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86 PR articles • 40,713 PR citations • Sorted by year • Download PDF (PDF by citations)
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1Simvastatin induces human gut bacterial cell surface genes
Molecular Microbiology, 2024, 122, 372-386
2.612Citations (PDF)
2Human gut Actinobacteria boost drug absorption by secreting P-glycoprotein ATPase inhibitors
IScience, 2024, 27, 110122
3.68Citations (PDF)
3Digesting the complex metabolic effects of diet on the host and microbiome
Cell, 2024, 187, 3857-3876
34.146Citations (PDF)
4A diet-dependent host metabolite shapes the gut microbiota to protect from autoimmunity
Cell Reports, 2024, 43, 114891
6.420Citations (PDF)
5Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta
PLoS Biology, 2023, 21, e3002125
5.033Citations (PDF)
6Variety of Fruit and Vegetables and Alcohol Intake are Associated with Gut Microbial Species and Gene Abundance in Colorectal Cancer Survivors
American Journal of Clinical Nutrition, 2023, 118, 518-529
4.912Citations (PDF)
7The global anaerobic metabolism regulator <i>fnr</i> is necessary for the degradation of food dyes and drugs by <i>Escherichia coli</i>
MBio, 2023, 14,
4.45Citations (PDF)
8Associations between the Gut Microbiota, Race, and Ethnicity of Patients with Colorectal Cancer: A Pilot and Feasibility Study
Cancers, 2023, 15, 4546
4.015Citations (PDF)
9Human gut bacterial metabolism drives Th17 activation and colitis
Cell Host and Microbe, 2022, 30, 17-30.e9
15.3213Citations (PDF)
10Microbial signals, MyD88, and lymphotoxin drive TNF-independent intestinal epithelial tissue damage
Journal of Clinical Investigation, 2022, 132,
10.729Citations (PDF)
11Synthetic glycans control gut microbiome structure and mitigate colitis in mice
Nature Communications, 2022, 13,
13.958Citations (PDF)
12Human gut bacteria produce ΤΗ17-modulating bile acid metabolites
Nature, 2022, 603, 907-912
38.7489Citations (PDF)
13Effects of caloric restriction on the gut microbiome are linked with immune senescence
Microbiome, 2022, 10,
11.592Citations (PDF)
14Fluoropyrimidine Bioactivation and Metabolism by the Gut Microbiome
FASEB Journal, 2022, 36,
0.71Citations (PDF)
15The tiny pharmacists within: How the microbiome impacts the treatment of human disease
FASEB Journal, 2022, 36,
0.70Citations (PDF)
16Host and gut bacteria share metabolic pathways for anti-cancer drug metabolism
Nature Microbiology, 2022, 7, 1605-1620
16.591Citations (PDF)
17Genetic manipulation of the human gut bacterium Eggerthella lenta reveals a widespread family of transcriptional regulators
Nature Communications, 2022, 13,
13.939Citations (PDF)
18The Pretreatment Gut Microbiome Is Associated With Lack of Response to Methotrexate in New‐Onset Rheumatoid Arthritis
Arthritis and Rheumatology, 2021, 73, 931-942
7.4130Citations (PDF)
19Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation
Cell Host and Microbe, 2021, 29, 362-377.e11
15.3120Citations (PDF)
20Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments
Cell Reports, 2021, 34, 108789
6.4142Citations (PDF)
21Dissecting the contribution of host genetics and the microbiome in complex behaviors
Cell, 2021, 184, 1740-1756.e16
34.1185Citations (PDF)
22Caloric restriction disrupts the microbiota and colonization resistance
Nature, 2021, 595, 272-277
38.7187Citations (PDF)
23Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome
Cell Reports, 2021, 37, 109930
6.4132Citations (PDF)
24Reporting guidelines for human microbiome research: the STORMS checklist
Nature Medicine, 2021, 27, 1885-1892
39.5375Citations (PDF)
25Deconstructing Mechanisms of Diet-Microbiome-Immune Interactions
Immunity, 2020, 53, 264-276
23.3130Citations (PDF)
26Gut microbiota–specific IgA <sup>+</sup> B cells traffic to the CNS in active multiple sclerosis
Science Immunology, 2020, 5,
13.5203Citations (PDF)
27A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria
Cell Host and Microbe, 2020, 27, 1001-1013.e9
15.360Citations (PDF)
28Bacterial metabolism rescues the inhibition of intestinal drug absorption by food and drug additives
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117, 16009-16018
