| 1 | CoverM: read alignment statistics for metagenomics | 4.7 | 455 | Citations (PDF) |
| 2 | GenomeFISH: genome-based fluorescence
in situ
hybridization for strain-level visualization of microbial communities | 9.1 | 11 | Citations (PDF) |
| 3 | A genome-centric view of the role of the Acropora kenti microbiome in coral health and resilience | 13.7 | 15 | Citations (PDF) |
| 4 | Anaerobic oxidation of ammonium and short-chain gaseous alkanes coupled to nitrate reduction by a bacterial consortium | 9.1 | 10 | Citations (PDF) |
| 5 | Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle | 16.0 | 46 | Citations (PDF) |
| 6 | Isolation of a Methanobrevibacter gottschalkii strain from an Eastern Gray Kangaroo | 3.9 | 3 | Citations (PDF) |
| 7 | Anaerobic methanotroph ‘Candidatus Methanoperedens nitroreducens’ has a pleomorphic life cycle | 16.0 | 48 | Citations (PDF) |
| 8 | Isolation and characterisation of novel Methanocorpusculum species indicates the genus is ancestrally host-associated | 3.9 | 23 | Citations (PDF) |
| 9 | Phylogenetic and metabolic diversity of microbial communities performing anaerobic ammonium and methane oxidations under different nitrogen loadings | 5.4 | 64 | Citations (PDF) |
| 10 | CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning | 24.6 | 1,467 | Citations (PDF) |
| 11 | Multi-heme cytochrome-mediated extracellular electron transfer by the anaerobic methanotroph ‘Candidatus Methanoperedens nitroreducens’ | 13.7 | 60 | Citations (PDF) |
| 12 | Pyrogenic Carbon Promotes Anaerobic Oxidation of Methane Coupled with Iron Reduction via the Redox-Cycling Mechanism | 11.1 | 19 | Citations (PDF) |
| 13 | Coupling plant litter quantity to a novel metric for litter quality explains C storage changes in a thawing permafrost peatland | 11.1 | 26 | Citations (PDF) |
| 14 | Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea | 5.0 | 164 | Citations (PDF) |
| 15 | Chemotaxis shapes the microscale organization of the ocean’s microbiome | 37.9 | 140 | Citations (PDF) |
| 16 | Polyhydroxyalkanoate-driven current generation via acetate by an anaerobic methanotrophic consortium | 12.5 | 23 | Citations (PDF) |
| 17 | Expanding the phylogenetic distribution of cytochrome b-containing methanogenic archaea sheds light on the evolution of methanogenesis | 9.1 | 50 | Citations (PDF) |
| 18 | Chemotaxis may assist marine heterotrophic bacterial diazotrophs to find microzones suitable for N2 fixation in the pelagic ocean | 9.1 | 26 | Citations (PDF) |
| 19 | Anaerobic oxidation of propane coupled to nitrate reduction by a lineage within the class Symbiobacteriia | 13.7 | 39 | Citations (PDF) |
| 20 | Evidence for non‐methanogenic metabolisms in globally distributed archaeal clades basal to the
Methanomassiliicoccales | 3.7 | 30 | Citations (PDF) |
| 21 | Pregnant women who develop preeclampsia have lower abundance of the butyrate-producer Coprococcus in their gut microbiota | 1.5 | 89 | Citations (PDF) |
| 22 | Evaluation of the Microba Community Profiler for Taxonomic Profiling of Metagenomic Datasets From the Human Gut Microbiome | 3.9 | 49 | Citations (PDF) |
| 23 | Critical evaluation of faecal microbiome preservation using metagenomic analysis | 5.4 | 36 | Citations (PDF) |
| 24 | Methane-dependent selenate reduction by a bacterial consortium | 9.1 | 47 | Citations (PDF) |
| 25 | Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea | 9.1 | 44 | Citations (PDF) |
| 26 | Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes | 13.7 | 40 | Citations (PDF) |
| 27 | Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years | 11.5 | 83 | Citations (PDF) |
| 28 | Autism-related dietary preferences mediate autism-gut microbiome associationsCell, 2021, 184, 5916-5931.e17 | 33.6 | 318 | Citations (PDF) |
| 29 | Microvolume DNA extraction methods for microscale amplicon and metagenomic studies | 5.4 | 33 | Citations (PDF) |
| 30 | Accelerating microbial iron cycling promotes re‐cementation of surface crusts in iron ore regions | 4.9 | 12 | Citations (PDF) |
| 31 | Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family
Methanoperedenaceae | 4.4 | 81 | Citations (PDF) |
