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277 PR articles • 100,675 PR citations • Sorted by year • Download PDF (PDF by citations)
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1Appendectomy and Long-term Colorectal Cancer Incidence, Overall and by Tumor Fusobacterium nucleatum Status
Annals of Surgery, 2025, 282, 319-327
4.67Citations (PDF)
2Response of the gut microbiome and metabolome to dietary fiber in healthy dogs
MSystems, 2025, 10,
4.43Citations (PDF)
3Profiling lateral gene transfer events in the human microbiome using WAAFLE
Nature Microbiology, 2025, 10, 94-111
16.013Citations (PDF)
4A Small-Molecule Inhibitor of Gut Bacterial Urease Protects the Host from Liver Injury
ACS Chemical Biology, 2025, 20, 48-55
3.73Citations (PDF)
5Virulence factor discovery identifies associations between the Fic gene family and Fap2 + fusobacteria in colorectal cancer microbiomes
MBio, 2025, 16,
4.46Citations (PDF)
6Early life microbial succession in the gut follows common patterns in humans across the globe
Nature Communications, 2025, 16,
13.719Citations (PDF)
7Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer
Nature Medicine, 2025, 31, 2416-2429
33.031Citations (PDF)
8Codevelopment of gut microbial metabolism and visual neural circuitry over human infancy
MBio, 2025, 16,
4.40Citations (PDF)
9Multi-omic analysis reveals transkingdom gut dysbiosis in metabolic dysfunction-associated steatotic liver disease
Nature Metabolism, 2025, 7, 1476-1492
17.16Citations (PDF)
10Dietary Patterns and Incident Chronic Constipation in Three Prospective Cohorts of Middle- and Older-Aged Adults
Gastroenterology, 2025, 169, 1475-1488
0.93Citations (PDF)
11Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease
Molecular Systems Biology, 2024, 20, 338-361
6.74Citations (PDF)
12A host–microbiota interactome reveals extensive transkingdom connectivity
Nature, 2024, 628, 171-179
37.942Citations (PDF)
13Gut microbiome and metabolome profiling in Framingham heart study reveals cholesterol-metabolizing bacteria
Cell, 2024, 187, 1834-1852.e19
33.7169Citations (PDF)
14Gut microbiome composition and metabolic activity in women with diverticulitis
Nature Communications, 2024, 15,
13.720Citations (PDF)
15Optimized model architectures for deep learning on genomic data
Communications Biology, 2024, 7,
4.43Citations (PDF)
16Elevated type-17 cytokines are present in axial spondyloarthritis stool
2024, 3,
0Citations (PDF)
17A metabolomics pipeline highlights microbial metabolism in bloodstream infections
Cell, 2024, 187, 4095-4112.e21
33.739Citations (PDF)
18Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes
Nature Medicine, 2024, 30, 2265-2276
33.070Citations (PDF)
19Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries
Cell, 2024, 187, 4554-4570.e18
33.763Citations (PDF)
20An Empirical Dietary Pattern Associated With the Gut Microbial Features in Relation to Colorectal Cancer Risk
Gastroenterology, 2024, 167, 1371-1383.e4
0.914Citations (PDF)
21Comprehensive profile of the companion animal gut microbiome integrating reference-based and reference-free methods
ISME Journal, 2024, 18,
9.110Citations (PDF)
22Metatranscriptomics-guided discovery and characterization of a polyphenol-metabolizing gut microbial enzyme
Cell Host and Microbe, 2024, 32, 1887-1896.e8
15.121Citations (PDF)
23F. prausnitzii potentially modulates the association between citrus intake and depression
Microbiome, 2024, 12,
11.511Citations (PDF)
24Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts
Nature Microbiology, 2024, 9, 3120-3134
16.048Citations (PDF)
25Integrated molecular approaches for fermented food microbiome research
FEMS Microbiology Reviews, 2023, 47,
10.637Citations (PDF)
26Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease
Nature Medicine, 2023, 29, 700-709
33.0127Citations (PDF)
27Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
Nature Biotechnology, 2023, 41, 1633-1644
29.81,017Citations (PDF)
28The gut microbiome modifies the associations of short- and long-term physical activity with body weight changes
Microbiome, 2023, 11,
11.522Citations (PDF)
29Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects
Cell Host and Microbe, 2023, 31, 1007-1020.e4
