| 1 | Exploring the potential role of palladin in modulating human
CAF
/
ECM
functional units | 1.5 | 1 | Citations (PDF) |
| 2 | PAK2 is necessary for myelination in the peripheral nervous systemBrain, 2024, 147, 1809-1821 | 8.4 | 9 | Citations (PDF) |
| 3 | Exploring Co-occurring POLE Exonuclease and Non-exonuclease Domain Mutations and Their Impact on Tumor Mutagenicity | 2.8 | 11 | Citations (PDF) |
| 4 | PAK2 Is Necessary for Myelination in the Peripheral Nerve System (S21.009) | 1.0 | 0 | Citations (PDF) |
| 5 | E proteins control the development of NKγδT cells through their invariant T cell receptor | 13.7 | 5 | Citations (PDF) |
| 6 | FAM122A ensures cell cycle interphase progression and checkpoint control by inhibiting B55α/PP2A through helical motifs | 13.7 | 10 | Citations (PDF) |
| 7 | Impact of primary sequence changes on the self‐association properties of mammalian cystathionine beta‐synthase enzymes | 5.9 | 1 | Citations (PDF) |
| 8 | Queer voices in computational biology: the first ISCB LGBTQI+ Symposium | 2.4 | 1 | Citations (PDF) |
| 9 | The protein common assembly database (ProtCAD)—a comprehensive structural resource of protein complexes | 15.5 | 6 | Citations (PDF) |
| 10 | Palmitoylation-dependent control of JAK1 kinase signaling governs responses to neuropoietic cytokines and survival in DRG neurons | 2.2 | 14 | Citations (PDF) |
| 11 | Kincore: a web resource for structural classification of protein kinases and their inhibitors | 15.5 | 106 | Citations (PDF) |
| 12 | PDBe-KB: collaboratively defining the biological context of structural data | 15.5 | 87 | Citations (PDF) |
| 13 | The ERK2 DBP domain opposes pathogenesis of a JAK2V617F-driven myeloproliferative neoplasm | 4.8 | 1 | Citations (PDF) |
| 14 | Delineating the RAS Conformational Landscape | 3.8 | 28 | Citations (PDF) |
| 15 | Development and Utility of a PAK1-Selective Degrader | 5.6 | 24 | Citations (PDF) |
| 16 | Structure of TFIIK for phosphorylation of CTD of RNA polymerase II | 10.9 | 18 | Citations (PDF) |
| 17 | PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design | 0.3 | 15 | Citations (PDF) |
| 18 | PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences | 2.3 | 34 | Citations (PDF) |
| 19 | Better together: Elements of successful scientific software development in a distributed collaborative community | 3.1 | 41 | Citations (PDF) |
| 20 | Multifaceted analysis of training and testing convolutional neural networks for protein secondary structure prediction | 2.3 | 17 | Citations (PDF) |
| 21 | ProtCID: a data resource for structural information on protein interactions | 13.7 | 55 | Citations (PDF) |
| 22 | Protein modeling to assess the pathogenicity of rare variants of SERPINA1 in patients suspected of having Alpha 1 Antitrypsin Deficiency | 1.8 | 18 | Citations (PDF) |
| 23 | Interaction of germline variants in a family with a history of early‐onset clear cell renal cell carcinoma | 1.6 | 11 | Citations (PDF) |
| 24 | Defining a new nomenclature for the structures of active and inactive kinases | 7.5 | 348 | Citations (PDF) |
| 25 | A new clustering and nomenclature for beta turns derived from high-resolution protein structures | 3.1 | 84 | Citations (PDF) |
| 26 | Principles and characteristics of biological assemblies in experimentally determined protein structures | 6.4 | 18 | Citations (PDF) |
| 27 | A Structurally-Validated Multiple Sequence Alignment of 497 Human Protein Kinase Domains | 3.4 | 124 | Citations (PDF) |
