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275 papers • 90,638 citations • Sorted by year • Download PDF (PDF by citations)
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1Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs14.228Citations (PDF)
2Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes7.517Citations (PDF)
3Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment
Nature Plants, 2024, 10, 240-255
11.836Citations (PDF)
4The complex polyploid genome architecture of sugarcane
Nature, 2024, 628, 804-810
34.3122Citations (PDF)
5Genome resources for three modern cotton lines guide future breeding efforts
Nature Plants, 2024, 10, 1039-1051
11.822Citations (PDF)
6Relics of interspecific hybridization retained in the genome of a drought-adapted peanut cultivar2.01Citations (PDF)
7Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean
Plant Journal, 2024, 120, 1221-1235
6.118Citations (PDF)
8Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses4.614Citations (PDF)
9Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid<i>Brachypodium</i>
Genetics, 2023, 223,
4.222Citations (PDF)
10High‐throughput identification of novel heat tolerance genes via genome‐wide pooled mutant screens in the model green alga <i>Chlamydomonas reinhardtii</i>
Plant, Cell and Environment, 2023, 46, 865-888
6.45Citations (PDF)
11<i>Agave REVEILLE1</i>regulates the onset and release of seasonal dormancy in<i>Populus</i>
Plant Physiology, 2023, 191, 1492-1504
5.413Citations (PDF)
12The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type <i>plus</i> and <i>minus</i> strains reveal extensive structural mutation in the laboratory
Plant Cell, 2023, 35, 644-672
7.693Citations (PDF)
13Genomic prediction of switchgrass winter survivorship across diverse lowland populations2.03Citations (PDF)
14Transcriptome and DNA methylome divergence of inflorescence development between 2 ecotypes in <i>Panicum hallii</i>
Plant Physiology, 2023, 192, 2374-2393
5.43Citations (PDF)
15Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics
Nature Plants, 2023, 9, 238-254
11.874Citations (PDF)
16Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet14.247Citations (PDF)
17Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina)
Nature Plants, 2023, 9, 1207-1220
11.826Citations (PDF)
18Divergent selection and climate adaptation fuel genomic differentiation between sister species of <i>Sphagnum</i> (peat moss)
Annals of Botany, 2023, 132, 499-512
3.17Citations (PDF)
19Predicted structural proteome of <i>Sphagnum divinum</i> and proteome-scale annotation
Bioinformatics, 2023, 39,
5.03Citations (PDF)
20Haplotype‐resolved genome assembly of <i>Populus tremula</i> × <i>P. alba</i> reveals aspen‐specific megabase satellite DNA
Plant Journal, 2023, 116, 1003-1017
6.124Citations (PDF)
21JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
Nucleic Acids Research, 2023, 51, 8383-8401
16.357Citations (PDF)
22Evolutionary Analyses of Gene Expression Divergence in <i>Panicum hallii</i>: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants4.76Citations (PDF)
23Parallel tuning of semi‐dwarfism via differential splicing of <i>Brachytic1</i> in commercial maize and smallholder sorghum
New Phytologist, 2023, 240, 1930-1943
8.13Citations (PDF)
24The reference genome and abiotic stress responses of the model perennial grass <i>Brachypodium sylvaticum</i>2.02Citations (PDF)
25The reference genome and abiotic stress responses of the model perennial grass <i>Brachypodium sylvaticum</i>2.04Citations (PDF)
26Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA
Plant Physiology, 2022, 189, 516-526
5.435Citations (PDF)
27The Common Bean V Gene Encodes Flavonoid 3′5′ Hydroxylase: A Major Mutational Target for Flavonoid Diversity in Angiosperms4.223Citations (PDF)
28Habitat‐adapted microbial communities mediate <i>Sphagnum</i> peatmoss resilience to warming
New Phytologist, 2022, 234, 2111-2125
8.149Citations (PDF)
29Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition
Nature Plants, 2022, 8, 233-244
11.881Citations (PDF)
30A generalist–specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range7.519Citations (PDF)
31The recent evolutionary rescue of a staple crop depended on over half a century of global germplasm exchange
Science Advances, 2022, 8,