15.115Citations (PDF)
30RNA-based amplicon sequencing is ineffective in measuring metabolic activity in environmental microbial communities
Microbiome, 2023, 11,
11.543Citations (PDF)
31Metagenomics of the Gut Microbiome in Parkinson's Disease: Prodromal Changes
Annals of Neurology, 2023, 94, 486-501
6.645Citations (PDF)
32Metagenomic assessment of gut microbial communities and risk of severe COVID-19
Genome Medicine, 2023, 15,
9.621Citations (PDF)
33Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes
Science Translational Medicine, 2023, 15,
12.538Citations (PDF)
34Interplay between diet, circulating indolepropionate concentrations and cardiometabolic health in US populations
Gut, 2023, 72, 2260-2271
16.829Citations (PDF)
35BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures
Nature Biotechnology, 2023, 42, 790-802
29.815Citations (PDF)
36A two-cohort study on the association between the gut microbiota and bone density, microarchitecture, and strength
Frontiers in Endocrinology, 2023, 14,
3.922Citations (PDF)
37Association Between Bowel Movement Pattern and Cognitive Function
Neurology, 2023, 101,
1.016Citations (PDF)
38Diet and gut microbial associations in irritable bowel syndrome according to disease subtype
Gut Microbes, 2023, 15,
10.224Citations (PDF)
39Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children
Science Advances, 2023, 9,
10.920Citations (PDF)
40Interplay between diet and gut microbiome, and circulating concentrations of trimethylamine N-oxide: findings from a longitudinal cohort of US men
Gut, 2022, 71, 724-733
16.8116Citations (PDF)
41Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper
Bioinformatics, 2022, 38, 612-620
4.77Citations (PDF)
42The Gut Microbiome Modifies the Association Between a Mediterranean Diet and Diabetes in USA Hispanic/ Latino Population
Journal of Clinical Endocrinology and Metabolism, 2022, 107, e924-e934
4.124Citations (PDF)
43Analysis of the Associations Between the Human Fecal Microbiome and Bone Density, Structure, and Strength: The Osteoporotic Fractures in Men (MrOS) Cohort
Journal of Bone and Mineral Research, 2022, 37, 597-607
4.919Citations (PDF)
44Strain-level fitness in the gut microbiome is an emergent property of glycans and a single metabolite
Cell, 2022, 185, 513-529.e21
33.775Citations (PDF)
45Dietary lignans, plasma enterolactone levels, and metabolic risk in men: exploring the role of the gut microbiome
BMC Microbiology, 2022, 22,
3.832Citations (PDF)
46Human gut bacteria produce ΤΗ17-modulating bile acid metabolites
Nature, 2022, 603, 907-912
37.9489Citations (PDF)
47Association of midlife antibiotic use with subsequent cognitive function in women
PLoS ONE, 2022, 17, e0264649
2.323Citations (PDF)
48Strain Identification and Quantitative Analysis in Microbial Communities
Journal of Molecular Biology, 2022, 434, 167582
4.138Citations (PDF)
49Mucosal metabolites fuel the growth and virulence of E. coli linked to Crohn’s disease
JCI Insight, 2022, 7,
5.431Citations (PDF)
50Discovery of bioactive microbial gene products in inflammatory bowel disease
Nature, 2022, 606, 754-760
37.988Citations (PDF)
51Western-Style Diet, pks Island-Carrying Escherichia coli, and Colorectal Cancer: Analyses From Two Large Prospective Cohort Studies
Gastroenterology, 2022, 163, 862-874
0.986Citations (PDF)
52Histidine Intake, Human Gut Microbiome, Plasma Levels of Imidazole Propionate, and Coronary Heart Disease Risk in US Adults
Current Developments in Nutrition, 2022, 6, 1041
0.23Citations (PDF)
53A biosynthetic pathway for the selective sulfonation of steroidal metabolites by human gut bacteria
Nature Microbiology, 2022, 7, 1404-1418
16.077Citations (PDF)
54Progress and opportunities in microbial community metabolomics
Current Opinion in Microbiology, 2022, 70, 102195
7.025Citations (PDF)
55Microbiome epidemiology and association studies in human health
Nature Reviews Genetics, 2022, 24, 109-124
47.075Citations (PDF)
56Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin
Genome Biology, 2022, 23,
8.1118Citations (PDF)
57Effects of Lifetime Exposures to Environmental Contaminants on the Adult Gut Microbiome
Environmental Science & Technology, 2022, 56, 16985-16995
11.126Citations (PDF)