| 28 | Plk2 Loss Commonly Occurs in Colorectal Carcinomas but not Adenomas: Relationship to mTOR Signaling | 7.0 | 23 | Citations (PDF) |
| 29 | Role of a selecting ligand in shaping the murine γδ-TCR repertoire | 7.5 | 60 | Citations (PDF) |
| 30 | Contribution of an unusual CDR2 element of a single domain antibody in ricin toxin binding affinity and neutralizing activity | 2.6 | 8 | Citations (PDF) |
| 31 | RosettaAntibodyDesign (RAbD): A general framework for computational antibody design | 3.1 | 215 | Citations (PDF) |
| 32 | Mouse modeling and structural analysis of the p.G307S mutation in human cystathionine β-synthase (CBS) reveal effects on CBS activity but not stability | 2.2 | 16 | Citations (PDF) |
| 33 | The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design | 5.1 | 1,550 | Citations (PDF) |
| 34 | Functional analysis of rare variants in mismatch repair proteins augments results from computation-based predictive methods | 4.1 | 25 | Citations (PDF) |
| 35 | Biological function derived from predicted structures in CASP11 | 2.6 | 9 | Citations (PDF) |
| 36 | CASP 11 target classification | 2.6 | 33 | Citations (PDF) |
| 37 | Assessment of refinement of template‐based models in CASP11 | 2.6 | 40 | Citations (PDF) |
| 38 | Assessment of template‐based modeling of protein structure in CASP11 | 2.6 | 30 | Citations (PDF) |
| 39 | Cancer Signature Investigation:<i>ERBB2</i>(<i>HER2</i>)-Activating Mutation and Amplification-Positive Breast Carcinoma Mimicking Lung Primary | 12.6 | 14 | Citations (PDF) |
| 40 | The Origin of CDR H3 Structural Diversity | 3.8 | 104 | Citations (PDF) |
| 41 | Defects in DNA Repair Genes Predict Response to Neoadjuvant Cisplatin-based Chemotherapy in Muscle-invasive Bladder Cancer | 2.1 | 481 | Citations (PDF) |
| 42 | Characteristics of clinical trials that require participants to be fluent in English | 1.8 | 40 | Citations (PDF) |
| 43 | PyIgClassify: a database of antibody CDR structural classifications | 15.5 | 127 | Citations (PDF) |
| 44 | Identifying three-dimensional structures of autophosphorylation complexes in crystals of protein kinases | 5.4 | 46 | Citations (PDF) |
| 45 | Conformational Analysis of the DFG-Out Kinase Motif and Biochemical Profiling of Structurally Validated Type II Inhibitors | 5.6 | 236 | Citations (PDF) |
| 46 | Issues in interpreting thein vivoactivity of Aurora-A | 3.7 | 22 | Citations (PDF) |
| 47 | Acetylation of the Transcriptional Repressor Ume6p Allows Efficient Promoter Release and Timely Induction of the Meiotic Transient Transcription Program in Yeast | 2.5 | 23 | Citations (PDF) |
| 48 | BioAssemblyModeler (BAM): User-Friendly Homology Modeling of Protein Homo- and Heterooligomers | 2.3 | 16 | Citations (PDF) |
| 49 | Charge asymmetry in the proteins of the outer membrane | 4.7 | 56 | Citations (PDF) |
| 50 | A new model for allosteric regulation of phenylalanine hydroxylase: Implications for disease and therapeutics | 2.8 | 58 | Citations (PDF) |
| 51 | A Modified HSP70 Inhibitor Shows Broad Activity as an Anticancer Agent | 3.1 | 101 | Citations (PDF) |
| 52 | Prediction of phenotypes of missense mutations in human proteins from biological assemblies | 2.6 | 23 | Citations (PDF) |
| 53 | A Highly Selective Dual Insulin Receptor (IR)/Insulin-like Growth Factor 1 Receptor (IGF-1R) Inhibitor Derived from an Extracellular Signal-regulated Kinase (ERK) Inhibitor | 2.2 | 16 | Citations (PDF) |
| 54 | Architecture and Assembly of HIV Integrase Multimers in the Absence of DNA Substrates | 2.2 | 29 | Citations (PDF) |