11.525Citations (PDF)
32Representing sex chromosomes in genome assemblies
Cell Genomics, 2022, 2, 100132
6.331Citations (PDF)
33The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom <i>Schizophyllum commune</i>
MBio, 2022, 13,
4.534Citations (PDF)
34Re-evaluating the Systematics of Dendrolycopodium Using Restriction-Site Associated DNA-Sequencing4.24Citations (PDF)
35Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants
Journal of Plant Physiology, 2022, 277, 153791
3.95Citations (PDF)
36Author response: GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
2022, ,
2Citations (PDF)
37Dynamic genome evolution in a model fern
Nature Plants, 2022, 8, 1038-1051
11.8169Citations (PDF)
38Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass14.233Citations (PDF)
39Soybean (<i>Glycine max</i>) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics
Plant Biotechnology Journal, 2021, 19, 324-334
8.972Citations (PDF)
40Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
Nature, 2021, 590, 438-444
34.3218Citations (PDF)
41Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, Yucca gloriosa (Asparagaceae)4.212Citations (PDF)
42Widespread polycistronic gene expression in green algae7.547Citations (PDF)
43Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
Molecular Biology and Evolution, 2021, 38, 2750-2766
4.7116Citations (PDF)
44Long-read sequence assembly: a technical evaluation in barley
Plant Cell, 2021, 33, 1888-1906
7.6337Citations (PDF)
45Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
F1000Research, 2021, 10, 289
0.648Citations (PDF)
46The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
Genome Research, 2021, 31, 799-810
4.730Citations (PDF)
47The tepary bean genome provides insight into evolution and domestication under heat stress14.271Citations (PDF)
48Pests, diseases, and aridity have shaped the genome of Corymbia citriodora4.629Citations (PDF)
49Gene-rich UV sex chromosomes harbor conserved regulators of sexual development
Science Advances, 2021, 7,
11.596Citations (PDF)
50Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping
Plant Genome, 2021, 14,
3.539Citations (PDF)
51Genomic variation within the maize stiff‐stalk heterotic germplasm pool
Plant Genome, 2021, 14,
3.522Citations (PDF)
52Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding14.287Citations (PDF)
53Plant single-cell solutions for energy and the environment4.641Citations (PDF)
54Comparative Transcriptomics of Non-Embryogenic and Embryogenic Callus in Semi-Recalcitrant and Non-Recalcitrant Upland Cotton Lines
Plants, 2021, 10, 1775
3.817Citations (PDF)
55Integrative genomics reveals paths to sex dimorphism in <i>Salix purpurea</i> L7.214Citations (PDF)
56The Ancient Salicoid Genome Duplication Event: A Platform for Reconstruction of De Novo Gene Evolution in<i>Populus trichocarpa</i>2.520Citations (PDF)
57Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism
ISME Journal, 2021, 16, 1074-1085
9.252Citations (PDF)
58Title is missing!
2021
1Citations (PDF)
59Overexpression of a <i>Prefoldin β</i> subunit gene reduces biomass recalcitrance in the bioenergy crop <i>Populus</i>
Plant Biotechnology Journal, 2020, 18, 859-871
8.919Citations (PDF)
60Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP‐TF and determination of its transcriptional effect
Plant Direct, 2020, 4,
2.44Citations (PDF)
61PEATmoss (<i>Physcomitrella</i> Expression Atlas Tool): a unified gene expression atlas for the model plant <i>Physcomitrella patens</i>
Plant Journal, 2020, 102, 165-177
6.1101Citations (PDF)
62A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
Genome Biology, 2020, 21,
8.1116Citations (PDF)
63A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci
Nature Biotechnology, 2020, 38, 1203-1210
25.8154Citations (PDF)
64Assembly of the threespine stickleback Y chromosome reveals convergent signatures of sex chromosome evolution
Genome Biology, 2020, 21,
8.1143Citations (PDF)
65Genomic adaptations of the green alga Dunaliella salina to life under high salinity
Algal Research, 2020, 50, 101990
4.738Citations (PDF)
66The barley pan-genome reveals the hidden legacy of mutation breeding
Nature, 2020, 588, 284-289
34.3480Citations (PDF)
67Genome‐wide quantitative trait loci detection for biofuel traits in switchgrass (<i>Panicum virgatum</i> L.)