58Human threat learning is associated with gut microbiota composition
PNAS Nexus, 2022, 1,
3.16Citations (PDF)
59The human gut microbiota in people with amyotrophic lateral sclerosis
Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration, 2021, 22, 186-194
2.593Citations (PDF)
60A Phase 1b Safety Study of SER-287, a Spore-Based Microbiome Therapeutic, for Active Mild to Moderate Ulcerative Colitis
Gastroenterology, 2021, 160, 115-127.e30
0.995Citations (PDF)
61Microbiome Biomarkers: One Step Closer in NAFLD Cirrhosis
Hepatology, 2021, 73, 2063-2066
10.14Citations (PDF)
62Identification of Natural CRISPR Systems and Targets in the Human Microbiome
Cell Host and Microbe, 2021, 29, 94-106.e4
15.130Citations (PDF)
63Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach
Microbiome, 2021, 9,
11.578Citations (PDF)
64Association of Fusobacterium nucleatum with Specific T-cell Subsets in the Colorectal Carcinoma Microenvironment
Clinical Cancer Research, 2021, 27, 2816-2826
6.886Citations (PDF)
65The gut microbiome modulates the protective association between a Mediterranean diet and cardiometabolic disease risk
Nature Medicine, 2021, 27, 333-343
33.0324Citations (PDF)
66The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries
Genome Medicine, 2021, 13,
9.638Citations (PDF)
67Triclosan Tolerance Is Driven by a Conserved Mechanism in Diverse Pseudomonas Species
Applied and Environmental Microbiology, 2021, 87,
3.618Citations (PDF)
68Microbiome Analysis of More Than 2,000 NHS Bowel Cancer Screening Programme Samples Shows the Potential to Improve Screening Accuracy
Clinical Cancer Research, 2021, 27, 2246-2254
6.830Citations (PDF)
69A polymorphism in the promoter of FRAS1 is a candidate SNP associated with metastatic prostate cancer
Prostate, 2021, 81, 683-693
2.16Citations (PDF)
70Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men
Genome Medicine, 2021, 13,
9.6144Citations (PDF)
71Plant-Based Diet Index and Metabolic Risk in Men: Exploring the Role of the Gut Microbiome
Journal of Nutrition, 2021, 151, 2780-2789
2.940Citations (PDF)
72Statistical approaches for differential expression analysis in metatranscriptomics
Bioinformatics, 2021, 37, i34-i41
4.754Citations (PDF)
73Metatranscriptomics for the Human Microbiome and Microbial Community Functional Profiling
Annual Review of Biomedical Data Science, 2021, 4, 279-311
4.996Citations (PDF)
74The Sulfur Microbial Diet Is Associated With Increased Risk of Early-Onset Colorectal Cancer Precursors
Gastroenterology, 2021, 161, 1423-1432.e4
0.978Citations (PDF)
75The Sulfur Microbial Diet and Risk of Colorectal Cancer by Molecular Subtypes and Intratumoral Microbial Species in Adult Men
Clinical and Translational Gastroenterology, 2021, 12, e00338
2.716Citations (PDF)
76A statistical model for describing and simulating microbial community profiles
PLoS Computational Biology, 2021, 17, e1008913
3.159Citations (PDF)
77A bacterial bile acid metabolite modulates Treg activity through the nuclear hormone receptor NR4A1
Cell Host and Microbe, 2021, 29, 1366-1377.e9
15.1241Citations (PDF)
78Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
Nature Medicine, 2021, 27, 321-332
33.0821Citations (PDF)
79Of mice and men and women: Sexual dimorphism of the gut microbiome
International Journal of Women's Dermatology, 2021, 7, 533-538
0.930Citations (PDF)
80The oral microbiome in relation to pancreatic cancer risk in African Americans
British Journal of Cancer, 2021, 126, 287-296
5.524Citations (PDF)
81Association Between the Sulfur Microbial Diet and Risk of Colorectal Cancer
JAMA Network Open, 2021, 4, e2134308
6.657Citations (PDF)
82Multivariable association discovery in population-scale meta-omics studies
PLoS Computational Biology, 2021, 17, e1009442
3.11,914Citations (PDF)
83Reporting guidelines for human microbiome research: the STORMS checklist
Nature Medicine, 2021, 27, 1885-1892
33.0375Citations (PDF)
84Association of autophagy status with amount of <i>Fusobacterium nucleatum</i> in colorectal cancer
Journal of Pathology, 2020, 250, 397-408
4.934Citations (PDF)
85Strain-level epidemiology of microbial communities and the human microbiome
Genome Medicine, 2020, 12,
9.6126Citations (PDF)
