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62 peer-reviewed articles • 44,584 peer-reviewed citations • Sorted by year • Download PDF (PDF by citations)
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1DLBclass: a probabilistic molecular classifier to guide clinical investigation and practice in diffuse large B-cell lymphoma
Blood, 2025, 145, 2041-2055
4.832Citations (PDF)
2High-Resolution Profiling of Lung Adenocarcinoma Identifies Expression Subtypes with Specific Biomarkers and Clinically Relevant Vulnerabilities
Cancer Research, 2022, 82, 3917-3931
3.835Citations (PDF)
3PANOPLY: a cloud-based platform for automated and reproducible proteogenomic data analysis
Nature Methods, 2021, 18, 580-582
24.618Citations (PDF)
4A proteogenomic portrait of lung squamous cell carcinoma
Cell, 2021, 184, 4348-4371.e40
33.6359Citations (PDF)
5Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
Cell, 2020, 183, 1436-1456.e31
33.6519Citations (PDF)
6Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
Cell, 2020, 182, 200-225.e35
33.6741Citations (PDF)
7Proteogenomic Characterization of Endometrial Carcinoma
Cell, 2020, 180, 729-748.e26
33.6455Citations (PDF)
8Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons’ Data
Cell Systems, 2019, 9, 24-34.e10
5.8142Citations (PDF)
9A comprehensive genomic history of extinct and living elephants
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115,
7.5192Citations (PDF)
10An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
Cell, 2018, 173, 400-416.e11
33.63,383Citations (PDF)
11Comprehensive Characterization of Cancer Driver Genes and Mutations
Cell, 2018, 173, 371-385.e18
33.62,131Citations (PDF)
12Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer
Cell, 2018, 173, 291-304.e6
33.62,413Citations (PDF)
13A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples
Cell, 2018, 173, 386-399.e12
33.6297Citations (PDF)
14Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics
Cell, 2018, 173, 305-320.e10
33.6375Citations (PDF)
15Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation
Cell, 2018, 173, 338-354.e15
33.62,033Citations (PDF)
16Oncogenic Signaling Pathways in The Cancer Genome Atlas
Cell, 2018, 173, 321-337.e10
33.62,971Citations (PDF)
17Pathogenic Germline Variants in 10,389 Adult Cancers
Cell, 2018, 173, 355-370.e14
33.6820Citations (PDF)
18Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types
Cell Reports, 2018, 23, 282-296.e4
6.3432Citations (PDF)
19Driver Fusions and Their Implications in the Development and Treatment of Human Cancers
Cell Reports, 2018, 23, 227-238.e3
6.3583Citations (PDF)
20Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas
Cell Reports, 2018, 23, 194-212.e6
6.3319Citations (PDF)
21Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context
Cell Reports, 2018, 23, 297-312.e12
6.3240Citations (PDF)
22The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
Cell Reports, 2018, 23, 313-326.e5
6.3708Citations (PDF)
23Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images
Cell Reports, 2018, 23, 181-193.e7
6.3960Citations (PDF)
24The Immune Landscape of Cancer
Immunity, 2018, 48, 812-830.e14
22.65,116Citations (PDF)
25Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
Cell Reports, 2018, 23, 172-180.e3
6.3148Citations (PDF)
26Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types
Cell Reports, 2018, 23, 213-226.e3
6.3110Citations (PDF)
27Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas
Cell Reports, 2018, 23, 239-254.e6
6.31,060Citations (PDF)
28Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers
Cell Reports, 2018, 23, 255-269.e4
6.3288Citations (PDF)
29Systematic Analysis of Splice-Site-Creating Mutations in Cancer
Cell Reports, 2018, 23, 270-281.e3
6.3227Citations (PDF)
30The Integrated Genomic Landscape of Thymic Epithelial Tumors
Cancer Cell, 2018, 33, 244-258.e10
33.0361Citations (PDF)
31Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines
Cell Systems, 2018, 6, 271-281.e7
5.8825Citations (PDF)
32Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas
Cell Systems, 2018, 6, 282-300.e2
5.8413Citations (PDF)
33lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer
Cancer Cell, 2018, 33, 706-720.e9
33.0457Citations (PDF)
34Genomic and Functional Approaches to Understanding Cancer Aneuploidy
Cancer Cell, 2018, 33, 676-689.e3
33.01,065Citations (PDF)
35Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas
Cancer Cell, 2018, 33, 721-735.e8
33.0519Citations (PDF)
36A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers
Cancer Cell, 2018, 33, 690-705.e9
33.0619Citations (PDF)
37A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β Superfamily
Cell Systems, 2018, 7, 422-437.e7
5.8174Citations (PDF)
38Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Cancer Discovery, 2018, 8, 1548-1565
25.1572Citations (PDF)
39Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer
Cell Reports, 2018, 25, 1304-1317.e5
6.3492Citations (PDF)
40Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients
Cancer Cell, 2018, 34, 211-224.e6
33.0890Citations (PDF)
41Integrated Molecular Characterization of Testicular Germ Cell Tumors
Cell Reports, 2018, 23, 3392-3406
6.3437Citations (PDF)
42Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma
Cancer Cell, 2017, 31, 181-193
33.0731Citations (PDF)
43Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma
Cell, 2017, 169, 1327-1341.e23
33.62,272Citations (PDF)
44Integrated Molecular Characterization of Uterine Carcinosarcoma
Cancer Cell, 2017, 31, 411-423
33.0413Citations (PDF)
45Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles
Cell Reports, 2017, 18, 2780-2794
6.3516Citations (PDF)
46Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma
Cancer Cell, 2017, 32, 204-220.e15
33.0837Citations (PDF)
47Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma
Cancer Cell, 2017, 32, 185-203.e13
33.01,919Citations (PDF)
48Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas
Cell, 2017, 171, 950-965.e28
33.6996Citations (PDF)
49Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma
Cancer Cell, 2016, 29, 723-736
33.0594Citations (PDF)
50Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas
New England Journal of Medicine, 2015, 372, 2481-2498
34.53,041Citations (PDF)
51Contrasting host–pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes
Nature Communications, 2015, 6,
13.7121Citations (PDF)
52The Somatic Genomic Landscape of Glioblastoma
Cell, 2013, 155, 462-477
33.64,805Citations (PDF)
53Mutational heterogeneity in cancer and the search for new cancer-associated genes
Nature, 2013, 499, 214-218
37.95,336Citations (PDF)
54Complete Genome Sequences from Three Genetically Distinct Strains Reveal High Intraspecies Genetic Diversity in the Microsporidian Encephalitozoon cuniculi
Eukaryotic Cell, 2013, 12, 503-511
2.764Citations (PDF)
55Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection
MBio, 2012, 3,
4.4239Citations (PDF)
56Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
Nature Genetics, 2012, 44, 1060-1065
25.21,005Citations (PDF)
57Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth
Genome Research, 2012, 22, 2478-2488
4.6270Citations (PDF)
58The genome of the green anole lizard and a comparative analysis with birds and mammals
Nature, 2011, 477, 587-591
37.9640Citations (PDF)
59Comparative Functional Genomics of the Fission Yeasts
Science, 2011, 332, 930-936
36.3502Citations (PDF)
60Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis
PLoS Genetics, 2011, 7, e1002345
3.2184Citations (PDF)
61Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens
PLoS Pathogens, 2011, 7, e1002137
4.4548Citations (PDF)
62Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control
Genome Research, 2010, 20, 938-946
4.6190Citations (PDF)