GCB Bioenergy, 2020, 12, 923-940
4.37Citations (PDF)
68Sequencing and Analysis of the Sex Determination Region of Populus trichocarpa
Genes, 2020, 11, 843
2.726Citations (PDF)
69Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors14.2100Citations (PDF)
70Arabidopsis C‐terminal binding protein ANGUSTIFOLIA modulates transcriptional co‐regulation of <i>MYB46</i> and <i>WRKY33</i>
New Phytologist, 2020, 228, 1627-1639
8.129Citations (PDF)
71Genome biology of the paleotetraploid perennial biomass crop Miscanthus14.294Citations (PDF)
72Environmentally responsive QTL controlling surface wax load in switchgrass
Theoretical and Applied Genetics, 2020, 133, 3119-3137
3.712Citations (PDF)
73Chloroplast genome sequences of Carya illinoinensis from two distinct geographic populations1.410Citations (PDF)
74Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism
GigaScience, 2020, 9,
3.419Citations (PDF)
75Genome Sequence of the Chestnut Blight Fungus <i>Cryphonectria parasitica</i> EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen
Phytopathology, 2020, 110, 1180-1188
3.350Citations (PDF)
76Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas914.2294Citations (PDF)
77Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway2.951Citations (PDF)
78A willow sex chromosome reveals convergent evolution of complex palindromic repeats
Genome Biology, 2020, 21,
8.1112Citations (PDF)
79Optimizing genomic selection for blight resistance in American chestnut backcross populations: A trade‐off with American chestnut ancestry implies resistance is polygenic
Evolutionary Applications, 2020, 13, 31-47
3.370Citations (PDF)
80Deeply conserved synteny resolves early events in vertebrate evolution10.7365Citations (PDF)
81Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement
Nature Genetics, 2020, 52, 525-533
26.1383Citations (PDF)
82Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean
Genetics, 2020, 215, 267-284
4.237Citations (PDF)
83Construction and comparison of three reference‐quality genome assemblies for soybean
Plant Journal, 2019, 100, 1066-1082
6.1193Citations (PDF)
84Mediation of plant–mycorrhizal interaction by a lectin receptor-like kinase
Nature Plants, 2019, 5, 676-680
11.857Citations (PDF)
85SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
Plant Direct, 2019, 3,
2.422Citations (PDF)
86High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome3.723Citations (PDF)
87Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence4.221Citations (PDF)
88Overexpression of a serine hydroxymethyltransferase increases biomass production and reduces recalcitrance in the bioenergy crop <i>Populus</i>4.036Citations (PDF)
89High‐density linkage map reveals QTL underlying growth traits in AP13×VS16 biparental population of switchgrass
GCB Bioenergy, 2019, 11, 672-690
4.314Citations (PDF)
90Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation2.415Citations (PDF)
91Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta
Genome Biology, 2019, 20,
8.143Citations (PDF)
92Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium)
Theoretical and Applied Genetics, 2019, 132, 2325-2351
3.734Citations (PDF)
93A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
BMC Genomics, 2019, 20,
3.3110Citations (PDF)
94Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships2.425Citations (PDF)
95QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient7.598Citations (PDF)
96The genome sequence of segmental allotetraploid peanut Arachis hypogaea
Nature Genetics, 2019, 51, 877-884
26.1610Citations (PDF)
97The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass4.228Citations (PDF)
98A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis
Developmental Biology, 2019, 452, 8-20
1.958Citations (PDF)
99The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes
BMC Genomics, 2019, 20,
3.377Citations (PDF)
100Genome sequence of the model rice variety KitaakeX
BMC Genomics, 2019, 20,
3.385Citations (PDF)
101Enhancing micro<scp>RNA</scp>167A expression in seed decreases the α‐linolenic acid content and increases seed size in <i>Camelina sativa</i>
Plant Journal, 2019, 98, 346-358
6.152Citations (PDF)
102The <i>Physcomitrella patens</i> gene atlas project: large‐scale <scp>RNA</scp>‐seq based expression data
Plant Journal, 2018, 95, 168-182
6.1141Citations (PDF)
103Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis
Gene, 2018, 663, 165-177
2.416Citations (PDF)
104Amplification and adaptation of centromeric repeats in polyploid switchgrass species
New Phytologist, 2018, 218, 1645-1657
8.140Citations (PDF)
105Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
Nature Genetics, 2018, 50, 285-296
26.1518Citations (PDF)
106Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii7.012Citations (PDF)
107Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus
Heredity, 2018, 121, 87-104
3.219Citations (PDF)
108The Sphagnome Project: enabling ecological and evolutionary insights through a genus‐level sequencing project
New Phytologist, 2018, 217, 16-25
8.162Citations (PDF)
109The <i>Physcomitrella patens</i> chromosome‐scale assembly reveals moss genome structure and evolution
Plant Journal, 2018, 93, 515-533
6.1517Citations (PDF)
