| 1 | LSD600: the first corpus of biomedical abstracts annotated with lifestyle–disease relations | 2.7 | 0 | Citations (PDF) |
| 2 | FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data | 4.7 | 5 | Citations (PDF) |
| 3 | Opportunities and barriers in omics-based biomarker discovery for steatotic liver diseases | 4.2 | 56 | Citations (PDF) |
| 4 | Imputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning | 13.7 | 45 | Citations (PDF) |
| 5 | CoNECo: a Corpus for Named Entity recognition and normalization of protein Complexes | 2.4 | 0 | Citations (PDF) |
| 6 | RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature | 2.7 | 4 | Citations (PDF) |
| 7 | STRING-ing together protein complexes: corpus and methods for extracting physical protein interactions from the biomedical literature | 4.7 | 16 | Citations (PDF) |
| 8 | Streamlined analysis of drug targets by proteome integral solubility alteration indicates organ-specific engagement | 13.7 | 24 | Citations (PDF) |
| 9 | Lifestyle factors in the biomedical literature: an ontology and comprehensive resources for named entity recognition | 4.7 | 2 | Citations (PDF) |
| 10 | Functional Analysis of MS-Based Proteomics Data: From Protein Groups to Networks | 3.0 | 9 | Citations (PDF) |
| 11 | eggNOG 6.0: enabling comparative genomics across 12 535 organisms | 15.5 | 305 | Citations (PDF) |
| 12 | Pharos 2023: an integrated resource for the understudied human proteome | 15.5 | 123 | Citations (PDF) |
| 13 | Recent advances in kinase signaling network profiling by mass spectrometry | 5.8 | 37 | Citations (PDF) |
| 14 | About the dark corners in the gene function space of Escherichia coli remaining without illumination by scientific literature | 4.3 | 11 | Citations (PDF) |
| 15 | Arena3Dweb: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration | 2.2 | 16 | Citations (PDF) |
| 16 | S1000: a better taxonomic name corpus for biomedical information extraction | 4.7 | 15 | Citations (PDF) |
| 17 | Differential Expression of the β3 Subunit of Voltage-Gated Ca2+ Channel in Mesial Temporal Lobe Epilepsy | 3.7 | 7 | Citations (PDF) |
| 18 | Loss of N-terminal acetyltransferase A activity induces thermally unstable ribosomal proteins and increases their turnover in Saccharomyces cerevisiae | 13.7 | 20 | Citations (PDF) |
| 19 | Did the early full genome sequencing of yeast boost gene function discovery? | 4.3 | 2 | Citations (PDF) |
| 20 | PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types | 3.8 | 22 | Citations (PDF) |
| 21 | A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research | 4.5 | 6 | Citations (PDF) |
| 22 | A knowledge graph to interpret clinical proteomics data | 29.8 | 248 | Citations (PDF) |
| 23 | Diet-induced hypertension in rats is associated with increased renal vasoconstrictor response to angiotensin II after imitated endothelial dysfunction | 2.5 | 1 | Citations (PDF) |
| 24 | Diseases 2.0: a weekly updated database of disease–gene associations from text mining and data integration | 2.7 | 133 | Citations (PDF) |
| 25 | Phosphorylation of SHP2 at Tyr62 Enables Acquired Resistance to SHP2 Allosteric Inhibitors in FLT3-ITD–Driven AML | 3.8 | 19 | Citations (PDF) |
| 26 | Differentially Expressed miRNAs in Ulcerative Colitis and Crohn’s Disease | 4.9 | 52 | Citations (PDF) |
| 27 | A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment | 13.7 | 27 | Citations (PDF) |
| 28 | Light-induced asymmetries in embryonic retinal gene expression are mediated by the vascular system and extracellular matrix | 3.4 | 11 | Citations (PDF) |
| 29 | U‐CIE
[/juː ‘siː/]: Color encoding of high‐dimensional data | 5.9 | 4 | Citations (PDF) |
