| 1 | <i>Inoviridae</i>
prophage and bacterial host dynamics during diversification, succession, and Atlantic invasion of Pacific-native
<i>Vibrio parahaemolyticus</i> | 4.4 | 6 | Citations (PDF) |
| 2 | <i>Streptococcus pneumoniae</i>
favors tolerance via metabolic adaptation over resistance to circumvent fluoroquinolones | 4.4 | 7 | Citations (PDF) |
| 3 | Harnessing the Diversity of Burkholderia spp. Prophages for Therapeutic Potential | 4.8 | 3 | Citations (PDF) |
| 4 | Cystic fibrosis pathogens persist in the upper respiratory tract following initiation of elexacaftor/tezacaftor/ivacaftor therapy | 3.7 | 15 | Citations (PDF) |
| 5 | Perspectives on the future of ecology, evolution, and biodiversity from the Council on Microbial Sciences of the American Society for Microbiology | 3.0 | 1 | Citations (PDF) |
| 6 | Adaptation to Overflow Metabolism by Mutations That Impair tRNA Modification in Experimentally Evolved Bacteria | 4.4 | 9 | Citations (PDF) |
| 7 | Phage therapy in a lung transplant recipient with cystic fibrosis infected with multidrug‐resistant <i>Burkholderia multivorans</i> | 2.2 | 32 | Citations (PDF) |
| 8 | The contribution of DNA repair pathways to
<i>Staphylococcus aureus</i>
fitness and fidelity during nitric oxide stress | 4.4 | 3 | Citations (PDF) |
| 9 | <i>Staphylococcus aureus</i> genotype variation among and within periprosthetic joint infections | 2.5 | 11 | Citations (PDF) |
| 10 | Whole-Genome Sequencing Surveillance and Machine Learning of the Electronic Health Record for Enhanced Healthcare Outbreak Detection | 5.4 | 105 | Citations (PDF) |
| 11 | The Nutritional Environment Is Sufficient To Select Coexisting Biofilm and Quorum Sensing Mutants of Pseudomonas aeruginosa | 2.9 | 15 | Citations (PDF) |
| 12 | Carbapenem-Resistant Acinetobacter baumannii in U.S. Hospitals: Diversification of Circulating Lineages and Antimicrobial Resistance | 4.4 | 71 | Citations (PDF) |
| 13 | Immunosuppression broadens evolutionary pathways to drug resistance and treatment failure during Acinetobacter baumannii pneumonia in mice | 16.5 | 48 | Citations (PDF) |
| 14 | Evolved resistance to a novel cationic peptide antibiotic requires high mutation supply | 1.6 | 13 | Citations (PDF) |
| 15 | Genomic Diversity of Hospital-Acquired Infections Revealed through Prospective Whole-Genome Sequencing-Based Surveillance | 4.5 | 38 | Citations (PDF) |
| 16 | Novel Requirement for Staphylococcal Cell Wall-Anchored Protein SasD in Pulmonary Infection | 3.7 | 3 | Citations (PDF) |
| 17 | Genomic characterization of SARS-CoV-2 from vaccine breakthrough cases in Allegheny County, Pennsylvania | 2.4 | 0 | Citations (PDF) |
| 18 | Genomic and Chemical Diversity of Bacillus subtilis Secondary Metabolites against Plant Pathogenic Fungi | 4.5 | 112 | Citations (PDF) |
| 19 | Full characterization of plasmids from Achromobacter ruhlandii isolates recovered from a single patient with cystic fibrosis (CF) | 0.9 | 0 | Citations (PDF) |
| 20 | Role of bacterial motility in differential resistance mechanisms of silver nanoparticles and silver ions | 33.5 | 220 | Citations (PDF) |
| 21 | Rampant prophage movement among transient competitors drives rapid adaptation during infection | 11.0 | 26 | Citations (PDF) |
| 22 | Quantitative mapping of mRNA 3’ ends in Pseudomonas aeruginosa reveals a pervasive role for premature 3’ end formation in response to azithromycin | 3.3 | 14 | Citations (PDF) |