7.654Citations (PDF)
29Non-catalytic ubiquitin binding by A20 prevents psoriatic arthritis–like disease and inflammation
Nature Immunology, 2020, 21, 422-433
24.270Citations (PDF)
30Pharmacomicrobiomics in inflammatory arthritis: gut microbiome as modulator of therapeutic response
Nature Reviews Rheumatology, 2020, 16, 282-292
27.8104Citations (PDF)
31Effects of underfeeding and oral vancomycin on gut microbiome and nutrient absorption in humans
Nature Medicine, 2020, 26, 589-598
39.5125Citations (PDF)
32Sensing Living Bacteria <i>in Vivo</i> Using <scp>d</scp>-Alanine-Derived <sup>11</sup>C Radiotracers
ACS Central Science, 2020, 6, 155-165
9.267Citations (PDF)
33Ketogenic Diets Alter the Gut Microbiome Resulting in Decreased Intestinal Th17 Cells
Cell, 2020, 181, 1263-1275.e16
34.1493Citations (PDF)
34A thermogenic fat-epithelium cell axis regulates intestinal disease tolerance
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117, 32029-32037
7.610Citations (PDF)
35Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet
Cell Host and Microbe, 2019, 26, 265-272.e4
15.3297Citations (PDF)
36Precision Medicine Goes Microscopic: Engineering the Microbiome to Improve Drug Outcomes
Cell Host and Microbe, 2019, 26, 22-34
15.3107Citations (PDF)
37Using DNA Metabarcoding To Evaluate the Plant Component of Human Diets: a Proof of Concept
MSystems, 2019, 4,
4.531Citations (PDF)
38CRISPR-Cas System of a Prevalent Human Gut Bacterium Reveals Hyper-targeting against Phages in a Human Virome Catalog
Cell Host and Microbe, 2019, 26, 325-335.e5
15.365Citations (PDF)
39Megaphages infect Prevotella and variants are widespread in gut microbiomes
Nature Microbiology, 2019, 4, 693-700
16.5197Citations (PDF)
40Discovery and inhibition of an interspecies gut bacterial pathway for Levodopa metabolism
Science, 2019, 364,
36.4633Citations (PDF)
41Nutrient Sensing in CD11c Cells Alters the Gut Microbiota to Regulate Food Intake and Body Mass
Cell Metabolism, 2019, 30, 364-373.e7
26.238Citations (PDF)
42Grape proanthocyanidin-induced intestinal bloom of Akkermansia muciniphila is dependent on its baseline abundance and precedes activation of host genes related to metabolic health
Journal of Nutritional Biochemistry, 2018, 56, 142-151
5.085Citations (PDF)
43Making Millennial Medicine More Meta
MSystems, 2018, 3,
4.52Citations (PDF)
44Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling
Microbiome, 2018, 6,
11.5226Citations (PDF)
45How to Determine the Role of the Microbiome in Drug Disposition
Drug Metabolism and Disposition, 2018, 46, 1588-1595
3.645Citations (PDF)
46A Metabolite-Triggered Tuft Cell-ILC2 Circuit Drives Small Intestinal Remodeling
Cell, 2018, 174, 271-284.e14
34.1451Citations (PDF)
47The Metabolism of Fluoropyrimidine Anticancer Drugs by the Human Gut Microbiome
FASEB Journal, 2018, 32,
0.71Citations (PDF)
48Regulation of drug metabolism and toxicity by multiple factors of genetics, epigenetics, lncRNAs, gut microbiota, and diseases: a meeting report of the 21st International Symposium on Microsomes and Drug Oxidations (MDO)
Acta Pharmaceutica Sinica B, 2017, 7, 241-248
12.826Citations (PDF)
49mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking
MSystems, 2016, 1,
4.5102Citations (PDF)
50The microbial pharmacists within us: a metagenomic view of xenobiotic metabolism
Nature Reviews Microbiology, 2016, 14, 273-287
85.9672Citations (PDF)
51Functional Characterization of Bacteria Isolated from Ancient Arctic Soil Exposes Diverse Resistance Mechanisms to Modern Antibiotics
PLoS ONE, 2015, 10, e0069533
2.4241Citations (PDF)
52Marked seasonal variation in the wild mouse gut microbiota
ISME Journal, 2015, 9, 2423-2434
9.1344Citations (PDF)
53Gut Microbial Succession Follows Acute Secretory Diarrhea in Humans
MBio, 2015, 6,
4.4178Citations (PDF)
54Dietary Polyphenols Promote Growth of the Gut Bacterium <i>Akkermansia muciniphila</i> and Attenuate High-Fat Diet–Induced Metabolic Syndrome
Diabetes, 2015, 64, 2847-2858
4.4611Citations (PDF)
55Characterization and Detection of a Widely Distributed Gene Cluster That Predicts Anaerobic Choline Utilization by Human Gut Bacteria