| 30 | Identifying the genes impacted by cell proliferation in proteomics and transcriptomics studies | 3.1 | 34 | Citations (PDF) |
| 31 | TCRD and Pharos 2021: mining the human proteome for disease biology | 15.5 | 164 | Citations (PDF) |
| 32 | The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets | 15.5 | 7,178 | Citations (PDF) |
| 33 | Improved metagenome binning and assembly using deep variational autoencoders | 29.8 | 605 | Citations (PDF) |
| 34 | Homology-directed repair protects the replicating genome from metabolic assaults | 7.7 | 58 | Citations (PDF) |
| 35 | Human pathways in animal models: possibilities and limitations | 15.5 | 91 | Citations (PDF) |
| 36 | Quantitative proteome comparison of human hearts with those of model organisms | 5.0 | 52 | Citations (PDF) |
| 37 | TIGA: target illumination GWAS analytics | 4.7 | 17 | Citations (PDF) |
| 38 | Correction to ‘The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets’ | 15.5 | 423 | Citations (PDF) |
| 39 | OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis | 2.2 | 16 | Citations (PDF) |
| 40 | CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision | 4.7 | 25 | Citations (PDF) |
| 41 | Alcoholic liver disease: A registry view on comorbidities and disease prediction | 3.1 | 22 | Citations (PDF) |
| 42 | P135 MAJOR GENE REGULATORS AFFECTED IN COLON AND BLOOD OF DEXTRAN SODIUM SULFATE ACUTE COLITIS MURINE MODEL | 2.9 | 0 | Citations (PDF) |
| 43 | Yield and Integrity of RNA from Brain Samples are Largely Unaffected by Pre-analytical Procedures | 3.4 | 5 | Citations (PDF) |
| 44 | Visualize omics data on networks with Omics Visualizer, a Cytoscape App | 0.5 | 99 | Citations (PDF) |
| 45 | Visualize omics data on networks with Omics Visualizer, a Cytoscape App | 0.5 | 53 | Citations (PDF) |
| 46 | Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types | 2.9 | 16 | Citations (PDF) |
| 47 | ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins | 3.1 | 11 | Citations (PDF) |
| 48 | SnapShot: S-Phase Entry and ExitCell, 2019, 179, 802-802.e1 | 33.6 | 3 | Citations (PDF) |
| 49 | Transcriptome analysis in patients with temporal lobe epilepsyBrain, 2019, 142, e55-e55 | 8.4 | 24 | Citations (PDF) |
| 50 | Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine SitesCell, 2019, 179, 543-560.e26 | 33.6 | 90 | Citations (PDF) |
| 51 | Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models | 3.4 | 5 | Citations (PDF) |
| 52 | P088 Transcriptome landscape of protein-coding genes and long noncoding RNAs in the colon and blood of DSS-induced mouse model of Acute ulcerative colitis | 1.3 | 2 | Citations (PDF) |
| 53 | Analysis of Predicted Host–Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism | 4.9 | 39 | Citations (PDF) |
| 54 | STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets | 15.5 | 16,619 | Citations (PDF) |
| 55 | eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses | 15.5 | 4,812 | Citations (PDF) |
| 56 | Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data | 3.4 | 2,097 | Citations (PDF) |
| 57 | Inferring disease-associated long non-coding RNAs using genome-wide tissue expression profiles | 4.7 | 29 | Citations (PDF) |
| 58 | Unexplored therapeutic opportunities in the human genome | 79.7 | 364 | Citations (PDF) |
| 59 | Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting | 1.4 | 3 | Citations (PDF) |
| 60 | Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting | 14.4 | 117 | Citations (PDF) |
| 61 | miRandola 2017: a curated knowledge base of non-invasive biomarkers | 15.5 | 78 | Citations (PDF) |
| 62 | WebCircRNA: Classifying the Circular RNA Potential of Coding and Noncoding RNA | 2.5 | 39 | Citations (PDF) |