| 23 | Precise measurement of the fitness effects of spontaneous mutations by droplet digital PCR in<i>Burkholderia cenocepacia</i> | 4.2 | 1 | Citations (PDF) |
| 24 | Evolution towards Virulence in a
<i>Burkholderia</i>
Two-Component System | 4.4 | 8 | Citations (PDF) |
| 25 | Polygenic Adaptation and Clonal Interference Enable Sustained Diversity in Experimental<i>Pseudomonas aeruginosa</i>Populations | 4.7 | 31 | Citations (PDF) |
| 26 | Evolutionary Divergence of the Wsp Signal Transduction Systems in Beta- and Gammaproteobacteria | 3.5 | 13 | Citations (PDF) |
| 27 | Emergence of an early SARS-CoV-2 epidemic in the United StatesCell, 2021, 184, 4939-4952.e15 | 34.1 | 49 | Citations (PDF) |
| 28 | Outbreak of <i>Pseudomonas aeruginosa</i> Infections from a Contaminated Gastroscope Detected by Whole Genome Sequencing Surveillance | 5.4 | 46 | Citations (PDF) |
| 29 | Adaptation and genomic erosion in fragmented Pseudomonas aeruginosa populations in the sinuses of people with cystic fibrosis | 6.4 | 40 | Citations (PDF) |
| 30 | Outbreak of Vancomycin-resistant Enterococcus faecium in Interventional Radiology: Detection Through Whole-genome Sequencing-based Surveillance | 5.4 | 62 | Citations (PDF) |
| 31 | Negative frequency‐dependent selection maintains coexisting genotypes during fluctuating selection | 3.7 | 15 | Citations (PDF) |
| 32 | One gene, multiple ecological strategies: A biofilm regulator is a capacitor for sustainable diversity | 7.6 | 28 | Citations (PDF) |
| 33 | Comparative Evolutionary Patterns of Burkholderia cenocepacia and B. multivorans During Chronic Co-infection of a Cystic Fibrosis Patient Lung | 3.9 | 15 | Citations (PDF) |
| 34 | Experimental Evolution
<i>In Vivo</i>
To Identify Selective Pressures during Pneumococcal Colonization | 4.5 | 23 | Citations (PDF) |
| 35 | Parallel Evolution of Tobramycin Resistance across Species and Environments | 4.4 | 95 | Citations (PDF) |
| 36 | Adaptation and Survival of Burkholderia cepacia and B. contaminans During Long-Term Incubation in Saline Solutions Containing Benzalkonium Chloride | 4.0 | 21 | Citations (PDF) |
| 37 | Mapping of Influenza Virus RNA-RNA Interactions Reveals a Flexible Network | 6.4 | 69 | Citations (PDF) |
| 38 | Quorum sensing provides a molecular mechanism for evolution to tune and maintain investment in cooperation | 9.1 | 33 | Citations (PDF) |
| 39 | Environment changes epistasis to alter trade‐offs along alternative evolutionary paths | 1.9 | 34 | Citations (PDF) |
| 40 | Pseudomonas aeruginosa Interstrain Dynamics and Selection of Hyperbiofilm Mutants during a Chronic Infection | 4.4 | 60 | Citations (PDF) |
| 41 | A method of processing nasopharyngeal swabs to enable multiple testing | 2.4 | 20 | Citations (PDF) |
| 42 | Forecasting Seasonal Vibrio parahaemolyticus Concentrations in New England Shellfish | 3.1 | 32 | Citations (PDF) |
| 43 | High-Level Carbapenem Resistance in OXA-232-Producing Raoultella ornithinolytica Triggered by Ertapenem Therapy | 4.2 | 15 | Citations (PDF) |
| 44 | Evolution of Outbreak-Causing Carbapenem-Resistant Klebsiella pneumoniae ST258 at a Tertiary Care Hospital over 8 Years | 4.4 | 94 | Citations (PDF) |
| 45 | NADH Dehydrogenases in Pseudomonas aeruginosa Growth and Virulence | 3.9 | 35 | Citations (PDF) |