86Determinants of Staphylococcus aureus carriage in the developing infant nasal microbiome
Genome Biology, 2020, 21,
8.124Citations (PDF)
87Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
Nature Communications, 2020, 11,
13.7704Citations (PDF)
88PICRUSt2 for prediction of metagenome functions
Nature Biotechnology, 2020, 38, 685-688
29.85,281Citations (PDF)
89The Gut Microbiome Modifies the Protective Effects of a Mediterranean Diet Against Cardiometabolic Disease Risk
Current Developments in Nutrition, 2020, 4, nzaa062_054
0.21Citations (PDF)
90Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
Genome Biology, 2020, 21,
8.1108Citations (PDF)
91Global chemical effects of the microbiome include new bile-acid conjugations
Nature, 2020, 579, 123-129
37.9530Citations (PDF)
92Mobilizable antibiotic resistance genes are present in dust microbial communities
PLoS Pathogens, 2020, 16, e1008211
4.441Citations (PDF)
93Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease
Nature Microbiology, 2020, 5, 486-497
16.094Citations (PDF)
94Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men
Gastroenterology, 2020, 158, 1313-1325
0.9139Citations (PDF)
95Structure of the Mucosal and Stool Microbiome in Lynch Syndrome
Cell Host and Microbe, 2020, 27, 585-600.e4
15.152Citations (PDF)
96Delivery Mode Affects Stability of Early Infant Gut Microbiota
Cell Reports Medicine, 2020, 1, 100156
6.6185Citations (PDF)
97Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis
Annals of Applied Statistics, 2020, 14,
1.211Citations (PDF)
98Establishing What Constitutes a Healthy Human Gut Microbiome: State of the Science, Regulatory Considerations, and Future Directions
Journal of Nutrition, 2019, 149, 1882-1895
2.9237Citations (PDF)
99Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition
Cell Host and Microbe, 2019, 26, 252-264.e10
15.1398Citations (PDF)
100Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences
Nature Communications, 2019, 10,
13.7250Citations (PDF)
101Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Nature Biotechnology, 2019, 37, 852-857
29.819,394Citations (PDF)
102The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations
Cell Host and Microbe, 2019, 26, 666-679.e7
15.1413Citations (PDF)
103The interleukin-33 receptor contributes to pulmonary responses to ozone in male mice: role of the microbiome
Respiratory Research, 2019, 20,
4.226Citations (PDF)
104OP19 Corticosteroid response rectal gene signature and associated microbial variation in treatment naïve ulcerative colitis
Journal of Crohn's and Colitis, 2019, 13, S013-S014
1.30Citations (PDF)
105Comparative genomics and genome biology of <i>Campylobacter showae</i>
Emerging Microbes and Infections, 2019, 8, 827-840
6.312Citations (PDF)
106Naturally acquired immunity against immature<i>Plasmodium falciparum</i>gametocytes
Science Translational Medicine, 2019, 11,
12.547Citations (PDF)
107Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Nature, 2019, 569, 655-662
37.92,646Citations (PDF)
108Microbiota Contribute to Obesity-related Increases in the Pulmonary Response to Ozone
American Journal of Respiratory Cell and Molecular Biology, 2019, 61, 702-712
3.844Citations (PDF)
109Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis
Cell Host and Microbe, 2019, 25, 668-680.e7
15.1451Citations (PDF)
110Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Nature Communications, 2019, 10,
13.7329Citations (PDF)
111Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response
Nature Communications, 2019, 10,
13.7319Citations (PDF)
112Low Tristetraprolin Expression Is Associated with Lethal Prostate Cancer
Cancer Epidemiology Biomarkers and Prevention, 2019, 28, 584-590
1.19Citations (PDF)
113Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Cell, 2019, 176, 649-662.e20
33.71,455Citations (PDF)
114HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor
American Journal of Epidemiology, 2019, 188, 1023-1026
3.339Citations (PDF)
115Sex Differences in Pulmonary Responses to Ozone in Mice. Role of the Microbiome
American Journal of Respiratory Cell and Molecular Biology, 2019, 60, 198-208
3.856Citations (PDF)
116bioBakery: a meta’omic analysis environment
Bioinformatics, 2018, 34, 1235-1237
4.7327Citations (PDF)