MBio, 2015, 6,
4.4216Citations (PDF)
56Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota
Cell Host and Microbe, 2015, 17, 72-84
15.31,064Citations (PDF)
57The Intestinal Metabolome: An Intersection Between Microbiota and Host
Gastroenterology, 2014, 146, 1470-1476
1.0309Citations (PDF)
58Host-microbial interactions in the metabolism of therapeutic and diet-derived xenobiotics
Journal of Clinical Investigation, 2014, 124, 4173-4181
10.7236Citations (PDF)
59Developing a metagenomic view of xenobiotic metabolism
Pharmacological Research, 2013, 69, 21-31
9.4181Citations (PDF)
60Quantifying the metabolic activities of human-associated microbial communities across multiple ecological scales
FEMS Microbiology Reviews, 2013, 37, 830-848
10.923Citations (PDF)
61Conserved Shifts in the Gut Microbiota Due to Gastric Bypass Reduce Host Weight and Adiposity
Science Translational Medicine, 2013, 5,
12.7893Citations (PDF)
62High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions
Nucleic Acids Research, 2013, 41, e205-e205
15.751Citations (PDF)
63Taking a metagenomic view of human nutrition
Current Opinion in Clinical Nutrition and Metabolic Care, 2012, 15, 448-454
3.254Citations (PDF)
64Is It Time for a Metagenomic Basis of Therapeutics?
Science, 2012, 336, 1253-1255
36.4131Citations (PDF)
65Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109, 594-599
7.6760Citations (PDF)
66Wild immunology: converging on the real world
Annals of the New York Academy of Sciences, 2011, 1236, 17-29
4.133Citations (PDF)
67Removing Noise From Pyrosequenced Amplicons
BMC Bioinformatics, 2011, 12,
3.01,443Citations (PDF)
68Detecting Novel Associations in Large Data Sets
Science, 2011, 334, 1518-1524
36.42,915Citations (PDF)
69Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans
American Journal of Clinical Nutrition, 2011, 94, 58-65
4.91,138Citations (PDF)
70The mind-body-microbial continuum
Dialogues in Clinical Neuroscience, 2011, 13, 55-62
5.6121Citations (PDF)
71Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes
Acta Crystallographica Section F: Structural Biology Communications, 2010, 66, 1261-1264
0.728Citations (PDF)
72Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
Proceedings of the National Academy of Sciences of the United States of America, 2010, 107, 7503-7508
7.6433Citations (PDF)
73Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106, 5859-5864
7.6679Citations (PDF)
74The core gut microbiome, energy balance and obesity
Journal of Physiology, 2009, 587, 4153-4158
3.4914Citations (PDF)
75The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice
Science Translational Medicine, 2009, 1,
12.72,733Citations (PDF)
76Host-bacterial coevolution and the search for new drug targets
Current Opinion in Chemical Biology, 2008, 12, 109-114
5.9105Citations (PDF)
77Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome
Cell Host and Microbe, 2008, 3, 213-223
15.32,785Citations (PDF)
78Human gut microbes associated with obesity
Nature, 2006, 444, 1022-1023
38.78,479Citations (PDF)
79An obesity-associated gut microbiome with increased capacity for energy harvest
Nature, 2006, 444, 1027-1031
38.711,436Citations (PDF)
80Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics
Genome Research, 2005, 15, 1145-1152
4.631Citations (PDF)
81Obesity alters gut microbial ecology
Proceedings of the National Academy of Sciences of the United States of America, 2005, 102, 11070-11075
7.65,756Citations (PDF)
82Discovery and characterization of a prevalent human gut bacterial enzyme sufficient for the inactivation of a family of plant toxins
ELife, 0, 7,
1.6123Citations (PDF)
83A widely distributed metalloenzyme class enables gut microbial metabolism of host- and diet-derived catechols
ELife, 0, 9,
1.666Citations (PDF)
84The East Asian gut microbiome is distinct from colocalized White subjects and connected to metabolic health
ELife, 0, 10,
1.645Citations (PDF)
85Mild SARS-CoV-2 infection results in long-lasting microbiota instability
MBio, 0, ,
4.424Citations (PDF)
86SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations
ELife, 0, 12,
1.619Citations (PDF)