| 46 | Reduced ceftazidime and ertapenem susceptibility due to production of OXA-2 in Klebsiella pneumoniae ST258 | 3.2 | 6 | Citations (PDF) |
| 47 | EvolvingSTEM: a microbial evolution-in-action curriculum that enhances learning of evolutionary biology and biotechnology | 1.1 | 12 | Citations (PDF) |
| 48 | Use of a cohorting-unit and systematic surveillance cultures to control a Klebsiella pneumoniae carbapenemase (KPC)–producing Enterobacteriaceae outbreak | 2.1 | 6 | Citations (PDF) |
| 49 | Use of online tools for antimicrobial resistance prediction by whole-genome sequencing in methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant enterococci (VRE) | 2.4 | 26 | Citations (PDF) |
| 50 | Structural basis of DSF recognition by its receptor RpfR and its regulatory interaction with the DSF synthase RpfF | 5.0 | 34 | Citations (PDF) |
| 51 | Hidden resources in the
<i>Escherichia coli</i>
genome restore PLP synthesis and robust growth after deletion of the essential gene
<i>pdxB</i> | 7.6 | 35 | Citations (PDF) |
| 52 | Expression of myeloid Src-family kinases is associated with poor prognosis in AML and influences Flt3-ITD kinase inhibitor acquired resistance | 2.4 | 30 | Citations (PDF) |
| 53 | <i>Clostridioides difficile</i>: a potential source of NpmA in the clinical environment | 3.2 | 16 | Citations (PDF) |
| 54 | Frequency and Mechanisms of Spontaneous Fosfomycin Nonsusceptibility Observed upon Disk Diffusion Testing of Escherichia coli | 4.1 | 42 | Citations (PDF) |
| 55 | Non-Uniform and Non-Random Binding of Nucleoprotein to Influenza A and B Viral RNA | 3.3 | 28 | Citations (PDF) |
| 56 | Improved Detection of Culprit Pathogens by Bacterial DNA Sequencing Affects Antibiotic Management Decisions in Severe Pneumonia | 0.7 | 5 | Citations (PDF) |
| 57 | Synonymous mutations make dramatic contributions to fitness when growth is limited by a weak-link enzyme | 3.3 | 97 | Citations (PDF) |
| 58 | Experimental Evolution as a High-Throughput Screen for Genetic Adaptations | 3.0 | 105 | Citations (PDF) |
| 59 | New Insights from Elucidating the Role of LMP1 in Nasopharyngeal Carcinoma | 4.0 | 38 | Citations (PDF) |
| 60 | Periodic Variation of Mutation Rates in Bacterial Genomes Associated with Replication Timing | 4.4 | 38 | Citations (PDF) |
| 61 | Phylogenomics of colistin-susceptible and resistant XDR Acinetobacter baumannii | 3.2 | 45 | Citations (PDF) |
| 62 | The OmpR Regulator of Burkholderia multivorans Controls Mucoid-to-Nonmucoid Transition and Other Cell Envelope Properties Associated with Persistence in the Cystic Fibrosis Lung | 2.9 | 17 | Citations (PDF) |
| 63 | Thrombospondin-1 protects against pathogen-induced lung injury by limiting extracellular matrix proteolysis | 5.4 | 48 | Citations (PDF) |
| 64 | Genetic requirements for Staphylococcus aureus nitric oxide resistance and virulence | 4.4 | 84 | Citations (PDF) |
| 65 | Ceftolozane-Tazobactam for the Treatment of Multidrug-Resistant Pseudomonas aeruginosa Infections: Clinical Effectiveness and Evolution of Resistance | 5.4 | 252 | Citations (PDF) |
| 66 | Outbreak of<i>Klebsiella pneumoniae</i>Carbapenemase–Producing<i>Citrobacter freundii</i>at a Tertiary Acute Care Facility in Miami, Florida | 2.1 | 27 | Citations (PDF) |
| 67 | RelA Mutant
<i>Enterococcus faecium</i>