| 63 | Quantitative metaproteomics of medieval dental calculus reveals individual oral health status | 13.7 | 92 | Citations (PDF) |
| 64 | Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000 | 3.1 | 47 | Citations (PDF) |
| 65 | Viruses.STRING: A Virus-Host Protein-Protein Interaction Database | 3.2 | 144 | Citations (PDF) |
| 66 | Role of age, Rho-kinase 2 expression, and G protein-mediated signaling in the myogenic response in mouse small mesenteric arteries | 1.6 | 21 | Citations (PDF) |
| 67 | Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation | 6.3 | 179 | Citations (PDF) |
| 68 | TISSUES 2.0: an integrative web resource on mammalian tissue expression | 2.7 | 188 | Citations (PDF) |
| 69 | Site-specific characterization of endogenous SUMOylation across species and organs | 13.7 | 210 | Citations (PDF) |
| 70 | LocText: relation extraction of protein localizations to assist database curation | 3.0 | 170 | Citations (PDF) |
| 71 | Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates | 2.3 | 21 | Citations (PDF) |
| 72 | TISSUES 2.0: an integrative web resource on mammalian tissue expression | 2.7 | 45 | Citations (PDF) |
| 73 | A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts | 3.1 | 148 | Citations (PDF) |
| 74 | Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation | 8.8 | 387 | Citations (PDF) |
| 75 | Pharos: Collating protein information to shed light on the druggable genome | 15.5 | 320 | Citations (PDF) |
| 76 | miRNAs in human subcutaneous adipose tissue: Effects of weight loss induced by hypocaloric diet and exercise | 4.0 | 46 | Citations (PDF) |
| 77 | Accurate Quantification of Site-specific Acetylation Stoichiometry Reveals the Impact of Sirtuin Deacetylase CobB on the E. coli Acetylome | 3.0 | 98 | Citations (PDF) |
| 78 | TIN-X: target importance and novelty explorer | 4.7 | 32 | Citations (PDF) |
| 79 | Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper | 4.7 | 2,855 | Citations (PDF) |
| 80 | Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer | 6.3 | 99 | Citations (PDF) |
| 81 | The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible | 15.5 | 7,105 | Citations (PDF) |
| 82 | RAIN: RNA–protein Association and Interaction Networks | 2.7 | 61 | Citations (PDF) |
| 83 | Specifying RNA-Binding Regions in Proteins by Peptide Cross-Linking and Affinity Purification | 3.4 | 64 | Citations (PDF) |
| 84 | Structure‐based discovery of novel US28 small molecule ligands with different modes of action | 3.1 | 12 | Citations (PDF) |
| 85 | Drug target ontology to classify and integrate drug discovery data | 1.5 | 74 | Citations (PDF) |
| 86 | EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation | 2.7 | 49 | Citations (PDF) |
| 87 | Standardized benchmarking in the quest for orthologs | 24.6 | 234 | Citations (PDF) |
| 88 | Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells | 5.4 | 312 | Citations (PDF) |
| 89 | Overview of the interactive task in BioCreative V | 2.7 | 39 | Citations (PDF) |
| 90 | The SIDER database of drugs and side effects | 15.5 | 1,353 | Citations (PDF) |
| 91 | STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data | 15.5 | 1,610 | Citations (PDF) |
| 92 | SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles | 4.7 | 113 | Citations (PDF) |
| 93 | eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences | 15.5 | 2,264 | Citations (PDF) |
| 94 | Impact of microRNA-130a on the neutrophil proteome | 2.4 | 12 | Citations (PDF) |
| 95 | Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation | 5.4 | 70 | Citations (PDF) |
| 96 | ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life | 4.7 | 19 | Citations (PDF) |