110The <i>Sorghum bicolor</i> reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
Plant Journal, 2018, 93, 338-354
6.1597Citations (PDF)
111Hardwood Tree Genomics: Unlocking Woody Plant Biology4.259Citations (PDF)
112The genomic landscape of molecular responses to natural drought stress in Panicum hallii14.2140Citations (PDF)
113Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)
BMC Genomics, 2018, 19,
3.313Citations (PDF)
114Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant–pathogen interactions in a tree7.578Citations (PDF)
115Extensive Genetic Diversity is Present within North American Switchgrass Germplasm
Plant Genome, 2018, 11,
3.539Citations (PDF)
116A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a <i>Populus</i> ANGUSTIFOLIA Protein
G3: Genes, Genomes, Genetics, 2018, 8, 2631-2641
2.011Citations (PDF)
117Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing7.032Citations (PDF)
118Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery2.337Citations (PDF)
119Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes
Genes, 2018, 9, 185
2.732Citations (PDF)
120A mosaic monoploid reference sequence for the highly complex genome of sugarcane14.2373Citations (PDF)
121<scp>Genome‐wide association studies</scp> and expression‐based quantitative trait loci analyses reveal roles of <scp>HCT</scp>2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in <i>Populus</i>
New Phytologist, 2018, 220, 502-516
8.1146Citations (PDF)
122Characterization of a large sex determination region in Salix purpurea L. (Salicaceae)
Molecular Genetics and Genomics, 2018, 293, 1437-1452
2.072Citations (PDF)
123A 5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in <i>Populus</i>
Plant Cell, 2018, 30, 1645-1660
7.674Citations (PDF)
124Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
PLoS Genetics, 2018, 14, e1007267
3.390Citations (PDF)
125Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus
Nature, 2017, 541, 536-540
34.3379Citations (PDF)
126Divergent cytosine DNA methylation patterns in single‐cell, soybean root hairs
New Phytologist, 2017, 214, 808-819
8.197Citations (PDF)
127<scp>DNA</scp> methylation and gene expression regulation associated with vascularization in <i>Sorghum bicolor</i>
New Phytologist, 2017, 214, 1213-1229
8.155Citations (PDF)
128Sparse panicle1 is required for inflorescence development in Setaria viridis and maize
Nature Plants, 2017, 3,
11.867Citations (PDF)
129Draft Nuclear Genome Sequence of the Liquid Hydrocarbon–Accumulating Green Microalga <i>Botryococcus braunii</i> Race B (Showa)0.829Citations (PDF)
130The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies
Plant Cell, 2017, 29, 1218-1231
7.6166Citations (PDF)
131Young inversion with multiple linked QTLs under selection in a hybrid zone10.7114Citations (PDF)
132The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
BMC Genomics, 2017, 18,
3.3403Citations (PDF)
133Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga <i>Dunaliella salina</i> Strain CCAP19/180.893Citations (PDF)
134Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome
Cell, 2017, 171, 287-304.e15
28.61,256Citations (PDF)
135Insights of biomass recalcitrance in natural<i>Populus trichocarpa</i>variants for biomass conversion
Green Chemistry, 2017, 19, 5467-5478
9.3101Citations (PDF)
136Insights into the red algae and eukaryotic evolution from the genome of <i>Porphyra umbilicalis</i> (Bangiophyceae, Rhodophyta)7.5301Citations (PDF)
137The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism14.2197Citations (PDF)
138Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids3.725Citations (PDF)
139Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis
Developmental Biology, 2017, 426, 236-244
1.96Citations (PDF)
140Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass
BMC Genomics, 2016, 17,
3.317Citations (PDF)
141Sequence‐Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean
Plant Genome, 2016, 9,
3.513Citations (PDF)
142Genome‐Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean
Plant Genome, 2016, 9,
3.5163Citations (PDF)
143Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
PLoS Genetics, 2016, 12, e1006108
3.3216Citations (PDF)
144Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication
Current Biology, 2016, 26, 1577-1584
4.0194Citations (PDF)
145Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants
BMC Genomics, 2016, 17,
3.388Citations (PDF)
146Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
Nature Biotechnology, 2016, 34, 562-570
25.8405Citations (PDF)
147Widespread natural variation of DNA methylation within angiosperms
Genome Biology, 2016, 17,
8.1529Citations (PDF)
148The Sphagnum Genome Project0.022Citations (PDF)
149On the origin and evolutionary consequences of gene body DNA methylation7.5312Citations (PDF)
150Empty Niches after Extinctions Increase Population Sizes of Modern Corals
Current Biology, 2016, 26, 3190-3194
4.0105Citations (PDF)
151Genome-wide analysis of lectin receptor-like kinases in Populus
BMC Genomics, 2016, 17,
3.384Citations (PDF)
152Genome evolution in the allotetraploid frog Xenopus laevis
Nature, 2016, 538, 336-343
34.3989Citations (PDF)