with Multiantibiotic Tolerance Arising in an Immunocompromised Host | 4.4 | 90 | Citations (PDF) |
| 68 | Structural modification of LPS in colistin-resistant, KPC-producing Klebsiella pneumoniae | 3.2 | 68 | Citations (PDF) |
| 69 | Parallel Evolution of Two Clades of an Atlantic-Endemic Pathogenic Lineage of Vibrio parahaemolyticus by Independent Acquisition of Related Pathogenicity Islands | 3.5 | 37 | Citations (PDF) |
| 70 | Genome-wide analysis of influenza viral RNA and nucleoprotein association | 15.7 | 96 | Citations (PDF) |
| 71 | Genome-Wide Biases in the Rate and Molecular Spectrum of Spontaneous Mutations in<i>Vibrio cholerae</i>and<i>Vibrio fischeri</i> | 4.7 | 95 | Citations (PDF) |
| 72 | High-Level Fosfomycin Resistance in Vancomycin-Resistant <i>Enterococcus faecium</i> | 3.9 | 29 | Citations (PDF) |
| 73 | Structure of O-Antigen and Hybrid Biosynthetic Locus in Burkholderia cenocepacia Clonal Variants Recovered from a Cystic Fibrosis Patient | 3.9 | 27 | Citations (PDF) |
| 74 | Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure | 2.4 | 19 | Citations (PDF) |
| 75 | Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae | 3.9 | 109 | Citations (PDF) |
| 76 | Diverse phenotypic and genetic responses to short-term selection in evolving<i>Escherichia coli</i>populations | 1.9 | 31 | Citations (PDF) |
| 77 | Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of Selection | 4.5 | 101 | Citations (PDF) |
| 78 | Laboratory Evolution of Microbial Interactions in Bacterial Biofilms | 2.9 | 84 | Citations (PDF) |
| 79 | Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness | 7.6 | 52 | Citations (PDF) |
| 80 | Evolution of the Insertion-Deletion Mutation Rate Across the Tree of Life | 2.0 | 110 | Citations (PDF) |
| 81 | Characterization of a Novel IncHI2 Plasmid Carrying Tandem Copies of
<i>bla</i>
<sub>CTX-M-2</sub>
in a
<i>fosA6</i>
-Harboring Escherichia coli Sequence Type 410 Strain | 4.2 | 12 | Citations (PDF) |
| 82 | The Fitness Effects of Spontaneous Mutations Nearly Unseen by Selection in a Bacterium with Multiple Chromosomes | 4.2 | 23 | Citations (PDF) |
| 83 | Evolution of Ecological Diversity in Biofilms of Pseudomonas aeruginosa by Altered Cyclic Diguanylate Signaling | 2.9 | 82 | Citations (PDF) |
| 84 | Glutathione-<i>S</i>-transferase FosA6 of<i>Klebsiella pneumoniae</i>origin conferring fosfomycin resistance in ESBL-producing<i>Escherichia coli</i> | 3.2 | 57 | Citations (PDF) |
| 85 | Environmental Conditions Associated with Elevated Vibrio parahaemolyticus Concentrations in Great Bay Estuary, New Hampshire | 2.4 | 46 | Citations (PDF) |
| 86 | Character displacement and the evolution of niche complementarity in a model biofilm community | 1.9 | 45 | Citations (PDF) |
| 87 | Genetic characterization of clinical and environmental Vibrio parahaemolyticus from the Northeast USA reveals emerging resident and non-indigenous pathogen lineages | 3.9 | 43 | Citations (PDF) |
| 88 | The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of <i>Burkholderia cenocepacia</i> | 4.2 | 84 | Citations (PDF) |
| 89 | There and back again: consequences of biofilm specialization under selection for dispersal | 2.4 | 28 | Citations (PDF) |
| 90 | Use of Whole-Genome Phylogeny and Comparisons for Development of a Multiplex PCR Assay To Identify Sequence Type 36 Vibrio parahaemolyticus | 4.1 | 24 | Citations (PDF) |