| 32 | Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae | 9.1 | 332 | Citations (PDF) |
| 33 | The importance of designating type material for uncultured taxa | 3.5 | 163 | Citations (PDF) |
| 34 | Insights into the ecological roles and evolution of methyl-coenzyme M reductase-containing hot spring Archaea | 13.7 | 153 | Citations (PDF) |
| 35 | A genomic view of the reef-building coral Porites lutea and its microbial symbionts | 16.0 | 251 | Citations (PDF) |
| 36 | An evolving view of methane metabolism in the Archaea | 83.4 | 571 | Citations (PDF) |
| 37 | Acetate Production from Anaerobic Oxidation of Methane via Intracellular Storage Compounds | 11.1 | 82 | Citations (PDF) |
| 38 | Biochar-Mediated Anaerobic Oxidation of Methane | 11.1 | 159 | Citations (PDF) |
| 39 | Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production | 1.6 | 18 | Citations (PDF) |
| 40 | Goethite Reduction by a Neutrophilic Member of the Alphaproteobacterial Genus Telmatospirillum | 3.9 | 37 | Citations (PDF) |
| 41 | Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi | 9.1 | 89 | Citations (PDF) |
| 42 | The effect of methane and odd-chain fatty acids on 3-hydroxybutyrate (3HB) and 3-hydroxyvalerate (3HV) synthesis by a Methylosinus-dominated mixed culture | 4.6 | 30 | Citations (PDF) |
| 43 | Biogenic Methane Cycling in a Laboratory Model of an Abandoned Bituminous Coal Mine | 2.5 | 3 | Citations (PDF) |
| 44 | A methanotrophic archaeon couples anaerobic oxidation of methane to Fe(III) reduction | 9.1 | 398 | Citations (PDF) |
| 45 | GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes | 15.5 | 178 | Citations (PDF) |
| 46 | Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing | 4.4 | 284 | Citations (PDF) |
| 47 | Methanotrophy across a natural permafrost thaw environment | 9.1 | 148 | Citations (PDF) |
| 48 | Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size | 9.1 | 38 | Citations (PDF) |
| 49 | Genome-centric view of carbon processing in thawing permafrost | 37.9 | 493 | Citations (PDF) |
| 50 | Host-linked soil viral ecology along a permafrost thaw gradient | 16.0 | 623 | Citations (PDF) |
| 51 | A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.) | 9.1 | 201 | Citations (PDF) |
| 52 | The effect of bituminous coal on methanogenic mixed cultures and pure cultures of Methanococcus and Methanosarcina | 7.4 | 10 | Citations (PDF) |
| 53 | Comparison of microbial communities across sections of a corroding sewer pipe and the effects of wastewater flooding | 2.0 | 33 | Citations (PDF) |
| 54 | Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life | 16.0 | 1,929 | Citations (PDF) |
| 55 | Characterization of a highly efficient antibiotic-degrading metallo-β-lactamase obtained from an uncultured member of a permafrost community | 2.5 | 22 | Citations (PDF) |
| 56 | Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea | 4.4 | 74 | Citations (PDF) |
| 57 | Adding stable carbon isotopes improves model representation of the role of microbial communities in peatland methane cycling | 3.9 | 30 | Citations (PDF) |
| 58 | A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities | 16.0 | 78 | Citations (PDF) |
| 59 | A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres | 3.9 | 145 | Citations (PDF) |
| 60 | Genome-Centric Analysis of Microbial Populations Enriched by Hydraulic Fracture Fluid Additives in a Coal Bed Methane Production Well | 3.9 | 76 | Citations (PDF) |
| 61 | The Opportunity for High-Performance Biomaterials from Methane | 3.8 | 117 | Citations (PDF) |
| 62 | Genome‐centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion | 3.7 | 152 | Citations (PDF) |
| 63 | Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomes | 3.4 | 72 | Citations (PDF) |
| 64 | Metagenomic and metaproteomic analyses of Accumulibacter phosphatis‐enriched floccular and granular biofilm | 3.7 | 53 | Citations (PDF) |
| 65 | Phylogenomic analysis of
Candidatus
‘Izimaplasma’ species: free-living representatives from a
Tenericutes
clade found in methane seeps | 9.1 | 95 | Citations (PDF) |
| 66 | OrfM: a fast open reading frame predictor for metagenomic data | 4.7 | 46 | Citations (PDF) |
