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31 peer-reviewed articles • 38,142 peer-reviewed citations • Sorted by year • Download PDF (PDF by citations)
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1A Novel CRISPR Interference Effector Enabling Functional Gene Characterization with Synthetic Guide RNAs
CRISPR Journal, 2022, 5, 769-786
3.510Citations (PDF)
2The Power Decoder Simulator for the Evaluation of Pooled shRNA Screen Performance
SLAS Discovery, 2015, 20, 965-975
2.45Citations (PDF)
3Meta-analyses of studies of the human microbiota
Genome Research, 2013, 23, 1704-1714
4.6402Citations (PDF)
4Widespread Colonization of the Lung by Tropheryma whipplei in HIV Infection
American Journal of Respiratory and Critical Care Medicine, 2013, 187, 1110-1117
8.9202Citations (PDF)
5Comprehensive survey and geometric classification of base triples in RNA structures
Nucleic Acids Research, 2012, 40, 1407-1423
15.5109Citations (PDF)
6Lake microbial communities are resilient after a whole-ecosystem disturbance
ISME Journal, 2012, 6, 2153-2167
9.1228Citations (PDF)
7SitePainter: a tool for exploring biogeographical patterns
Bioinformatics, 2012, 28, 436-438
4.722Citations (PDF)
8RNASTAR: An RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs
Rna, 2012, 18, 1319-1327
3.836Citations (PDF)
9Microbiota Regulate Intestinal Absorption and Metabolism of Fatty Acids in the Zebrafish
Cell Host and Microbe, 2012, 12, 277-288
15.1899Citations (PDF)
10The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
GigaScience, 2012, 1,
3.2779Citations (PDF)
11Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
Current Protocols in Microbiology, 2012, 27,
0.0540Citations (PDF)
12Diversity, stability and resilience of the human gut microbiota
Nature, 2012, 489, 220-230
37.95,193Citations (PDF)
13Responses of Gut Microbiota to Diet Composition and Weight Loss in Lean and Obese Mice
Obesity, 2012, 20, 738-747
4.0382Citations (PDF)
14Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
Current Protocols in Bioinformatics, 2011, 36,
3.3568Citations (PDF)
15Moving pictures of the human microbiome
Genome Biology, 2011, 12,
8.11,054Citations (PDF)
16Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation
Trends in Microbiology, 2011, 19, 472-482
8.125Citations (PDF)
17Technology and Data-Intensive Science in the Beginning of the 21st Century
OMICS A Journal of Integrative Biology, 2011, 15, 203-207
1.65Citations (PDF)
18The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data
Applied Ontology, 2011, 6, 53-89
2.523Citations (PDF)
19Boulder ALignment Editor (ALE): a web-based RNA alignment tool
Bioinformatics, 2011, 27, 1706-1707
4.78Citations (PDF)
20Sharing and archiving nucleic acid structure mapping data
Rna, 2011, 17, 1204-1212
3.829Citations (PDF)
21TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata
Bioinformatics, 2011, 27, 3067-3069
4.715Citations (PDF)
22Microbial Biogeography of Public Restroom Surfaces
PLoS ONE, 2011, 6, e28132
2.3255Citations (PDF)
23QIIME allows analysis of high-throughput community sequencing data
Nature Methods, 2010, 7, 335-336
24.635,598Citations (PDF)
24The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data
Nature Precedings, 2009, ,
0.03Citations (PDF)
25Classification and energetics of the base-phosphate interactions in RNA
Nucleic Acids Research, 2009, 37, 4898-4918
15.5176Citations (PDF)
26The RNA structure alignment ontology
Rna, 2009, 15, 1623-1631
3.837Citations (PDF)
27Frequency and isostericity of RNA base pairs
Nucleic Acids Research, 2009, 37, 2294-2312
15.5206Citations (PDF)
28Tertiary structure and function of an RNA motif required for plant vascular entry to initiate systemic trafficking
EMBO Journal, 2007, 26, 3836-3846
7.3117Citations (PDF)
29FR3D: finding local and composite recurrent structural motifs in RNA 3D structures
Journal of Mathematical Biology, 2007, 56, 215-252
1.9269Citations (PDF)
30Computer identification of snoRNA genes using a Mammalian Orthologous Intron Database
Nucleic Acids Research, 2005, 33, 4578-4583
15.526Citations (PDF)
31The non-Watson-Crick base pairs and their associated isostericity matrices
Nucleic Acids Research, 2002, 30, 3497-3531
15.5745Citations (PDF)