| 97 | DISEASES: Text mining and data integration of disease–gene associations | 3.5 | 579 | Citations (PDF) |
| 98 | STRING v10: protein–protein interaction networks, integrated over the tree of life | 15.5 | 10,440 | Citations (PDF) |
| 99 | Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation | 3.0 | 500 | Citations (PDF) |
| 100 | Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes | 15.5 | 240 | Citations (PDF) |
| 101 | Acetylation site specificities of lysine deacetylase inhibitors in human cells | 29.8 | 275 | Citations (PDF) |
| 102 | Avoiding abundance bias in the functional annotation of posttranslationally modified proteins | 24.6 | 69 | Citations (PDF) |
| 103 | Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow | 3.4 | 79 | Citations (PDF) |
| 104 | No apparent role for T-type Ca2+ channels in renal autoregulation | 2.3 | 6 | Citations (PDF) |
| 105 | A Comparison of Protein Kinases Inhibitor Screening Methods Using Both Enzymatic Activity and Binding Affinity Determination | 2.3 | 79 | Citations (PDF) |
| 106 | STITCH 4: integration of protein–chemical interactions with user data | 15.5 | 472 | Citations (PDF) |
| 107 | Protein-driven inference of miRNA–disease associations | 4.7 | 202 | Citations (PDF) |
| 108 | COMPARTMENTS: unification and visualization of protein subcellular localization evidence | 2.7 | 648 | Citations (PDF) |
| 109 | Discrepancies in listed adverse drug reactions in pharmaceutical product information supplied by the regulatory authorities in Denmark and the USA | 2.2 | 26 | Citations (PDF) |
| 110 | eggNOG v4.0: nested orthology inference across 3686 organisms | 15.5 | 636 | Citations (PDF) |
| 111 | Proteomic Analysis of Arginine Methylation Sites in Human Cells Reveals Dynamic Regulation During Transcriptional Arrest | 3.0 | 93 | Citations (PDF) |
| 112 | Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population | 2.8 | 97 | Citations (PDF) |
| 113 | Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients | 13.7 | 379 | Citations (PDF) |
| 114 | KinomeXplorer: an integrated platform for kinome biology studies | 24.6 | 347 | Citations (PDF) |
| 115 | Predicting Kinase Activity in Angiotensin Receptor Phosphoproteomes Based on Sequence-Motifs and Interactions | 2.3 | 8 | Citations (PDF) |
| 116 | A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk | 33.6 | 226 | Citations (PDF) |
| 117 | TIMP-1 Increases Expression and Phosphorylation of Proteins Associated with Drug Resistance in Breast Cancer Cells | 3.4 | 39 | Citations (PDF) |
| 118 | Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse | 37.9 | 805 | Citations (PDF) |
| 119 | Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text | 3.5 | 74 | Citations (PDF) |
| 120 | In Vivo Phosphoproteomics Analysis Reveals the Cardiac Targets of β-Adrenergic Receptor Signaling | 5.4 | 187 | Citations (PDF) |
| 121 | Are graph databases ready for bioinformatics? | 4.7 | 77 | Citations (PDF) |
| 122 | Systematic identification of proteins that elicit drug side effects | 6.7 | 120 | Citations (PDF) |
| 123 | The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text | 2.3 | 175 | Citations (PDF) |
| 124 | DistiLD Database: diseases and traits in linkage disequilibrium blocks | 15.5 | 35 | Citations (PDF) |
| 125 | Identification of Novel Type 1 Diabetes Candidate Genes by Integrating Genome-Wide Association Data, Protein-Protein Interactions, and Human Pancreatic Islet Gene Expression | 4.2 | 112 | Citations (PDF) |
| 126 | eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges | 15.5 | 523 | Citations (PDF) |
| 127 | STRING v9.1: protein-protein interaction networks, with increased coverage and integration | 15.5 | 4,158 | Citations (PDF) |