153Complete Genome Sequence of <i>Alkaliphilus metalliredigens</i> Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds0.810Citations (PDF)
154Genetic analysis of Physcomitrella patens identifies ABSCISIC ACID NON-RESPONSIVE (ANR), a regulator of ABA responses unique to basal land plants and required for desiccation tolerance
Plant Cell, 2016, , tpc.00091.2016
7.6101Citations (PDF)
155Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
BMC Genomics, 2016, 17,
3.3151Citations (PDF)
156The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
Nature, 2016, 530, 331-335
34.3549Citations (PDF)
157Genome-Wide Sequencing of 41 Rice (Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation
Molecular Plant, 2016, 9, 1078-1081
12.890Citations (PDF)
158Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C<sub>4</sub>grass
Genome Research, 2016, 26, 510-518
4.762Citations (PDF)
159Evolving New Skeletal Traits by cis -Regulatory Changes in Bone Morphogenetic Proteins
Cell, 2016, 164, 45-56
28.6149Citations (PDF)
160Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control
PLoS Genetics, 2016, 12, e1005876
3.3105Citations (PDF)
161Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis
PLoS ONE, 2016, 11, e0151883
2.543Citations (PDF)
162Diversity and population structure of northern switchgrass as revealed through exome capture sequencing
Plant Journal, 2015, 84, 800-815
6.149Citations (PDF)
163A roadmap for research on crassulacean acid metabolism (<scp>CAM</scp>) to enhance sustainable food and bioenergy production in a hotter, drier world
New Phytologist, 2015, 207, 491-504
8.1233Citations (PDF)
164High‐Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping‐by‐Sequencing
Plant Genome, 2015, 8,
3.59Citations (PDF)
165Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP13.996Citations (PDF)
166Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?3.7124Citations (PDF)
167A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
Genome Biology, 2015, 16,
7.3262Citations (PDF)
168The genetics of divergence and reproductive isolation between ecotypes of<i>Panicum hallii</i>
New Phytologist, 2015, 205, 402-414
8.173Citations (PDF)
169Sequencing of 15 622 gene‐bearing <scp>BAC</scp>s clarifies the gene‐dense regions of the barley genome
Plant Journal, 2015, 84, 216-227
6.137Citations (PDF)
170SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean
G3: Genes, Genomes, Genetics, 2015, 5, 2285-2290
2.0171Citations (PDF)
171Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment0.819Citations (PDF)
172Hemichordate genomes and deuterostome origins
Nature, 2015, 527, 459-465
34.3267Citations (PDF)
173High‐resolution genetic maps of <i><scp>E</scp>ucalyptus</i> improve <i>Eucalyptus grandis</i> genome assembly
New Phytologist, 2015, 206, 1283-1296
8.1100Citations (PDF)
174<scp><i>S</i></scp><i>phagnum</i> physiology in the context of changing climate: emergent influences of genomics, modelling and host–microbiome interactions on understanding ecosystem function
Plant, Cell and Environment, 2015, 38, 1737-1751
6.467Citations (PDF)
175Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes
Bioenergy Research, 2015, 9, 109-122
2.710Citations (PDF)
176Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L.4.286Citations (PDF)
177Complete Plastome Sequences from <i>Glycine syndetika</i> and Six Additional Perennial Wild Relatives of Soybean
G3: Genes, Genomes, Genetics, 2014, 4, 2023-2033
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178Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris)4.241Citations (PDF)
179The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle14.2298Citations (PDF)
180Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
Nature Biotechnology, 2014, 32, 656-662
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181Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi7.5675Citations (PDF)
182The genome of Eucalyptus grandis
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183The Chlamydomonas genome project: a decade on
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184A reference genome for common bean and genome-wide analysis of dual domestications
Nature Genetics, 2014, 46, 707-713
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185Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass
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186An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions
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187Anchoring and ordering <scp>NGS</scp> contig assemblies by population sequencing (<scp>POPSEQ</scp>)
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188Identification and characterization of functional centromeres of the common bean
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189The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
Nature Genetics, 2013, 45, 487-494
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190The Capsella rubella genome and the genomic consequences of rapid mating system evolution
Nature Genetics, 2013, 45, 831-835
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191A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar4.218Citations (PDF)