117Metatranscriptome of human faecal microbial communities in a cohort of adult men
Nature Microbiology, 2018, 3, 356-366
16.0223Citations (PDF)
118Stability of the human faecal microbiome in a cohort of adult men
Nature Microbiology, 2018, 3, 347-355
16.0274Citations (PDF)
119Dynamics of metatranscription in the inflammatory bowel disease gut microbiome
Nature Microbiology, 2018, 3, 337-346
16.0543Citations (PDF)
120Diets That Promote Colon Inflammation Associate With Risk of Colorectal Carcinomas That Contain Fusobacterium nucleatum
Clinical Gastroenterology and Hepatology, 2018, 16, 1622-1631.e3
6.0122Citations (PDF)
121The Microbiome Regulates Pulmonary Responses to Ozone in Mice
American Journal of Respiratory Cell and Molecular Biology, 2018, 59, 346-354
3.857Citations (PDF)
122Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease
Gut, 2018, 67, 108-119
16.8740Citations (PDF)
123The Role of Gut Microbiome in the Pathogenesis of Prostate Cancer: A Prospective, Pilot Study
Urology, 2018, 111, 122-128
1.4192Citations (PDF)
124Antimicrobial Chemicals Associate with Microbial Function and Antibiotic Resistance Indoors
MSystems, 2018, 3,
4.485Citations (PDF)
125Continuity of transcriptomes among colorectal cancer subtypes based on meta-analysis
Genome Biology, 2018, 19,
8.124Citations (PDF)
126The Amount of Bifidobacterium Genus in Colorectal Carcinoma Tissue in Relation to Tumor Characteristics and Clinical Outcome
American Journal of Pathology, 2018, 188, 2839-2852
3.472Citations (PDF)
127Compositional and Temporal Changes in the Gut Microbiome of Pediatric Ulcerative Colitis Patients Are Linked to Disease Course
Cell Host and Microbe, 2018, 24, 600-610.e4
15.1285Citations (PDF)
128Temporal development of the gut microbiome in early childhood from the TEDDY study
Nature, 2018, 562, 583-588
37.91,735Citations (PDF)
129The human gut microbiome in early-onset type 1 diabetes from the TEDDY study
Nature, 2018, 562, 589-594
37.9828Citations (PDF)
130Daylight exposure modulates bacterial communities associated with household dust
Microbiome, 2018, 6,
11.584Citations (PDF)
131Species-level functional profiling of metagenomes and metatranscriptomes
Nature Methods, 2018, 15, 962-968
24.61,489Citations (PDF)
132<i>Fusobacterium nucleatum</i> in Colorectal Cancer Relates to Immune Response Differentially by Tumor Microsatellite Instability Status
Cancer Immunology Research, 2018, 6, 1327-1336
4.2189Citations (PDF)
133American Gut: an Open Platform for Citizen Science Microbiome Research
MSystems, 2018, 3,
4.4789Citations (PDF)
134Plasmodium gametocytes display homing and vascular transmigration in the host bone marrow
Science Advances, 2018, 4,
10.988Citations (PDF)
135Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
Cell Host and Microbe, 2018, 24, 133-145.e5
15.11,145Citations (PDF)
136Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
Cell Host and Microbe, 2018, 24, 146-154.e4
15.1421Citations (PDF)
137Host genetic variation and its microbiome interactions within the Human Microbiome Project
Genome Medicine, 2018, 10,
9.6167Citations (PDF)
138Bone Marrow Is a Major Parasite Reservoir in Plasmodium vivax Infection
MBio, 2018, 9,
4.4168Citations (PDF)
139Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life
Nature Microbiology, 2018, 4, 470-479
16.0214Citations (PDF)
140Gut microbiome structure and metabolic activity in inflammatory bowel disease
Nature Microbiology, 2018, 4, 293-305
16.01,679Citations (PDF)
141Age-of-diagnosis dependent ileal immune intensification and reduced alpha-defensin in older versus younger pediatric Crohn Disease patients despite already established dysbiosis
Mucosal Immunology, 2018, 12, 491-502
7.032Citations (PDF)
142A screen of Crohn's disease-associated microbial metabolites identifies ascorbate as a novel metabolic inhibitor of activated human T cells
Mucosal Immunology, 2018, 12, 457-467
7.054Citations (PDF)
143Bifidobacterium Genus in Colorectal Carcinoma Tissue in relation to Tumor Characteristics and Patient Survival
FASEB Journal, 2018, 32,
0.60Citations (PDF)
144Proceedings of the third international molecular pathological epidemiology (MPE) meeting
Cancer Causes and Control, 2017, 28, 167-176
1.716Citations (PDF)
145Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study
Lancet, The, 2017, 389, 1710-1718
62.3605Citations (PDF)
146Microbial strain-level population structure and genetic diversity from metagenomes
Genome Research, 2017, 27, 626-638
4.6755Citations (PDF)
147A prominent glycyl radical enzyme in human gut microbiomes metabolizes trans -4-hydroxy- l -proline
Science, 2017, 355,
36.2145Citations (PDF)
148QseC inhibition as an antivirulence approach for colitis-associated bacteria
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114, 142-147
7.556Citations (PDF)
149Accessible, curated metagenomic data through ExperimentHub
Nature Methods, 2017, 14, 1023-1024
24.6468Citations (PDF)
150Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium
Nature Biotechnology, 2017, 35, 1077-1086
29.8504Citations (PDF)
151Strains, functions and dynamics in the expanded Human Microbiome Project
Nature, 2017, 550, 61-66
37.91,192Citations (PDF)
152Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in Mice
MSystems, 2017, 2,
4.427Citations (PDF)
153Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation
Cell Host and Microbe, 2017, 22, 25-37.e6
15.1782Citations (PDF)
154Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer
Scientific Reports, 2017, 7,
3.4119Citations (PDF)
155Association of Dietary Patterns With Risk of Colorectal Cancer Subtypes Classified by <i>Fusobacterium nucleatum</i> in Tumor Tissue
JAMA Oncology, 2017, 3, 921
14.4306Citations (PDF)
156Experimental design and quantitative analysis of microbial community multiomics
Genome Biology, 2017, 18,
8.1170Citations (PDF)
157A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients
Genome Medicine, 2017, 9,
9.6686Citations (PDF)
158Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems
Microbiome, 2017, 5,
11.5454Citations (PDF)
159A Bayesian method for detecting pairwise associations in compositional data
PLoS Computational Biology, 2017, 13, e1005852
3.143Citations (PDF)
160Paneth cell defects in Crohn’s disease patients promote dysbiosis
JCI Insight, 2016, 1,
5.4112Citations (PDF)
161Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment
MSystems, 2016, 1,
4.4131Citations (PDF)
162The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone
Applied and Environmental Microbiology, 2016, 82, 3572-3581
3.69Citations (PDF)
163Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans
Cell, 2016, 165, 842-853
33.71,182Citations (PDF)
164The healthy human microbiome
Genome Medicine, 2016, 8,
9.61,609Citations (PDF)
165Antimicrobial Chemicals Are Associated with Elevated Antibiotic Resistance Genes in the Indoor Dust Microbiome
Environmental Science &amp; Technology, 2016, 50, 9807-9815
11.1168Citations (PDF)
166CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types
Genome Biology, 2016, 17,
8.124Citations (PDF)
167Uncovering oral Neisseria tropism and persistence using metagenomic sequencing
Nature Microbiology, 2016, 1,
16.093Citations (PDF)
168Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability
Science Translational Medicine, 2016, 8,
12.5961Citations (PDF)
169Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location
Clinical and Translational Gastroenterology, 2016, 7, e200
2.7262Citations (PDF)
170Infected erythrocyte-derived extracellular vesicles alter vascular function via regulatory Ago2-miRNA complexes in malaria
Nature Communications, 2016, 7,
13.7238Citations (PDF)
171Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity
Cell, 2016, 167, 1125-1136.e8
33.71,013Citations (PDF)
172Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes
Genome Medicine, 2016, 8,
9.6266Citations (PDF)
173Intestinal microbiome analyses identify melanoma patients at risk for checkpoint-blockade-induced colitis
Nature Communications, 2016, 7,
13.7925Citations (PDF)
174Fecal Microbiome in Epidemiologic Studies—Letter
Cancer Epidemiology Biomarkers and Prevention, 2016, 25, 869-869
1.13Citations (PDF)
175Fusobacterium nucleatumin colorectal carcinoma tissue and patient prognosis
Gut, 2016, 65, 1973-1980
16.8946Citations (PDF)
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224Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis
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