| 128 | STITCH 3: zooming in on protein-chemical interactions | 15.5 | 272 | Citations (PDF) |
| 129 | Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs | 3.1 | 22 | Citations (PDF) |
| 130 | Genes adopt non‐optimal codon usage to generate cell cycle‐dependent oscillations in protein levels | 6.7 | 126 | Citations (PDF) |
| 131 | Transcriptional Regulation Is a Major Controller of Cell Cycle Transition Dynamics | 2.3 | 15 | Citations (PDF) |
| 132 | Mining electronic health records: towards better research applications and clinical care | 46.9 | 1,474 | Citations (PDF) |
| 133 | Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins | 3.4 | 227 | Citations (PDF) |
| 134 | Reply to 'Mining electronic health records: an additional perspective' | 46.9 | 2 | Citations (PDF) |
| 135 | The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored | 15.5 | 3,240 | Citations (PDF) |
| 136 | Proteome-Wide Mapping of the
Drosophila
Acetylome Demonstrates a High Degree of Conservation of Lysine Acetylation | 5.4 | 271 | Citations (PDF) |
| 137 | Specific CLK Inhibitors from a Novel Chemotype for Regulation of Alternative Splicing | 4.7 | 192 | Citations (PDF) |
| 138 | Mass Spectrometric Analysis of Lysine Ubiquitylation Reveals Promiscuity at Site Level | 3.0 | 292 | Citations (PDF) |
| 139 | Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts | 3.1 | 245 | Citations (PDF) |
| 140 | The rise and fall of supervised machine learning techniques | 4.7 | 32 | Citations (PDF) |
| 141 | Phospho.ELM: a database of phosphorylation sites--update 2011 | 15.5 | 637 | Citations (PDF) |
| 142 | Protein annotation in the era of personal genomics | 6.4 | 2 | Citations (PDF) |
| 143 | Suppression of Water as a Nucleophile in Candida antarctica Lipase B Catalysis | 2.6 | 38 | Citations (PDF) |
| 144 | Reflect: A practical approach to web semantics | 2.4 | 14 | Citations (PDF) |
| 145 | Evolution and regulation of cellular periodic processes: a role for paralogues | 5.2 | 5 | Citations (PDF) |
| 146 | STITCH 2: an interaction network database for small molecules and proteins | 15.5 | 250 | Citations (PDF) |
| 147 | Martini: using literature keywords to compare gene sets | 15.5 | 52 | Citations (PDF) |
| 148 | eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations | 15.5 | 215 | Citations (PDF) |
| 149 | A side effect resource to capture phenotypic effects of drugs | 6.7 | 833 | Citations (PDF) |
| 150 | Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results | 15.5 | 53 | Citations (PDF) |
| 151 | Drug-Induced Regulation of Target Expression | 3.1 | 134 | Citations (PDF) |
| 152 | Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis | 5.4 | 1,437 | Citations (PDF) |
| 153 | High-resolution transcription atlas of the mitotic cell cycle in budding yeast | 8.1 | 103 | Citations (PDF) |
| 154 | STRING 8--a global view on proteins and their functional interactions in 630 organisms | 15.5 | 2,344 | Citations (PDF) |
| 155 | Cell cycle regulation by feed‐forward loops coupling transcription and phosphorylation | 6.7 | 47 | Citations (PDF) |
| 156 | Quantifying environmental adaptation of metabolic pathways in metagenomics | 7.5 | 196 | Citations (PDF) |
| 157 | Reflect: augmented browsing for the life scientist | 29.8 | 93 | Citations (PDF) |
| 158 | Prediction of novel archaeal enzymes from sequence-derived features | 5.9 | 33 | Citations (PDF) |
| 159 | Sequence-based feature prediction and annotation of proteins | 12.2 | 55 | Citations (PDF) |
| 160 | Linear Motif Atlas for Phosphorylation-Dependent Signaling | 5.4 | 438 | Citations (PDF) |
| 161 | Large‐scale prediction of drug–target relationships | 2.7 | 85 | Citations (PDF) |