| 67 | pH and Organic Carbon Dose Rates Control Microbially Driven Bioremediation Efficacy in Alkaline Bauxite Residue | 11.1 | 63 | Citations (PDF) |
| 68 | Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota | 16.0 | 551 | Citations (PDF) |
| 69 | The influence of hydrogeological disturbance and mining on coal seam microbial communities | 3.3 | 30 | Citations (PDF) |
| 70 | The effect of coal rank on biogenic methane potential and microbial composition | 5.5 | 82 | Citations (PDF) |
| 71 | Do You Kiss Your Mother with That Mouth? An Authentic Large-Scale Undergraduate Research Experience in Mapping the Human Oral Microbiome | 1.5 | 32 | Citations (PDF) |
| 72 | Archaeal and bacterial communities across a chronosequence of drained lake basins in arctic alaska | 3.4 | 18 | Citations (PDF) |
| 73 | Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix | 9.1 | 191 | Citations (PDF) |
| 74 | Chemotaxis by natural populations of coral reef bacteria | 9.1 | 82 | Citations (PDF) |
| 75 | A laboratory investigation of interactions between denitrifying anaerobic methane oxidation (DAMO) and anammox processes in anoxic environments | 3.4 | 80 | Citations (PDF) |
| 76 | CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes | 4.6 | 12,762 | Citations (PDF) |
| 77 | Selective Enrichment Establishes a Stable Performing Community for Microbial Electrosynthesis of Acetate from CO2 | 11.1 | 295 | Citations (PDF) |
| 78 | Expanding our view of genomic diversity in
C
andidatus
A
ccumulibacter clades | 3.7 | 116 | Citations (PDF) |
| 79 | Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters | 3.4 | 124 | Citations (PDF) |
| 80 | Effects of nitrate dosing on sulfidogenic and methanogenic activities in sewer sediment | 12.5 | 71 | Citations (PDF) |
| 81 | Temporal changes in microbial community composition during culture enrichment experiments with Indonesian coals | 5.5 | 52 | Citations (PDF) |
| 82 | An Expanded Genomic Representation of the Phylum Cyanobacteria | 2.4 | 361 | Citations (PDF) |
| 83 | The Bio-Community Perl toolkit for microbial ecology | 4.7 | 17 | Citations (PDF) |
| 84 | Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters | 9.1 | 391 | Citations (PDF) |
| 85 | Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques | 6.8 | 354 | Citations (PDF) |
| 86 | STAMP: statistical analysis of taxonomic and functional profiles | 4.7 | 4,416 | Citations (PDF) |
| 87 | Methane dynamics regulated by microbial community response to permafrost thaw | 37.9 | 401 | Citations (PDF) |
| 88 | Discovery of a novel methanogen prevalent in thawing permafrost | 13.7 | 198 | Citations (PDF) |
| 89 | CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction | 11.5 | 271 | Citations (PDF) |
| 90 | Biomass retention on electrodes rather than electrical current enhances stability in anaerobic digestion | 12.5 | 151 | Citations (PDF) |
| 91 | Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage | 37.9 | 1,303 | Citations (PDF) |
| 92 | Sequencing platform and library preparation choices impact viral metagenomes | 3.2 | 98 | Citations (PDF) |
| 93 | Drivers of microbial community composition in mesophilic and thermophilic temperature-phased anaerobic digestion pre-treatment reactors | 12.5 | 120 | Citations (PDF) |
| 94 | Diverse populations of lake water bacteria exhibit chemotaxis towards inorganic nutrients | 9.1 | 56 | Citations (PDF) |
| 95 | Dynamics of Cathode-Associated Microbial Communities and Metabolite Profiles in a Glycerol-Fed Bioelectrochemical System | 3.6 | 72 | Citations (PDF) |
| 96 | Spatial uniformity of microbial diversity in a continuous bioelectrochemical system | 9.7 | 36 | Citations (PDF) |
| 97 | Coral reef invertebrate microbiomes correlate with the presence of photosymbionts | 9.1 | 172 | Citations (PDF) |
| 98 | Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes | 29.8 | 1,303 | Citations (PDF) |
| 99 | Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data | 3.1 | 288 | Citations (PDF) |
| 100 | Crass: identification and reconstruction of CRISPR from unassembled metagenomic data | 15.5 | 185 | Citations (PDF) |
| 101 | Future reef decalcification under a business-as-usual CO
2
emission scenario | 7.5 | 165 | Citations (PDF) |
