011, 118, 349-349 | 4.2 | 0 | Citations (PDF) |
| 125 | Hi-C: A Method to Study the Three-dimensional Architecture of Genomes. | 0.3 | 359 | Citations (PDF) |
| 126 | Mediator and cohesin connect gene expression and chromatin architecture | 37.9 | 1,846 | Citations (PDF) |
| 127 | Genomics tools for unraveling chromosome architecture | 29.8 | 210 | Citations (PDF) |
| 128 | Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene | 15.5 | 101 | Citations (PDF) |
| 129 | Chemical genetic strategy identifies histone deacetylase 1 (HDAC1) and HDAC2 as therapeutic targets in sickle cell disease | 7.5 | 195 | Citations (PDF) |
| 130 | Sister Cohesion and Structural Axis Components Mediate Homolog Bias of Meiotic Recombination | 33.7 | 274 | Citations (PDF) |
| 131 | Disease-Causing 7.4 kb Cis-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the FOXL2 Promotor: Implications for Mutation Screening | 3.2 | 85 | Citations (PDF) |
| 132 | Gene dates, parties and galas | 5.2 | 3 | Citations (PDF) |
| 133 | My5C: web tools for chromosome conformation capture studies | 24.6 | 87 | Citations (PDF) |
| 134 | Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome | 36.2 | 8,581 | Citations (PDF) |
| 135 | Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery | 4.6 | 304 | Citations (PDF) |
| 136 | Yeast Silent Mating Type Loci Form Heterochromatic Clusters through Silencer Protein-Dependent Long-Range Interactions | 3.2 | 94 | Citations (PDF) |
| 137 | A mechanism for Ikaros regulation of human globin gene switching | 2.7 | 36 | Citations (PDF) |
| 138 | Mapping in Vivo Chromatin Interactions in Yeast Suggests an Extended Chromatin Fiber with Regional Variation in Compaction | 2.2 | 147 | Citations (PDF) |
| 139 | Chromosome Conformation Capture Carbon Copy Technology | 0.0 | 40 | Citations (PDF) |
| 140 | GC- and AT-rich chromatin domains differ in conformation and histone modification status and are differentially modulated by Rpd3p | 12.2 | 67 | Citations (PDF) |
| 141 | Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex | 16.3 | 277 | Citations (PDF) |
| 142 | Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project | 37.9 | 4,877 | Citations (PDF) |
| 143 | Ikaros Drives Human Haemoglobin Switching by Facilitating Active Chromatin Hub Formation.Blood, 2007, 110, 1772-1772 | 4.2 | 0 | Citations (PDF) |
| 144 | Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements | 4.6 | 1,110 | Citations (PDF) |
| 145 | The active FMR1 promoter is associated with a large domain of altered chromatin conformation with embedded local histone modifications | 7.5 | 52 | Citations (PDF) |
| 146 | Proximity among Distant Regulatory Elements at the β-Globin Locus Requires GATA-1 and FOG-1 | 13.3 | 467 | Citations (PDF) |
| 147 | A mechanical basis for chromosome function | 7.5 | 306 | Citations (PDF) |
| 148 | A closer look at long-range chromosomal interactions | 6.7 | 57 | Citations (PDF) |
| 149 | Progression of meiotic DNA replication is modulated by interchromosomal interaction proteins, negatively by Spo11p and positively by Rec8p | 4.6 | 215 | Citations (PDF) |
| 150 | ATP-independent DNA unwinding by the adenovirus single-stranded DNA binding protein requires a flexible DNA binding loop 1 1Edited by M. Yaniv | 4.1 | 23 | Citations (PDF) |
| 151 | Multimerization of the adenovirus DNA-binding protein is the driving force for ATP-independent DNA unwinding during strand displacement synthesis | 7.3 | 47 | Citations (PDF) |
| 152 | Linker histone H1.8 inhibits chromatin binding of condensins and DNA topoisomerase II to tune chromosome length and individualization | 1.6 | 44 | Citations (PDF) |
| 153 | Large domains of heterochromatin direct the formation of short mitotic chromosome loops | 1.6 | 12 | Citations (PDF) |
| 154 | Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus | 1.6 | 17 | Citations (PDF) |
| 155 | mRNA initiation and termination are spatially coordinated | 36.2 | 4 | Citations (PDF) |
| 156 | An integrated view of the structure and function of the human 4D nucleome | 37.9 | 2 | Citations (PDF) |
| 157 | Interphase chromosome conformation is specified by distinct folding programmes inherited through mitotic chromosomes or the cytoplasm | 16.3 | 3 | Citations (PDF) |