| 162 | Predicting biological networks from genomic data | 2.7 | 42 | Citations (PDF) |
| 163 | Circular reasoning rather than cyclic expression | 12.2 | 4 | Citations (PDF) |
| 164 | Text mining for biology - the way forward: opinions from leading scientists | 12.2 | 78 | Citations (PDF) |
| 165 | Enhanced function annotations for Drosophila serine proteases: A case study for systematic annotation of multi-member gene families | 2.3 | 36 | Citations (PDF) |
| 166 | Quantitative assessment of protein function prediction from metagenomics shotgun sequences | 7.5 | 73 | Citations (PDF) |
| 167 | SuperTarget and Matador: resources for exploring drug-target relationships | 15.5 | 585 | Citations (PDF) |
| 168 | STRING 7--recent developments in the integration and prediction of protein interactions | 15.5 | 605 | Citations (PDF) |
| 169 | eggNOG: automated construction and annotation of orthologous groups of genes | 15.5 | 514 | Citations (PDF) |
| 170 | STITCH: interaction networks of chemicals and proteins | 15.5 | 896 | Citations (PDF) |
| 171 | Cyclebase.org a comprehensive multi-organism online database of cell-cycle experiments | 15.5 | 70 | Citations (PDF) |
| 172 | Identification of tightly regulated groups of genes during
Drosophila melanogaster
embryogenesis | 6.7 | 71 | Citations (PDF) |
| 173 | Systematic Discovery of In Vivo Phosphorylation NetworksCell, 2007, 129, 1415-1426 | 33.6 | 732 | Citations (PDF) |
| 174 | NetworKIN: a resource for exploring cellular phosphorylation networks | 15.5 | 361 | Citations (PDF) |
| 175 | A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development | 7.7 | 220 | Citations (PDF) |
| 176 | The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast | 2.5 | 61 | Citations (PDF) |
| 177 | Origin of replication in circular prokaryotic chromosomes | 3.7 | 124 | Citations (PDF) |
| 178 | Literature mining for the biologist: from information retrieval to biological discovery | 46.9 | 596 | Citations (PDF) |
| 179 | Proteome survey reveals modularity of the yeast cell machinery | 37.9 | 2,430 | Citations (PDF) |
| 180 | Co-evolution of transcriptional and post-translational cell-cycle regulation | 37.9 | 171 | Citations (PDF) |
| 181 | Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle | 3.2 | 69 | Citations (PDF) |
| 182 | Extraction of regulatory gene/protein networks from Medline | 4.7 | 122 | Citations (PDF) |
| 183 | Identification and analysis of evolutionarily cohesive functional modules in protein networks | 4.6 | 60 | Citations (PDF) |
| 184 | Systems biology: in the broadest sense of the word | 3.7 | 0 | Citations (PDF) |
| 185 | Extraction of Transcript Diversity from Scientific Literature | 3.1 | 48 | Citations (PDF) |
| 186 | Systematic Association of Genes to Phenotypes by Genome and Literature Mining | 5.0 | 141 | Citations (PDF) |
| 187 | Spore number control and breeding in Saccharomyces cerevisiae | 5.4 | 86 | Citations (PDF) |
| 188 | Comparison of computational methods for the identification of cell cycle-regulated genes | 4.7 | 193 | Citations (PDF) |
| 189 | Re-analysis of data and its integration | 2.7 | 8 | Citations (PDF) |
| 190 | STRING: known and predicted protein-protein associations, integrated and transferred across organisms | 15.5 | 1,607 | Citations (PDF) |
| 191 | Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs | 29.8 | 180 | Citations (PDF) |
| 192 | Protein interaction networks from yeast to human | 6.4 | 336 | Citations (PDF) |
| 193 | Feature-based prediction of non-classical and leaderless protein secretion | 2.6 | 1,153 | Citations (PDF) |
| 194 | Protein interaction networks from yeast to human | 6.4 | 2 | Citations (PDF) |