| 55 | The PyRosetta Toolkit: A Graphical User Interface for the Rosetta Software Suite | 2.3 | 35 | Citations (PDF) |
| 56 | The Role of Balanced Training and Testing Data Sets for Binary Classifiers in Bioinformatics | 2.3 | 261 | Citations (PDF) |
| 57 | Abstract A291: A highly selective dual insulin receptor (IR)/insulin-like growth factor 1 receptor (IGF-1R) inhibitor derived from an ERK inhibitor. | 1.9 | 1 | Citations (PDF) |
| 58 | Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB | 4.7 | 61 | Citations (PDF) |
| 59 | Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites | 7.5 | 68 | Citations (PDF) |
| 60 | CD45-deficient severe combined immunodeficiency caused by uniparental disomy | 7.5 | 82 | Citations (PDF) |
| 61 | Minimal ensembles of side chain conformers for modeling protein–protein interactions | 2.6 | 27 | Citations (PDF) |
| 62 | Aurora A kinase (AURKA) in normal and pathological cell division | 5.5 | 416 | Citations (PDF) |
| 63 | The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms | 15.5 | 82 | Citations (PDF) |
| 64 | A New Clustering of Antibody CDR Loop Conformations | 4.1 | 407 | Citations (PDF) |
| 65 | Protein-intrinsic and signaling network-based sources of resistance to EGFR- and ErbB family-targeted therapies in head and neck cancer | 19.2 | 32 | Citations (PDF) |
| 66 | A Smoothed Backbone-Dependent Rotamer Library for Proteins Derived from Adaptive Kernel Density Estimates and Regressions | 3.8 | 1,006 | Citations (PDF) |
| 67 | PONDR-FIT: A meta-predictor of intrinsically disordered amino acids | 2.0 | 1,179 | Citations (PDF) |
| 68 | Testing computational prediction of missense mutation phenotypes: Functional characterization of 204 mutations of human cystathionine beta synthase | 2.6 | 67 | Citations (PDF) |
| 69 | Structural profiling of endogenous S-nitrosocysteine residues reveals unique features that accommodate diverse mechanisms for protein S-nitrosylation | 7.5 | 247 | Citations (PDF) |
| 70 | A Bifunctional Regulatory Element in Human Somatic Wee1 Mediates Cyclin A/Cdk2 Binding and Crm1-Dependent Nuclear Export | 2.5 | 43 | Citations (PDF) |
| 71 | Numb Independently Antagonizes Sanpodo Membrane Targeting and Notch Signaling in Drosophila Sensory Organ Precursor Cells | 2.5 | 41 | Citations (PDF) |
| 72 | Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model | 3.1 | 163 | Citations (PDF) |
| 73 | Clinical Trials That Explicitly Exclude Gay and Lesbian Patients | 34.5 | 35 | Citations (PDF) |
| 74 | Rapid calcium-dependent activation of Aurora-A kinase | 13.7 | 78 | Citations (PDF) |
| 75 | Development of a Rotamer Library for Use in β-Peptide Foldamer Computational Design | 15.0 | 38 | Citations (PDF) |
| 76 | Mixed Quantum Mechanics/Molecular Mechanics Scoring Function To Predict Protein−Ligand Binding Affinity | 5.1 | 86 | Citations (PDF) |
| 77 | Outcome of a Workshop on Applications of Protein Models in Biomedical Research | 3.8 | 147 | Citations (PDF) |
| 78 | Conformation Dependence of Backbone Geometry in Proteins | 3.8 | 104 | Citations (PDF) |
| 79 | An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases | 2.6 | 21 | Citations (PDF) |
| 80 | Improved prediction of protein side‐chain conformations with SCWRL4 | 2.6 | 1,302 | Citations (PDF) |
| 81 | A forward-looking suggestion for resolving the stereochemical restraints debate: ideal geometry functions | 3.1 | 14 | Citations (PDF) |