| 91 | Genome sequence and comparative analysis of a putative entomopathogenic Serratia isolated from Caenorhabditis briggsae | 3.3 | 29 | Citations (PDF) |
| 92 | The Origins of Specialization: Insights from Bacteria Held 25 Years in Captivity | 5.0 | 26 | Citations (PDF) |
| 93 | Antibiotic resistance correlates with transmission in plasmid evolution | 1.9 | 52 | Citations (PDF) |
| 94 | Parallel evolution of small colony variants in Burkholderia cenocepacia biofilms | 2.8 | 57 | Citations (PDF) |
| 95 | The Environment Affects Epistatic Interactions to Alter the Topology of an Empirical Fitness Landscape | 3.3 | 110 | Citations (PDF) |
| 96 | Tangled bank of experimentally evolved<i>Burkholderia</i>biofilms reflects selection during chronic infections | 7.6 | 202 | Citations (PDF) |
| 97 | Evolutionary Effects of Translocations in Bacterial Genomes | 2.4 | 30 | Citations (PDF) |
| 98 | Ecology and Genetic Structure of a Northern Temperate Vibrio cholerae Population Related to Toxigenic Isolates | 3.5 | 34 | Citations (PDF) |
| 99 | Breaking the language barrier: experimental evolution of non-native Vibrio fischeri in squid tailors luminescence to the host | 1.7 | 20 | Citations (PDF) |
| 100 | Experimental Adaptation of
<i>Burkholderia cenocepacia</i>
to Onion Medium Reduces Host Range | 3.5 | 27 | Citations (PDF) |
| 101 | Why Genes Evolve Faster on Secondary Chromosomes in Bacteria | 3.1 | 111 | Citations (PDF) |
| 102 | Evolutionary Rates and Gene Dispensability Associate with Replication Timing in the Archaeon Sulfolobus islandicus | 2.4 | 29 | Citations (PDF) |
| 103 | Ecological succession in long-term experimentally evolved biofilms produces synergistic communities | 9.1 | 173 | Citations (PDF) |
| 104 | Susceptibility of Caenorhabditis elegans to Burkholderia Infection Depends on Prior Diet and Secreted Bacterial Attractants | 2.4 | 28 | Citations (PDF) |
| 105 | Timing of transmission and the evolution of virulence of an insect virus | 2.4 | 47 | Citations (PDF) |
| 106 | Title is missing! | 3.1 | 29 | Citations (PDF) |
| 107 | Mechanisms Causing Rapid and Parallel Losses of Ribose Catabolism in Evolving Populations of
Escherichia coli
B | 2.9 | 268 | Citations (PDF) |
| 108 | EVOLUTION OF THERMAL DEPENDENCE OF GROWTH RATE OF ESCHERICHIA COLI POPULATIONS DURING 20,000 GENERATIONS IN A CONSTANT ENVIRONMENT | 1.9 | 148 | Citations (PDF) |
| 109 | EVOLUTION OF THERMAL DEPENDENCE OF GROWTH RATE OF ESCHERICHIA COLI POPULATIONS DURING 20,000 GENERATIONS IN A CONSTANT ENVIRONMENT | 1.9 | 19 | Citations (PDF) |
| 110 | TRADEOFF BETWEEN HORIZONTAL AND VERTICAL MODES OF TRANSMISSION IN BACTERIAL PLASMIDS | 1.9 | 129 | Citations (PDF) |
| 111 | The roles of history, chance, and natural selection in the evolution of antibiotic resistance | 1.6 | 55 | Citations (PDF) |
| 112 | Host-selected mutations converging on a global regulator drive an adaptive leap towards symbiosis in bacteria | 1.6 | 50 | Citations (PDF) |
| 113 | Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle | 1.6 | 168 | Citations (PDF) |
| 114 | Mutations that improve efficiency of a weak-link enzyme are rare compared to adaptive mutations elsewhere in the genome | 1.6 | 29 | Citations (PDF) |
| 115 | Systematic detection of horizontal gene transfer across genera among multidrug-resistant bacteria in a single hospital | 1.6 | 136 | Citations (PDF) |