| 195 | Quality analysis and integration of large-scale molecular data sets | 0.3 | 2 | Citations (PDF) |
| 196 | ArrayProspector: a web resource of functional associations inferred from microarray expression data | 15.5 | 29 | Citations (PDF) |
| 197 | Protein Disorder Prediction | 3.8 | 1,187 | Citations (PDF) |
| 198 | Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome | 3.3 | 9 | Citations (PDF) |
| 199 | Prediction of human protein function according to Gene Ontology categories | 4.7 | 234 | Citations (PDF) |
| 200 | Protein Feature Based Identification of Cell Cycle Regulated Proteins in Yeast | 4.1 | 28 | Citations (PDF) |
| 201 | Functionality of System Components: Conservation of Protein Function in Protein Feature Space | 4.6 | 39 | Citations (PDF) |
| 202 | The Atlas visualization of genomewide information | 0.3 | 9 | Citations (PDF) |
| 203 | A new non-linear normalization method for reducing variability in DNA microarray experiments | 8.1 | 451 | Citations (PDF) |
| 204 | Prediction of Human Protein Function from Post-translational Modifications and Localization Features | 4.1 | 320 | Citations (PDF) |
| 205 | On the total number of genes and their length distribution in complete microbial genomes | 9.8 | 196 | Citations (PDF) |
| 206 | Title is missing! | 1.1 | 10 | Citations (PDF) |
| 207 | Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation | 4.7 | 111 | Citations (PDF) |
| 208 | Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima | 15.5 | 78 | Citations (PDF) |
| 209 | A DNA structural atlas for Escherichia coli 1 1Edited by T. Richmond | 4.1 | 219 | Citations (PDF) |
| 210 | Three views of microbial genomes | 3.0 | 66 | Citations (PDF) |
| 211 | Scoring functions for computational algorithms applicable to the design of spiked oligonucleotides | 15.5 | 17 | Citations (PDF) |
| 212 | Linking glycemic dysregulation in diabetes to symptoms, comorbidities, and genetics through EHR data mining | 0.7 | 15 | Citations (PDF) |
| 213 | Comprehensive comparison of large-scale tissue expression datasets | 0.0 | 114 | Citations (PDF) |
| 214 | Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls | 0.0 | 75 | Citations (PDF) |
| 215 | Seqenv
: linking sequences to environments through text mining | 0.0 | 30 | Citations (PDF) |
| 216 | DoReMi: context-based prioritization of linear motif matches | 0.0 | 6 | Citations (PDF) |
| 217 | HOODS: finding context-specific neighborhoods of proteins, chemicals and diseases | 0.0 | 1 | Citations (PDF) |
| 218 | Pancreatic cancer symptom trajectories from Danish registry data and free text in electronic health records | 0.7 | 9 | Citations (PDF) |
| 219 | A ligand-receptor interactome of the bone tumor microenvironment in multiple myeloma bone pain | 4.2 | 2 | Citations (PDF) |
| 220 | SPACE: STRING proteins as complementary embeddings | 4.7 | 6 | Citations (PDF) |
| 221 | Deep learning models simultaneously trained on multiple datasets improve base-editing activity prediction | 13.7 | 2 | Citations (PDF) |
| 222 | Cross-disease analysis identifies the inflammatome as a transcriptional program of inflammation | 6.3 | 1 | Citations (PDF) |
| 223 | Accurate plasmid reconstruction from metagenomics data using assembly–alignment graphs and contrastive learning | 29.8 | 2 | Citations (PDF) |
| 224 | LLM-Assessed Relatedness of Microbiome Study Descriptions Aligns more Strongly with Functional than with Taxonomic Profile Similarity | 3.3 | 0 | Citations (PDF) |
| 225 | CCMRI: a classification and curated database of climate change-related microbiome studies | 3.4 | 0 | Citations (PDF) |
| 226 | Molecular maps of diseases from omics data and network embeddings | 2.9 | 0 | Citations (PDF) |