| 82 | Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins | 4.1 | 105 | Citations (PDF) |
| 83 | Oligomerization of BAK by p53 Utilizes Conserved Residues of the p53 DNA Binding Domain | 2.2 | 85 | Citations (PDF) |
| 84 | Statistical and conformational analysis of the electron density of protein side chains | 2.6 | 50 | Citations (PDF) |
| 85 | Two Potentially Important Elements of the Hepatitis B Virus Large Envelope Protein Are Dispensable for the Infectivity of Hepatitis Delta Virus | 3.6 | 32 | Citations (PDF) |
| 86 | ProtBuD: a database of biological unit structures of protein families and superfamilies | 4.7 | 0 | Citations (PDF) |
| 87 | BioDownloader: bioinformatics downloads and updates in a few clicks | 4.7 | 4 | Citations (PDF) |
| 88 | Structure of a human ASF1a–HIRA complex and insights into specificity of histone chaperone complex assembly | 8.8 | 182 | Citations (PDF) |
| 89 | Sequence comparison and protein structure prediction | 6.4 | 174 | Citations (PDF) |
| 90 | ProtBuD: a database of biological unit structures of protein families and superfamilies | 4.7 | 46 | Citations (PDF) |
| 91 | Regulation of the Oxidative Stress Response Through Slt2p-Dependent Destruction of Cyclin C in Saccharomyces cerevisiae | 4.2 | 59 | Citations (PDF) |
| 92 | Domain definition and target classification for CASP6 | 2.6 | 26 | Citations (PDF) |
| 93 | Assessment of fold recognition predictions in CASP6 | 2.6 | 51 | Citations (PDF) |
| 94 | Assessment of disorder predictions in CASP6 | 2.6 | 107 | Citations (PDF) |
| 95 | MollDE: a homology modeling framework you can click with | 4.7 | 47 | Citations (PDF) |
| 96 | PISCES: recent improvements to a PDB sequence culling server | 15.5 | 325 | Citations (PDF) |
| 97 | Quasi-consensus-based comparison of profile hidden Markov models for protein sequences | 4.7 | 17 | Citations (PDF) |
| 98 | Formation of MacroH2A-Containing Senescence-Associated Heterochromatin Foci and Senescence Driven by ASF1a and HIRA | 7.7 | 652 | Citations (PDF) |
| 99 | Scoring profile-to-profile sequence alignments | 5.9 | 130 | Citations (PDF) |
| 100 | CAFASP3: The third critical assessment of fully automated structure prediction methods | 2.6 | 110 | Citations (PDF) |
| 101 | Cyclic coordinate descent: A robotics algorithm for protein loop closure | 5.9 | 496 | Citations (PDF) |
| 102 | A graph‐theory algorithm for rapid protein side‐chain prediction | 5.9 | 929 | Citations (PDF) |
| 103 | PISCES: a protein sequence culling server | 4.7 | 1,623 | Citations (PDF) |
| 104 | A Structural Basis for Half-of-the-sites Metal Binding Revealed in Drosophila melanogaster Porphobilinogen Synthase | 2.2 | 15 | Citations (PDF) |
| 105 | BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster | 4.7 | 37 | Citations (PDF) |
| 106 | Mapping the Epitope of an Inhibitory Monoclonal Antibody to the C-terminal DNA-binding Domain of HIV-1 Integrase | 2.2 | 20 | Citations (PDF) |
| 107 | CASA: a server for the critical assessment of protein sequence alignment accuracy | 4.7 | 11 | Citations (PDF) |
| 108 | Identification and Characterization of a Paralog of Human Cell Cycle Checkpoint Gene HUS1 | 2.8 | 30 | Citations (PDF) |
| 109 | Rotamer Libraries in the 21st Century | 6.4 | 646 | Citations (PDF) |
| 110 | OVCA2 is downregulated and degraded during retinoid-induced apoptosis | 4.3 | 25 | Citations (PDF) |
| 111 | CAFASP2: The second critical assessment of fully automated structure prediction methods | 2.6 | 132 | Citations (PDF) |