| 102 | Activation of the Jasmonic Acid Plant Defence Pathway Alters the Composition of Rhizosphere Bacterial Communities | 2.3 | 203 | Citations (PDF) |
| 103 | Grinder: a versatile amplicon and shotgun sequence simulator | 15.5 | 198 | Citations (PDF) |
| 104 | Application of metatranscriptomics to soil environments | 1.7 | 172 | Citations (PDF) |
| 105 | Fast, accurate error-correction of amplicon pyrosequences using Acacia | 24.6 | 330 | Citations (PDF) |
| 106 | Des communautés de phages divergentes contrôlent-elles la microflore intestinale ? | 0.2 | 0 | Citations (PDF) |
| 107 | Phage Encoded H-NS: A Potential Achilles Heel in the Bacterial Defence System | 2.3 | 61 | Citations (PDF) |
| 108 | Fixation-free fluorescence
in situ
hybridization for targeted enrichment of microbial populations | 9.1 | 78 | Citations (PDF) |
| 109 | Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses | 3.7 | 187 | Citations (PDF) |
| 110 | Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean | 9.1 | 247 | Citations (PDF) |
| 111 | Insights into the Diversity of Eukaryotes in Acid Mine Drainage Biofilm Communities | 3.6 | 111 | Citations (PDF) |
| 112 | Metatranscriptomics reveals unique microbial small RNAs in the ocean’s water column | 37.9 | 258 | Citations (PDF) |
| 113 | Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses | 3.7 | 316 | Citations (PDF) |
| 114 | Microbial community gene expression in ocean surface waters | 7.5 | 725 | Citations (PDF) |
| 115 | Genome dynamics in a natural archaeal population | 7.5 | 126 | Citations (PDF) |
| 116 | Genetic Exchange Across a Species Boundary in the Archaeal Genus Ferroplasma | 4.2 | 70 | Citations (PDF) |
| 117 | Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria | 37.9 | 212 | Citations (PDF) |
| 118 | The Search for a Molecular-Level Understanding of the Processes that Underpin the Earth's Biogeochemical Cycles | 5.6 | 13 | Citations (PDF) |
| 119 | Genome-Directed Isolation of the Key Nitrogen Fixer
Leptospirillum ferrodiazotrophum
sp. nov. from an Acidophilic Microbial Community | 3.6 | 243 | Citations (PDF) |
| 120 | Cultivating the uncultivated: a community genomics perspective | 8.1 | 98 | Citations (PDF) |
| 121 | Community structure and metabolism through reconstruction of microbial genomes from the environment | 37.9 | 2,247 | Citations (PDF) |
| 122 | Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal c cThe EMBL accession numbers for the sequences reported in this paper are X84472 (strain SBR1029 16S rDNA), X84474 (strain SBR1031 16S rDNA), X84498 (strain SBR1064 16S rDNA), X84565 (strain SBR2022 16S rDNA), X84576 (strain SBR2037 16S rDNA) and X84607 (strain SBR2076 16S rDNA). | 2.9 | 278 | Citations (PDF) |
| 123 | Investigation of Candidate Division TM7, a Recently Recognized Major Lineage of the Domain
Bacteria
with No Known Pure-Culture Representatives | 3.6 | 335 | Citations (PDF) |
| 124 | GroopM: an automated tool for the recovery of population genomes from related metagenomes | 0.0 | 290 | Citations (PDF) |
| 125 | Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events | 0.0 | 65 | Citations (PDF) |
| 126 | Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon | 0.0 | 8 | Citations (PDF) |
| 127 | Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics | 0.0 | 86 | Citations (PDF) |
| 128 | Title is missing! 0 | | 40 | Citations (PDF) |
| 129 | First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking | 0.0 | 157 | Citations (PDF) |
| 130 | Back from the dead; the curious tale of the predatory cyanobacterium
Vampirovibrio chlorellavorus | 0.0 | 130 | Citations (PDF) |
| 131 | Comprehensive taxonomic identification of microbial species in metagenomic data using SingleM and Sandpiper | 29.8 | 98 | Citations (PDF) |
| 132 | Potential for aerobic hydrocarbon oxidation in archaea | 13.7 | 3 | Citations (PDF) |
| 133 | Bin Chicken: targeted metagenomic coassembly for the efficient recovery of novel genomes | 24.6 | 6 | Citations (PDF) |
| 134 | Gut microbiota is different before the development of preeclampsia | 1.5 | 0 | Citations (PDF) |
| 135 | Carbon monoxide metabolism in freshwater anaerobic methanotrophic archaea | 13.7 | 3 | Citations (PDF) |