192The Reference Genome of the Halophytic Plant Eutrema salsugineum4.2218Citations (PDF)
193Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens
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194Fine-scale variation in meiotic recombination in <i>Mimulus</i> inferred from population shotgun sequencing7.5216Citations (PDF)
195Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (<i>Panicum virgatum</i> L.)
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196The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color
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197Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1T)3.733Citations (PDF)
198Genome sequence of the button mushroom<i>Agaricus bisporus</i>reveals mechanisms governing adaptation to a humic-rich ecological niche7.5391Citations (PDF)
199Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
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200The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
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201Genetic Architecture of Variation in the Lateral Line Sensory System of Threespine Sticklebacks
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202Insight into trade‐off between wood decay and parasitism from the genome of a fungal forest pathogen
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203Genome Sequencing and Mapping Reveal Loss of Heterozygosity as a Mechanism for Rapid Adaptation in the Vegetable Pathogen <i>Phytophthora capsici</i>3.4289Citations (PDF)
204Theria‐Specific Homeodomain and<i>cis</i>‐Regulatory Element Evolution of the<i>Dlx3–4</i>Bigene Cluster in 12 Different Mammalian Species1.95Citations (PDF)
205Identical Genomic Organization of Two Hemichordate Hox Clusters
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206Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
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207A Genome-Wide Survey of Switchgrass Genome Structure and Organization
PLoS ONE, 2012, 7, e33892
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208The genomic basis of adaptive evolution in threespine sticklebacks
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209The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
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210Reference genome sequence of the model plant Setaria
Nature Biotechnology, 2012, 30, 555-561
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211A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks
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212Obligate biotrophy features unraveled by the genomic analysis of rust fungi7.5704Citations (PDF)
213Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum
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214The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants
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215Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)3.752Citations (PDF)
216The genome of Tetranychus urticae reveals herbivorous pest adaptations
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217Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris
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218The Switchgrass Genome: Tools and Strategies
Plant Genome, 2011, 4, 273-282
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219Complete genome sequence of Rhodospirillum rubrum type strain (S1T)3.751Citations (PDF)
220Complete genome sequence of Tolumonas auensis type strain (TA 4T)3.78Citations (PDF)
221Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)3.735Citations (PDF)
222Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide‐binding site leucine‐rich repeat (NBS‐LRR)‐rich genomic regions of chromosome 19 in poplar
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223Sequencing crop genomes: approaches and applications
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224The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Nature Genetics, 2011, 43, 476-481
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225The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks
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226Genome Sequence of the Verrucomicrobium Opitutus terrae PB90-1, an Abundant Inhabitant of Rice Paddy Soil Ecosystems
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227Genome Sequence of the Ethene- and Vinyl Chloride-Oxidizing Actinomycete Nocardioides sp. Strain JS614
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228The Plant Cell Wall–Decomposing Machinery Underlies the Functional Diversity of Forest Fungi
Science, 2011, 333, 762-765
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229Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
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230Genome sequence of the palaeopolyploid soybean
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231Genome sequence of the model mushroom Schizophyllum commune
Nature Biotechnology, 2010, 28, 957-963
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232Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
Genome Research, 2010, 20, 301-310
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233Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome7.567Citations (PDF)
234Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a <i>Pitx1</i> Enhancer
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235Bifurcation and Enhancement of Autonomous-Nonautonomous Retrotransposon Partnership through LTR Swapping in Soybean  
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236Whole-genome sequencing and intensive analysis of the undomesticated soybean ( <i>Glycine soja</i> Sieb. and Zucc.) genome7.5323Citations (PDF)
237The Draft Soybean Genome Sequence
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238The completion of the Mammalian Gene Collection (MGC)
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239The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion
PLoS Genetics, 2009, 5, e1000618
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240Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response
BMC Genomics, 2009, 10,
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241The Sorghum bicolor genome and the diversification of grasses
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242A role for a neo-sex chromosome in stickleback speciation
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243Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes <i>Micromonas</i>
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244S14-03 From trait to base pairs: Parallel evolution of pelvic reduction in three-spined sticklebacks occurs by repeated deletion of a tissue-specific pelvic enhancer at Pitx1
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245The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
Nature, 2008, 452, 88-92
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246The amphioxus genome and the evolution of the chordate karyotype
Nature, 2008, 453, 1064-1071
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247The Trichoplax genome and the nature of placozoans
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248The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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249Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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250Sequence and Assembly of the Soybean Genome
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251The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation7.5603Citations (PDF)
252Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis
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253A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation
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254Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling
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255Toward a Reference Sequence of the Soybean Genome: A Multiagency Effort
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256Generation and annotation of the DNA sequences of human chromosomes 2 and 4
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257Coelacanth genome sequence reveals the evolutionary history of vertebrate genes
Genome Research, 2004, 14, 2397-2405
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258Quality assessment of the human genome sequence
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259The DNA sequence and biology of human chromosome 19
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260The DNA sequence and comparative analysis of human chromosome 5
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261The sequence and analysis of duplication-rich human chromosome 16
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262Fowl sequence
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263The Master Sex-Determination Locus in Threespine Sticklebacks Is on a Nascent Y Chromosome
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264Gene Conversion and the Evolution of Protocadherin Gene Cluster Diversity
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265Six is seventh
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266Extensive Linkage Disequilibrium, a Common 16.7-Kilobase Deletion, and Evidence of Balancing Selection in the Human Protocadherin α Cluster6.553Citations (PDF)
267Coding potential of laboratory and clinical strains of human cytomegalovirus7.5474Citations (PDF)
268Assessing the Quality of Finished Genomic Sequence2.12Citations (PDF)
269Rapid Mapping of Zebrafish Mutations With SNPs and Oligonucleotide Microarrays
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270Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences7.51,654Citations (PDF)
271Comparative DNA Sequence Analysis of Mouse and Human Protocadherin Gene Clusters
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272Initial sequencing and analysis of the human genome
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273The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history
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274The western redcedar genome reveals low genetic diversity in a self-compatible conifer4.718Citations (PDF)
275GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
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