| 112 | The Molecular Mechanism of Lead Inhibition of Human Porphobilinogen Synthase | 2.2 | 108 | Citations (PDF) |
| 113 | Mutations in the regulatory domain of cystathionine beta-synthase can functionally suppress patient-derived mutations in cis | 2.9 | 106 | Citations (PDF) |
| 114 | Large-scale comparison of protein sequence alignment algorithms with structure alignments 2000, 40, 6-22 | | 227 | Citations (PDF) |
| 115 | Identification of a novel pre-TCR isoform in which the accessibility of the TCRβ subunit is determined by occupancy of the `missing' V domain of pre-Tα | 3.1 | 4 | Citations (PDF) |
| 116 | An Inhibitory Monoclonal Antibody Binds at the Turn of the Helix-Turn-Helix Motif in the N-terminal Domain of HIV-1 Integrase | 2.2 | 25 | Citations (PDF) |
| 117 | An Artificial Gene for Human Porphobilinogen Synthase Allows Comparison of an Allelic Variation Implicated in Susceptibility to Lead Poisoning | 2.2 | 42 | Citations (PDF) |
| 118 | Identification and Structural Analysis of Human RBM8A and RBM8B: Two Highly Conserved RNA-Binding Motif Proteins That Interact with OVCA1, a Candidate Tumor Suppressor | 2.8 | 52 | Citations (PDF) |
| 119 | Modeling of substrate specificity of the Alzheimer’s disease amyloid precursor protein β-secretase 1 1Edited by F. E. Cohen | 4.1 | 53 | Citations (PDF) |
| 120 | Porphobilinogen Synthase from Pea: Expression from an Artificial Gene, Kinetic Characterization, and Novel Implications for Subunit Interactions† | 2.4 | 46 | Citations (PDF) |
| 121 | The evolutionarily conserved Dim1 protein defines a novel branch of the thioredoxin fold superfamily | 2.4 | 26 | Citations (PDF) |
| 122 | Ier5,a Novel Member of the Slow-Kinetics Immediate-Early Genes | 2.8 | 54 | Citations (PDF) |
| 123 | Unique Properties of the Large Antigen of Hepatitis Delta Virus | 3.6 | 13 | Citations (PDF) |
| 124 | Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool | 4.1 | 545 | Citations (PDF) |
| 125 | Meeting review: the Second Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP2), Asilomar, California, December 13–16, 1996 | 4.2 | 50 | Citations (PDF) |
| 126 | Entamoeba histolytica:Computer-Assisted Modeling of Phosphofructokinase for the Prediction of Broad-Spectrum Antiparasitic Agents | 1.4 | 22 | Citations (PDF) |
| 127 | Bayesian statistical analysis of protein side‐chain rotamer preferences | 5.9 | 750 | Citations (PDF) |
| 128 | Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains | 8.8 | 325 | Citations (PDF) |
| 129 | Cis-Trans Imide Isomerization of the Proline Dipeptide | 15.0 | 212 | Citations (PDF) |
| 130 | Backbone-dependent Rotamer Library for Proteins Application to Side-chain Prediction | 4.1 | 916 | Citations (PDF) |
| 131 | Molecular dynamics simulation of the proline conformational equilibrium and dynamics in antamanide using the CHARMM force field | 15.0 | 64 | Citations (PDF) |
| 132 | Mutational Analysis of the Structure and Function of the CD4 Protein | 6.4 | 15 | Citations (PDF) |
| 133 | Calculation of Franck-Condon factors for undergraduate quantum chemistry | 2.8 | 16 | Citations (PDF) |
| 134 | PP2A/B55α substrate recruitment as defined by the retinoblastoma-related protein p107 | 0.7 | 35 | Citations (PDF) |
| 135 | BPS2026 – Interfamily crosstalk between ERK2, RSK2, and mTORC2 across four kinase families | 2.2 | 0 | Citations (PDF) |
| 136 | Defining active conformations from substrate-bound structures enables active-state AlphaFold2 modeling of all 437 human catalytic protein kinase domains | 3.8 | 0 | Citations (PDF) |
